Wall clock time and date at job start Sat Apr 11 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35352 * 117.00518 * 2 1 4 4 N 1.30547 * 125.44723 * 179.97438 * 3 2 1 5 5 C 1.36335 * 108.38152 * 179.97438 * 4 3 2 6 6 C 1.47372 * 126.41016 * 180.02562 * 5 4 3 7 7 O 1.21620 * 119.99341 * 179.97438 * 6 5 4 8 8 N 1.34775 * 120.00318 * 359.97438 * 6 5 4 9 9 C 1.46494 * 120.00284 * 180.02562 * 8 6 5 10 10 C 1.52990 * 109.47488 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47500 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47178 * 305.00443 * 11 10 9 13 13 C 1.53004 * 109.47606 * 185.00124 * 11 10 9 14 14 N 1.46901 * 109.47335 * 64.99979 * 11 10 9 15 15 C 1.46894 * 111.00627 * 205.00264 * 14 11 10 16 16 C 1.50691 * 109.47432 * 179.97438 * 15 14 11 17 17 O 1.21292 * 119.99968 * 0.02562 * 16 15 14 18 18 N 1.34783 * 120.00287 * 179.97438 * 16 15 14 19 19 C 1.37089 * 120.00038 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00536 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99959 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00639 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99806 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47089 * 90.00385 * 23 21 19 25 25 H 1.48510 * 109.46976 * 210.00036 * 23 21 19 26 26 H 1.48492 * 109.47327 * 329.99945 * 23 21 19 27 27 C 1.35914 * 107.17453 * 0.02562 * 5 4 3 28 28 O 1.34201 * 125.44503 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47212 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46893 * 299.99904 * 1 2 3 31 31 H 1.08999 * 109.46935 * 59.99831 * 1 2 3 32 32 H 0.97005 * 119.99897 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.46744 * 300.00252 * 9 8 6 34 34 H 1.09001 * 109.47129 * 59.99227 * 9 8 6 35 35 H 1.09001 * 109.47515 * 300.00001 * 10 9 8 36 36 H 1.09010 * 109.47229 * 59.99884 * 10 9 8 37 37 H 1.09000 * 109.47112 * 300.00359 * 13 11 10 38 38 H 1.09004 * 109.46551 * 60.00042 * 13 11 10 39 39 H 1.09001 * 109.47396 * 179.97438 * 13 11 10 40 40 H 1.00898 * 110.99662 * 328.96062 * 14 11 10 41 41 H 1.09002 * 109.47090 * 300.00324 * 15 14 11 42 42 H 1.08997 * 109.47045 * 59.99566 * 15 14 11 43 43 H 0.97005 * 119.99364 * 359.97438 * 18 16 15 44 44 H 0.96990 * 120.00589 * 179.97438 * 22 21 19 45 45 H 1.07995 * 126.45649 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2059 0.0000 4 7 3.3349 1.3976 0.0005 5 6 3.5702 2.7405 -0.0003 6 6 4.8894 3.3974 -0.0006 7 8 4.9642 4.6113 -0.0018 8 7 6.0130 2.6530 0.0003 9 6 7.3243 3.3060 0.0006 10 6 8.4238 2.2422 0.0024 11 6 9.7934 2.9241 0.0020 12 1 9.8562 3.6127 -0.8407 13 6 10.8906 1.8650 -0.1220 14 7 9.9704 3.6680 1.2563 15 6 10.9269 4.7696 1.0846 16 6 11.0817 5.5083 2.3889 17 8 10.4571 5.1519 3.3656 18 7 11.9150 6.5645 2.4705 19 6 12.0562 7.2361 3.6572 20 1 11.4995 6.9193 4.5267 21 6 12.9150 8.3253 3.7412 22 7 13.0500 8.9695 4.8786 23 14 13.8775 8.8739 2.2372 24 1 13.0836 9.8740 1.4791 25 1 15.1617 9.4838 2.6666 26 1 14.1525 7.7001 1.3702 27 6 2.3605 3.3599 -0.0007 28 8 1.4229 2.3958 -0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 5.9533 1.6848 0.0016 33 1 7.4209 3.9274 -0.8897 34 1 7.4201 3.9285 0.8902 35 1 8.3271 1.6211 0.8929 36 1 8.3283 1.6193 -0.8871 37 1 10.8278 1.1765 0.7206 38 1 10.7593 1.3131 -1.0528 39 1 11.8663 2.3510 -0.1227 40 1 9.0859 4.0078 1.6030 41 1 11.8924 4.3679 0.7773 42 1 10.5588 5.4547 0.3210 43 1 12.4154 6.8489 1.6896 44 1 13.6497 9.7296 4.9373 45 1 2.1851 4.4255 -0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281739752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:21 Heat of formation + Delta-G solvation = -108.201162 kcal Electronic energy + Delta-G solvation = -28236.962771 eV Core-core repulsion = 23869.935120 eV Total energy + Delta-G solvation = -4367.027651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.58984 -40.80528 -40.33209 -39.78797 -38.42373 -36.19547 -36.05930 -35.69824 -33.76350 -32.67157 -31.31981 -29.90509 -28.32464 -28.20112 -26.06573 -25.35598 -23.92162 -23.23230 -21.95764 -21.33908 -21.24215 -20.32109 -20.02333 -18.62516 -18.44069 -17.79619 -17.47119 -17.29427 -16.95861 -16.78426 -16.52126 -16.36999 -16.19156 -15.86397 -15.56025 -15.18568 -14.99095 -14.63006 -14.53175 -14.42692 -14.27547 -13.92538 -13.38190 -13.16731 -13.11431 -12.99071 -12.89926 -12.58157 -12.41610 -12.29582 -12.19685 -12.11279 -11.98810 -11.96308 -11.79238 -11.51252 -11.38983 -10.43089 -10.27868 -10.24698 -9.79505 -9.29985 -8.41016 -6.02031 -0.03409 0.83814 0.85671 1.30529 1.36020 1.44956 1.64656 1.96063 2.02753 2.11764 2.23484 2.74366 3.15367 3.29813 3.42177 3.70002 3.78345 3.96072 4.07500 4.12733 4.17571 4.19314 4.24192 4.38770 4.43283 4.48478 4.53168 4.59709 4.61840 4.65105 4.71145 4.97587 5.02235 5.05115 5.20694 5.28384 5.50175 5.54034 5.56189 5.92166 6.11325 6.21430 6.40981 6.50595 6.60235 6.88280 6.99621 7.39897 7.96927 8.76745 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.001780 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.713001 B =15725.948693 C =16599.810490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.255 6.255 3 C 0.383 3.617 4 N -0.480 5.480 5 C -0.077 4.077 6 C 0.599 3.401 7 O -0.567 6.567 8 N -0.700 5.700 9 C 0.115 3.885 10 C -0.121 4.121 11 C 0.086 3.914 12 H 0.062 0.938 13 C -0.137 4.137 14 N -0.686 5.686 15 C 0.061 3.939 16 C 0.447 3.553 17 O -0.615 6.615 18 N -0.591 5.591 19 C -0.330 4.330 20 H 0.054 0.946 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.230 1.230 27 C 0.028 3.972 28 O -0.216 6.216 29 H 0.146 0.854 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.419 0.581 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.341 0.659 41 H 0.114 0.886 42 H 0.076 0.924 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.523 -18.802 -21.213 36.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.163 6.163 3 C 0.136 3.864 4 N -0.227 5.227 5 C -0.195 4.195 6 C 0.385 3.615 7 O -0.446 6.446 8 N -0.350 5.350 9 C -0.009 4.009 10 C -0.159 4.159 11 C -0.023 4.023 12 H 0.080 0.920 13 C -0.195 4.195 14 N -0.321 5.321 15 C -0.071 4.071 16 C 0.235 3.765 17 O -0.500 6.500 18 N -0.232 5.232 19 C -0.459 4.459 20 H 0.072 0.928 21 C -0.214 4.214 22 N -0.575 5.575 23 Si 0.786 3.214 24 H -0.182 1.182 25 H -0.199 1.199 26 H -0.154 1.154 27 C -0.045 4.045 28 O -0.106 6.106 29 H 0.164 0.836 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.256 0.744 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.162 0.838 41 H 0.132 0.868 42 H 0.093 0.907 43 H 0.226 0.774 44 H 0.089 0.911 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -21.884 -19.225 -20.190 35.442 hybrid contribution -0.616 1.525 -0.258 1.665 sum -22.500 -17.700 -20.448 35.181 Atomic orbital electron populations 1.23716 0.72563 1.07832 1.03912 1.86416 1.26162 1.14828 1.88896 1.23476 0.85524 0.80318 0.97098 1.70983 1.11056 1.15741 1.24925 1.21499 0.95774 0.88824 1.13377 1.16887 0.82873 0.85638 0.76078 1.90854 1.87286 1.14087 1.52406 1.45709 1.04985 1.11301 1.73021 1.21503 0.81314 0.96280 1.01779 1.21911 0.91465 0.97560 1.04955 1.21606 0.95060 0.95751 0.89906 0.92038 1.21790 0.97471 0.98005 1.02224 1.60231 1.15237 1.26559 1.30035 1.21689 1.00036 0.92934 0.92470 1.21049 0.81838 0.81930 0.91682 1.90543 1.50039 1.68593 1.40800 1.42028 1.41163 1.28781 1.11275 1.19014 1.25800 1.11449 0.89684 0.92820 1.26133 0.98208 0.95579 1.01468 1.69804 1.38554 1.21439 1.27715 0.85351 0.78177 0.80153 0.77755 1.18205 1.19905 1.15359 1.25562 0.84128 0.94801 0.99976 1.84435 1.39106 1.15589 1.71491 0.83575 0.90628 0.90371 0.74414 0.90891 0.93236 0.90407 0.87482 0.92942 0.90023 0.92944 0.83824 0.86764 0.90659 0.77448 0.91139 0.72020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 10.73 113.37 1.22 1.26 16 2 O -0.26 -3.37 10.55 -64.21 -0.68 -4.05 16 3 C 0.38 6.59 8.98 130.43 1.17 7.76 16 4 N -0.48 -10.19 11.10 -419.39 -4.65 -14.84 16 5 C -0.08 -1.62 6.99 40.31 0.28 -1.34 16 6 C 0.60 15.00 7.81 86.65 0.68 15.67 16 7 O -0.57 -17.70 16.89 -4.09 -0.07 -17.77 16 8 N -0.70 -14.75 5.55 -466.44 -2.59 -17.34 16 9 C 0.11 2.44 5.50 86.38 0.48 2.91 16 10 C -0.12 -2.03 4.92 30.59 0.15 -1.88 16 11 C 0.09 1.72 2.65 44.92 0.12 1.84 16 12 H 0.06 1.07 7.80 -2.39 -0.02 1.06 16 13 C -0.14 -2.44 9.42 71.98 0.68 -1.76 16 14 N -0.69 -20.54 5.93 -495.61 -2.94 -23.48 16 15 C 0.06 1.93 5.96 85.56 0.51 2.44 16 16 C 0.45 20.96 7.82 87.65 0.69 21.65 16 17 O -0.62 -35.47 15.78 -3.07 -0.05 -35.52 16 18 N -0.59 -28.75 5.09 -306.99 -1.56 -30.31 16 19 C -0.33 -19.91 10.16 84.04 0.85 -19.05 16 20 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 21 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 22 N -0.93 -57.45 13.96 21.66 0.30 -57.14 16 23 Si 0.97 39.60 27.74 68.60 1.90 41.51 16 24 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.23 -7.94 6.52 99.48 0.65 -7.30 16 27 C 0.03 0.43 11.93 67.28 0.80 1.23 16 28 O -0.22 -3.10 10.20 18.93 0.19 -2.90 16 29 H 0.15 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.07 0.17 8.14 -2.38 -0.02 0.16 16 31 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.42 7.39 8.20 -92.70 -0.76 6.63 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.34 6.43 -2.39 -0.02 1.32 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.05 0.99 7.45 -2.39 -0.02 0.97 16 40 H 0.34 11.35 6.17 -89.70 -0.55 10.80 16 41 H 0.11 3.06 7.44 -2.39 -0.02 3.04 16 42 H 0.08 1.97 8.05 -2.39 -0.02 1.96 16 43 H 0.39 15.67 5.76 -92.70 -0.53 15.13 16 44 H 0.28 15.65 8.31 -92.72 -0.77 14.88 16 45 H 0.26 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -87.59 388.08 -2.90 -90.49 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: -0.84 Total: 41.03 kcal Atomic # 6 Polarization: 22.25 SS G_CDS: 8.09 Total: 30.33 kcal Atomic # 7 Polarization: -131.67 SS G_CDS: -11.44 Total: -143.12 kcal Atomic # 8 Polarization: -59.64 SS G_CDS: -0.60 Total: -60.24 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 1.90 Total: 41.51 kcal Total: -87.59 -2.90 -90.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281739752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.708 kcal (2) G-P(sol) polarization free energy of solvation -87.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds