Wall clock time and date at job start Sat Apr 11 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35730 * 116.99621 * 2 1 4 4 C 1.41854 * 126.78485 * 180.30128 * 3 2 1 5 5 C 1.36668 * 103.81193 * 180.12301 * 4 3 2 6 6 C 1.47544 * 126.87940 * 179.87888 * 5 4 3 7 7 O 1.21576 * 119.99843 * 359.70557 * 6 5 4 8 8 N 1.34774 * 119.99490 * 179.70692 * 6 5 4 9 9 C 1.46510 * 119.99612 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46956 * 324.99932 * 9 8 6 11 11 C 1.52997 * 109.47071 * 84.99838 * 9 8 6 12 12 C 1.52992 * 109.46966 * 205.00152 * 9 8 6 13 13 H 1.09002 * 109.47103 * 299.99690 * 12 9 8 14 14 C 1.52997 * 109.47482 * 59.99937 * 12 9 8 15 15 N 1.46902 * 109.47181 * 180.02562 * 12 9 8 16 16 C 1.46895 * 111.00561 * 154.99678 * 15 12 9 17 17 C 1.50699 * 109.47505 * 180.02562 * 16 15 12 18 18 O 1.21295 * 119.99607 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00043 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99820 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00168 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99647 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99567 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00375 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47206 * 89.99625 * 24 22 20 26 26 H 1.48500 * 109.47157 * 210.00190 * 24 22 20 27 27 H 1.48507 * 109.47022 * 330.00203 * 24 22 20 28 28 O 1.34657 * 106.23970 * 359.60949 * 5 4 3 29 29 N 1.20877 * 111.63327 * 0.27018 * 28 5 4 30 30 H 1.08995 * 109.47469 * 299.99956 * 1 2 3 31 31 H 1.09007 * 109.47423 * 60.00209 * 1 2 3 32 32 H 1.09005 * 109.46719 * 179.97438 * 1 2 3 33 33 H 1.07997 * 128.09511 * 359.97438 * 4 3 2 34 34 H 0.96995 * 120.00792 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.47289 * 180.02562 * 11 9 8 36 36 H 1.09004 * 109.47261 * 300.00043 * 11 9 8 37 37 H 1.09002 * 109.47153 * 60.00215 * 11 9 8 38 38 H 1.09002 * 109.47153 * 59.99783 * 14 12 9 39 39 H 1.09001 * 109.46832 * 299.99974 * 14 12 9 40 40 H 1.09004 * 109.47261 * 179.97438 * 14 12 9 41 41 H 1.00906 * 110.99706 * 278.95562 * 15 12 9 42 42 H 1.09004 * 109.46925 * 300.00216 * 16 15 12 43 43 H 1.09001 * 109.46797 * 59.99650 * 16 15 12 44 44 H 0.97001 * 120.00239 * 359.97438 * 19 17 16 45 45 H 0.96999 * 119.99901 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4430 1.4506 -0.0060 5 6 3.5389 2.8139 -0.0003 6 6 4.7783 3.6143 -0.0005 7 8 5.8602 3.0596 -0.0007 8 7 4.7111 4.9604 -0.0004 9 6 5.9418 5.7553 0.0000 10 1 6.7035 5.2452 0.5897 11 6 6.4388 5.9264 -1.4368 12 6 5.6607 7.1300 0.6097 13 1 4.8990 7.6401 0.0200 14 6 5.1637 6.9589 2.0465 15 7 6.8946 7.9273 0.6096 16 6 6.5926 9.3649 0.6096 17 6 7.8797 10.1487 0.6088 18 8 8.9440 9.5668 0.6088 19 7 7.8483 11.4960 0.6092 20 6 9.0193 12.2090 0.6090 21 1 9.9669 11.6910 0.6090 22 6 8.9868 13.5982 0.6089 23 7 10.1093 14.2816 0.6092 24 14 7.3478 14.4942 0.6082 25 1 6.9129 14.7317 2.0080 26 1 7.4953 15.7955 -0.0919 27 1 6.3320 13.6676 -0.0921 28 8 2.2757 3.2803 -0.0007 29 7 1.4685 2.3805 -0.0004 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 4.2441 0.7263 -0.0111 34 1 3.8480 5.4030 -0.0006 35 1 7.3547 6.5174 -1.4365 36 1 6.6391 4.9469 -1.8712 37 1 5.6771 6.4365 -2.0265 38 1 5.9254 6.4488 2.6362 39 1 4.2481 6.3675 2.0462 40 1 4.9639 7.9384 2.4810 41 1 7.4839 7.6816 1.3909 42 1 6.0149 9.6148 -0.2804 43 1 6.0151 9.6148 1.4996 44 1 6.9971 11.9613 0.6096 45 1 10.0866 15.2513 0.6087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282122619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:24 Heat of formation + Delta-G solvation = -30.274202 kcal Electronic energy + Delta-G solvation = -28676.277413 eV Core-core repulsion = 24312.628928 eV Total energy + Delta-G solvation = -4363.648484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.47573 -40.28239 -39.39784 -38.66414 -37.43179 -34.82209 -33.92029 -33.69886 -32.55601 -31.69092 -30.75007 -29.70445 -28.19167 -26.55226 -24.99531 -24.07878 -23.83375 -22.91881 -21.24864 -20.94104 -19.52263 -19.33162 -18.45402 -18.39330 -17.37617 -16.76488 -16.59368 -16.08823 -15.94141 -15.57305 -15.36453 -15.18798 -14.88184 -14.65025 -14.25080 -14.05732 -13.93474 -13.78536 -13.38102 -13.08132 -12.78860 -12.63303 -12.44834 -12.42250 -12.29024 -12.06433 -11.96776 -11.69790 -11.66356 -11.42935 -11.18032 -10.83762 -10.68679 -10.61263 -10.36249 -9.98995 -9.86823 -9.58904 -9.52008 -8.62877 -8.22961 -8.17470 -6.32387 -3.83974 0.28097 1.59110 2.09101 2.11838 2.57136 2.88237 3.00858 3.04900 3.13805 3.56818 3.71909 4.06233 4.09852 4.24216 4.36508 4.52080 4.55121 4.59724 4.69135 4.72787 4.90845 4.93248 5.02908 5.17849 5.20051 5.32380 5.36405 5.51593 5.54742 5.65565 5.69709 5.81065 5.89512 5.90935 5.97087 6.17278 6.36743 6.43886 6.91231 7.00414 7.46974 7.51583 7.56417 7.63312 8.13109 8.57969 8.93650 9.40862 9.80701 10.80706 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030722 B = 0.001714 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.178886 B =16329.663502 C =16891.624231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.281 6.281 3 C 0.205 3.795 4 C -0.153 4.153 5 C -0.057 4.057 6 C 0.606 3.394 7 O -0.503 6.503 8 N -0.705 5.705 9 C 0.152 3.848 10 H 0.096 0.904 11 C -0.155 4.155 12 C 0.077 3.923 13 H 0.084 0.916 14 C -0.187 4.187 15 N -0.657 5.657 16 C 0.050 3.950 17 C 0.449 3.551 18 O -0.563 6.563 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 O 0.117 5.883 29 N -0.389 5.389 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.191 0.809 34 H 0.405 0.595 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.355 0.645 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.486 -23.420 -0.481 32.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.187 6.187 3 C 0.008 3.992 4 C -0.176 4.176 5 C -0.123 4.123 6 C 0.388 3.612 7 O -0.378 6.378 8 N -0.357 5.357 9 C 0.048 3.952 10 H 0.114 0.886 11 C -0.213 4.213 12 C -0.035 4.035 13 H 0.102 0.898 14 C -0.246 4.246 15 N -0.290 5.290 16 C -0.083 4.083 17 C 0.235 3.765 18 O -0.445 6.445 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 O 0.050 5.950 29 N -0.113 5.113 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.127 0.873 33 H 0.209 0.791 34 H 0.241 0.759 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.176 0.824 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.892 -23.913 -1.161 32.442 hybrid contribution -1.730 0.854 0.912 2.134 sum -23.622 -23.059 -0.249 33.012 Atomic orbital electron populations 1.23129 0.76378 1.04451 1.02530 1.86235 1.22908 1.20272 1.89251 1.21910 0.90656 0.85864 1.00797 1.22214 0.94485 0.95016 1.05851 1.24126 0.87059 0.93917 1.07224 1.16400 0.85010 0.82050 0.77693 1.90920 1.26335 1.71122 1.49406 1.45977 1.11189 1.05108 1.73386 1.21046 0.85142 0.90362 0.98624 0.88626 1.22069 1.03031 1.01945 0.94255 1.21751 0.92930 0.93404 0.95364 0.89774 1.22566 1.02044 1.02348 0.97610 1.59973 1.14424 1.02877 1.51684 1.21727 0.96890 0.88333 1.01338 1.19684 0.90222 0.82512 0.84105 1.90579 1.31305 1.68988 1.53644 1.42202 1.08266 1.05421 1.67077 1.19438 0.86746 0.89138 1.48106 0.86252 1.25042 0.97277 0.96172 0.97643 1.69623 1.25690 1.07460 1.49292 0.86672 0.83472 0.80410 0.78821 1.19697 1.20178 1.19477 1.84946 1.11786 1.29706 1.68514 1.74005 1.15741 0.96735 1.24784 0.92038 0.92039 0.87349 0.79146 0.75946 0.89061 0.92841 0.92882 0.91951 0.92088 0.92095 0.82425 0.89394 0.93588 0.79719 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.73 101.05 1.08 1.23 16 2 O -0.28 -2.30 10.57 -18.90 -0.20 -2.50 16 3 C 0.20 1.86 8.00 -16.72 -0.13 1.72 16 4 C -0.15 -1.30 10.97 -38.77 -0.43 -1.73 16 5 C -0.06 -0.49 7.29 -36.36 -0.26 -0.76 16 6 C 0.61 5.87 7.78 -12.47 -0.10 5.77 16 7 O -0.50 -6.52 16.57 5.30 0.09 -6.43 16 8 N -0.71 -5.59 4.38 -54.85 -0.24 -5.83 16 9 C 0.15 1.48 2.34 -67.93 -0.16 1.32 16 10 H 0.10 1.10 7.58 -51.93 -0.39 0.70 16 11 C -0.15 -1.68 9.33 37.16 0.35 -1.33 16 12 C 0.08 0.73 2.22 -67.72 -0.15 0.58 16 13 H 0.08 0.71 7.80 -51.93 -0.40 0.31 16 14 C -0.19 -1.57 9.01 37.16 0.33 -1.24 16 15 N -0.66 -8.81 5.11 -108.00 -0.55 -9.36 16 16 C 0.05 0.74 5.96 -4.98 -0.03 0.71 16 17 C 0.45 9.69 7.82 -10.99 -0.09 9.61 16 18 O -0.56 -14.58 15.78 5.54 0.09 -14.50 16 19 N -0.59 -13.59 5.09 -10.96 -0.06 -13.64 16 20 C -0.31 -8.49 10.16 -14.93 -0.15 -8.65 16 21 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 22 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 23 N -0.88 -25.46 13.96 55.50 0.77 -24.69 16 24 Si 0.88 18.97 27.74 -169.99 -4.71 14.26 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 28 O 0.12 0.99 11.03 15.51 0.17 1.17 16 29 N -0.39 -3.65 11.50 30.47 0.35 -3.30 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 32 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.19 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.41 2.27 8.21 -40.82 -0.34 1.94 16 35 H 0.09 1.18 7.60 -51.93 -0.39 0.79 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 39 H 0.06 0.42 7.45 -51.93 -0.39 0.03 16 40 H 0.06 0.53 7.45 -51.93 -0.39 0.14 16 41 H 0.36 5.11 8.17 -39.29 -0.32 4.79 16 42 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 43 H 0.05 0.59 7.44 -51.93 -0.39 0.20 16 44 H 0.37 7.43 5.76 -40.82 -0.24 7.20 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 387.67 15.07 5.84 5.84 Total: -1.00 -33.93 387.67 -4.45 -38.38 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.18 Total: 12.31 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 0.17 Total: 8.29 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.28 Total: -56.82 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.15 Total: -22.26 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.71 Total: 14.26 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.93 -4.45 -38.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282122619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.106 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds