Wall clock time and date at job start Sat Apr 11 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35721 * 116.99997 * 2 1 4 4 C 1.41858 * 126.78440 * 180.32417 * 3 2 1 5 5 C 1.36665 * 103.81036 * 180.14214 * 4 3 2 6 6 C 1.47546 * 126.87744 * 179.87998 * 5 4 3 7 7 O 1.21583 * 120.00207 * 359.71262 * 6 5 4 8 8 N 1.34779 * 119.99796 * 179.71146 * 6 5 4 9 9 C 1.46502 * 119.99830 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46938 * 325.00225 * 9 8 6 11 11 C 1.53000 * 109.46861 * 85.00099 * 9 8 6 12 12 C 1.52997 * 109.47004 * 205.00136 * 9 8 6 13 13 H 1.08993 * 109.47194 * 64.99579 * 12 9 8 14 14 C 1.53006 * 109.47127 * 304.99736 * 12 9 8 15 15 N 1.46902 * 109.47094 * 185.00358 * 12 9 8 16 16 C 1.46904 * 110.99949 * 205.00250 * 15 12 9 17 17 C 1.50702 * 109.47107 * 179.97438 * 16 15 12 18 18 O 1.21292 * 119.99798 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99799 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99562 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00283 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99450 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00132 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99511 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47557 * 59.99928 * 24 22 20 26 26 H 1.48501 * 109.46956 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47339 * 299.99380 * 24 22 20 28 28 O 1.34658 * 106.24105 * 359.61606 * 5 4 3 29 29 N 1.20869 * 111.63542 * 0.26441 * 28 5 4 30 30 H 1.08994 * 109.47600 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46794 * 299.99774 * 1 2 3 32 32 H 1.09000 * 109.47343 * 59.99360 * 1 2 3 33 33 H 1.07997 * 128.09589 * 0.02605 * 4 3 2 34 34 H 0.97001 * 120.00108 * 0.02562 * 8 6 5 35 35 H 1.08994 * 109.47725 * 60.00045 * 11 9 8 36 36 H 1.09002 * 109.46818 * 179.97438 * 11 9 8 37 37 H 1.08999 * 109.47412 * 299.99210 * 11 9 8 38 38 H 1.09001 * 109.46801 * 300.00272 * 14 12 9 39 39 H 1.09001 * 109.46998 * 59.99868 * 14 12 9 40 40 H 1.09000 * 109.47050 * 180.02562 * 14 12 9 41 41 H 1.00896 * 111.00544 * 81.04158 * 15 12 9 42 42 H 1.09002 * 109.46523 * 299.99312 * 16 15 12 43 43 H 1.08997 * 109.46880 * 59.99279 * 16 15 12 44 44 H 0.96997 * 120.00155 * 0.02562 * 19 17 16 45 45 H 0.97002 * 119.99553 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4431 1.4504 -0.0064 5 6 3.5391 2.8136 -0.0001 6 6 4.7786 3.6140 -0.0004 7 8 5.8605 3.0593 -0.0015 8 7 4.7115 4.9601 0.0005 9 6 5.9422 5.7548 0.0008 10 1 6.7042 5.2443 0.5897 11 6 6.4385 5.9268 -1.4362 12 6 5.6616 7.1293 0.6114 13 1 5.3934 7.0126 1.6613 14 6 4.5060 7.7945 -0.1392 15 7 6.8629 7.9678 0.5030 16 6 6.8730 9.0095 1.5388 17 6 8.1176 9.8473 1.3965 18 8 8.9177 9.6005 0.5189 19 7 8.3416 10.8707 2.2444 20 6 9.4742 11.6325 2.1153 21 1 10.1865 11.4128 1.3339 22 6 9.7053 12.6872 2.9898 23 7 8.8387 12.9542 3.9409 24 14 11.2480 13.7256 2.8134 25 1 11.2660 14.3616 1.4717 26 1 11.2586 14.7782 3.8609 27 1 12.4463 12.8622 2.9681 28 8 2.2758 3.2801 0.0005 29 7 1.4686 2.3805 0.0006 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 4.2441 0.7261 -0.0127 34 1 3.8483 5.4027 0.0017 35 1 5.6766 6.4373 -2.0252 36 1 7.3540 6.5185 -1.4361 37 1 6.6385 4.9476 -1.8712 38 1 4.7742 7.9112 -1.1892 39 1 3.6146 7.1724 -0.0588 40 1 4.3064 8.7739 0.2956 41 1 6.9394 8.3728 -0.4180 42 1 5.9933 9.6430 1.4254 43 1 6.8602 8.5427 2.5236 44 1 7.7020 11.0677 2.9464 45 1 9.0000 13.6908 4.5512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282122625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:30 Heat of formation + Delta-G solvation = -34.066002 kcal Electronic energy + Delta-G solvation = -28622.359184 eV Core-core repulsion = 24258.546274 eV Total energy + Delta-G solvation = -4363.812909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.44580 -40.27919 -39.37282 -38.53624 -37.44562 -34.71391 -33.85549 -33.66453 -32.51576 -31.28595 -30.75874 -29.15644 -28.16706 -26.43902 -25.33276 -24.31508 -23.81795 -23.30524 -21.29955 -20.03887 -19.55979 -19.23467 -18.42338 -17.92662 -17.34832 -16.71403 -16.41468 -16.06346 -15.95810 -15.63482 -15.41964 -15.15957 -14.76298 -14.55951 -14.37471 -14.13703 -13.88939 -13.82971 -13.31542 -13.09321 -12.75712 -12.42313 -12.40230 -12.30034 -12.19816 -12.01475 -11.88556 -11.55813 -11.44397 -11.07053 -11.02396 -10.92384 -10.64596 -10.44417 -10.33011 -10.21786 -9.83955 -9.50484 -9.45352 -8.50079 -8.11310 -7.96823 -6.42259 -3.83108 0.31366 1.62064 2.12799 2.14883 2.60823 2.92942 3.20177 3.26046 3.30474 3.59929 3.89731 4.08178 4.26741 4.30925 4.42505 4.54692 4.62082 4.67112 4.71802 4.73425 4.95526 5.04611 5.15609 5.20813 5.25090 5.29235 5.33076 5.54015 5.63586 5.68313 5.81877 5.87865 5.94417 5.99520 6.21143 6.25614 6.32763 6.39454 6.95147 7.13224 7.53339 7.54659 7.58462 7.67306 8.05354 8.60349 9.17219 9.53412 10.04683 10.75302 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.034026 B = 0.001624 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.693726 B =17234.331310 C =17526.721144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.281 6.281 3 C 0.205 3.795 4 C -0.153 4.153 5 C -0.057 4.057 6 C 0.605 3.395 7 O -0.503 6.503 8 N -0.707 5.707 9 C 0.152 3.848 10 H 0.103 0.897 11 C -0.165 4.165 12 C 0.077 3.923 13 H 0.085 0.915 14 C -0.191 4.191 15 N -0.658 5.658 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.273 1.273 28 O 0.117 5.883 29 N -0.389 5.389 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.191 0.809 34 H 0.405 0.595 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.354 0.646 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.075 -20.484 -6.797 28.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.187 6.187 3 C 0.008 3.992 4 C -0.176 4.176 5 C -0.123 4.123 6 C 0.387 3.613 7 O -0.377 6.377 8 N -0.360 5.360 9 C 0.048 3.952 10 H 0.121 0.879 11 C -0.223 4.223 12 C -0.034 4.034 13 H 0.103 0.897 14 C -0.250 4.250 15 N -0.291 5.291 16 C -0.081 4.081 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.199 5.199 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 O 0.050 5.950 29 N -0.113 5.113 30 H 0.126 0.874 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.209 0.791 34 H 0.242 0.758 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.174 0.826 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.472 -21.197 -6.872 28.944 hybrid contribution -0.545 1.077 0.157 1.217 sum -19.017 -20.121 -6.715 28.488 Atomic orbital electron populations 1.23126 0.76393 1.04435 1.02532 1.86231 1.22898 1.20284 1.89256 1.21909 0.90657 0.85858 1.00806 1.22213 0.94478 0.95009 1.05867 1.24137 0.87053 0.93928 1.07175 1.16438 0.85009 0.82132 0.77690 1.90922 1.26310 1.71163 1.49335 1.46137 1.11311 1.05086 1.73439 1.21061 0.85174 0.90673 0.98253 0.87937 1.22200 1.02484 1.02558 0.95092 1.21720 0.89374 0.92347 0.99971 0.89671 1.22643 0.98978 1.01576 1.01837 1.60006 1.36595 1.24226 1.08234 1.21708 0.96977 0.93027 0.96412 1.19783 0.88660 0.83595 0.85426 1.90528 1.48323 1.71446 1.36402 1.41850 1.21979 1.27058 1.29059 1.19661 0.99285 1.09043 1.15021 0.87941 1.25257 0.99078 0.97931 0.95600 1.69604 1.36016 1.30853 1.17824 0.85916 0.81316 0.79082 0.77900 1.19926 1.20998 1.19869 1.84943 1.11800 1.29719 1.68525 1.74003 1.15746 0.96732 1.24798 0.87363 0.92022 0.92058 0.79133 0.75836 0.92577 0.89582 0.92351 0.91488 0.92351 0.91765 0.82551 0.93678 0.89503 0.77470 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.73 101.05 1.08 1.24 16 2 O -0.28 -2.37 10.57 -18.87 -0.20 -2.57 16 3 C 0.20 1.92 8.00 -16.71 -0.13 1.79 16 4 C -0.15 -1.36 10.97 -38.77 -0.43 -1.78 16 5 C -0.06 -0.52 7.29 -36.36 -0.26 -0.78 16 6 C 0.61 6.20 7.78 -12.46 -0.10 6.11 16 7 O -0.50 -6.78 16.57 5.29 0.09 -6.69 16 8 N -0.71 -6.07 4.99 -54.84 -0.27 -6.34 16 9 C 0.15 1.58 2.63 -67.93 -0.18 1.41 16 10 H 0.10 1.30 7.58 -51.93 -0.39 0.91 16 11 C -0.17 -1.73 8.86 37.16 0.33 -1.40 16 12 C 0.08 0.80 2.64 -67.71 -0.18 0.63 16 13 H 0.09 0.87 7.80 -51.93 -0.41 0.46 16 14 C -0.19 -1.60 8.68 37.16 0.32 -1.28 16 15 N -0.66 -9.46 5.23 -107.99 -0.56 -10.03 16 16 C 0.05 0.84 5.97 -4.97 -0.03 0.81 16 17 C 0.44 10.03 7.82 -10.99 -0.09 9.94 16 18 O -0.58 -15.37 15.78 5.55 0.09 -15.28 16 19 N -0.56 -13.95 5.29 -10.96 -0.06 -14.00 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 24 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 O 0.12 1.04 11.03 15.51 0.17 1.21 16 29 N -0.39 -3.78 11.50 30.47 0.35 -3.43 16 30 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.19 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.40 2.60 6.40 -40.82 -0.26 2.34 16 35 H 0.06 0.51 6.56 -51.93 -0.34 0.16 16 36 H 0.09 1.03 7.13 -51.93 -0.37 0.66 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.56 6.55 -51.93 -0.34 0.22 16 39 H 0.06 0.36 6.29 -51.93 -0.33 0.04 16 40 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 41 H 0.35 5.26 7.39 -39.29 -0.29 4.97 16 42 H 0.05 0.65 7.44 -51.93 -0.39 0.27 16 43 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 44 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -32.72 384.05 -4.67 -37.39 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -5.87 Total: 12.86 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 0.10 Total: 8.75 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.18 Total: -57.31 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.15 Total: -23.33 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.72 -4.67 -37.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282122625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.327 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds