Wall clock time and date at job start Sat Apr 11 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35721 * 116.99997 * 2 1 4 4 C 1.41858 * 126.78440 * 180.32417 * 3 2 1 5 5 C 1.36665 * 103.81036 * 180.14214 * 4 3 2 6 6 C 1.47546 * 126.87744 * 179.87998 * 5 4 3 7 7 O 1.21583 * 120.00207 * 359.71262 * 6 5 4 8 8 N 1.34779 * 119.99796 * 179.71146 * 6 5 4 9 9 C 1.46502 * 119.99830 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46938 * 325.00225 * 9 8 6 11 11 C 1.53000 * 109.46861 * 85.00099 * 9 8 6 12 12 C 1.52997 * 109.47004 * 205.00136 * 9 8 6 13 13 H 1.08993 * 109.47194 * 64.99579 * 12 9 8 14 14 C 1.53006 * 109.47127 * 304.99736 * 12 9 8 15 15 N 1.46902 * 109.47094 * 185.00358 * 12 9 8 16 16 C 1.46904 * 110.99949 * 205.00250 * 15 12 9 17 17 C 1.50702 * 109.47107 * 179.97438 * 16 15 12 18 18 O 1.21292 * 119.99798 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99799 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99562 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00283 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99450 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00132 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99511 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47557 * 59.99928 * 24 22 20 26 26 H 1.48501 * 109.46956 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47339 * 299.99380 * 24 22 20 28 28 O 1.34658 * 106.24105 * 359.61606 * 5 4 3 29 29 N 1.20869 * 111.63542 * 0.26441 * 28 5 4 30 30 H 1.08994 * 109.47600 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46794 * 299.99774 * 1 2 3 32 32 H 1.09000 * 109.47343 * 59.99360 * 1 2 3 33 33 H 1.07997 * 128.09589 * 0.02605 * 4 3 2 34 34 H 0.97001 * 120.00108 * 0.02562 * 8 6 5 35 35 H 1.08994 * 109.47725 * 60.00045 * 11 9 8 36 36 H 1.09002 * 109.46818 * 179.97438 * 11 9 8 37 37 H 1.08999 * 109.47412 * 299.99210 * 11 9 8 38 38 H 1.09001 * 109.46801 * 300.00272 * 14 12 9 39 39 H 1.09001 * 109.46998 * 59.99868 * 14 12 9 40 40 H 1.09000 * 109.47050 * 180.02562 * 14 12 9 41 41 H 1.00896 * 111.00544 * 81.04158 * 15 12 9 42 42 H 1.09002 * 109.46523 * 299.99312 * 16 15 12 43 43 H 1.08997 * 109.46880 * 59.99279 * 16 15 12 44 44 H 0.96997 * 120.00155 * 0.02562 * 19 17 16 45 45 H 0.97002 * 119.99553 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4431 1.4504 -0.0064 5 6 3.5391 2.8136 -0.0001 6 6 4.7786 3.6140 -0.0004 7 8 5.8605 3.0593 -0.0015 8 7 4.7115 4.9601 0.0005 9 6 5.9422 5.7548 0.0008 10 1 6.7042 5.2443 0.5897 11 6 6.4385 5.9268 -1.4362 12 6 5.6616 7.1293 0.6114 13 1 5.3934 7.0126 1.6613 14 6 4.5060 7.7945 -0.1392 15 7 6.8629 7.9678 0.5030 16 6 6.8730 9.0095 1.5388 17 6 8.1176 9.8473 1.3965 18 8 8.9177 9.6005 0.5189 19 7 8.3416 10.8707 2.2444 20 6 9.4742 11.6325 2.1153 21 1 10.1865 11.4128 1.3339 22 6 9.7053 12.6872 2.9898 23 7 8.8387 12.9542 3.9409 24 14 11.2480 13.7256 2.8134 25 1 11.2660 14.3616 1.4717 26 1 11.2586 14.7782 3.8609 27 1 12.4463 12.8622 2.9681 28 8 2.2758 3.2801 0.0005 29 7 1.4686 2.3805 0.0006 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 4.2441 0.7261 -0.0127 34 1 3.8483 5.4027 0.0017 35 1 5.6766 6.4373 -2.0252 36 1 7.3540 6.5185 -1.4361 37 1 6.6385 4.9476 -1.8712 38 1 4.7742 7.9112 -1.1892 39 1 3.6146 7.1724 -0.0588 40 1 4.3064 8.7739 0.2956 41 1 6.9394 8.3728 -0.4180 42 1 5.9933 9.6430 1.4254 43 1 6.8602 8.5427 2.5236 44 1 7.7020 11.0677 2.9464 45 1 9.0000 13.6908 4.5512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282122625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:29 Heat of formation + Delta-G solvation = -61.766909 kcal Electronic energy + Delta-G solvation = -28623.560385 eV Core-core repulsion = 24258.546274 eV Total energy + Delta-G solvation = -4365.014111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.15309 -41.15033 -40.14976 -39.96433 -38.61828 -36.06725 -35.48541 -34.36813 -33.38288 -33.18107 -31.77001 -30.01207 -28.62855 -27.95651 -26.18010 -25.82554 -24.56213 -24.26292 -22.02692 -21.12257 -20.88040 -20.25043 -19.88615 -19.12947 -18.00282 -17.84670 -17.28629 -17.24720 -16.83831 -16.63451 -16.38256 -16.15750 -16.11467 -15.78732 -15.57338 -15.24299 -15.12476 -14.79746 -14.62202 -14.10358 -13.87241 -13.47559 -13.30311 -13.19828 -13.12532 -13.02896 -12.92514 -12.85391 -12.60566 -12.52550 -12.40423 -12.11085 -11.88054 -11.81639 -11.53158 -11.47063 -11.06491 -10.49086 -10.35581 -10.23053 -9.98248 -9.27586 -8.44045 -5.92357 -0.41926 0.91802 1.35202 1.41700 1.43765 1.54084 1.55104 1.81021 2.09649 2.17578 2.32393 2.91881 3.02794 3.23800 3.57681 3.60601 3.69869 3.84064 3.93618 3.97055 4.23830 4.25878 4.26701 4.33674 4.48077 4.51250 4.56145 4.58434 4.63171 4.67172 4.75295 4.87098 5.00891 5.02074 5.24246 5.37318 5.43563 5.47450 5.80951 5.91659 6.12079 6.22003 6.44924 6.63487 6.83507 6.91953 7.15827 7.60264 8.15737 8.72952 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.034026 B = 0.001624 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.693726 B =17234.331310 C =17526.721144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.291 6.291 3 C 0.200 3.800 4 C -0.154 4.154 5 C -0.057 4.057 6 C 0.610 3.390 7 O -0.539 6.539 8 N -0.691 5.691 9 C 0.159 3.841 10 H 0.078 0.922 11 C -0.160 4.160 12 C 0.082 3.918 13 H 0.094 0.906 14 C -0.187 4.187 15 N -0.674 5.674 16 C 0.067 3.933 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.574 5.574 20 C -0.335 4.335 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.274 1.274 28 O 0.123 5.877 29 N -0.397 5.397 30 H 0.135 0.865 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.202 0.798 34 H 0.418 0.582 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.350 0.650 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.397 0.603 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.883 -20.718 -6.682 30.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.197 6.197 3 C 0.003 3.997 4 C -0.176 4.176 5 C -0.123 4.123 6 C 0.393 3.607 7 O -0.416 6.416 8 N -0.344 5.344 9 C 0.055 3.945 10 H 0.096 0.904 11 C -0.218 4.218 12 C -0.028 4.028 13 H 0.112 0.888 14 C -0.246 4.246 15 N -0.307 5.307 16 C -0.065 4.065 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.199 1.199 28 O 0.056 5.944 29 N -0.121 5.121 30 H 0.153 0.847 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.219 0.781 34 H 0.258 0.742 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.170 0.830 42 H 0.090 0.910 43 H 0.121 0.879 44 H 0.230 0.770 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.347 -21.433 -6.745 30.313 hybrid contribution -0.055 1.058 0.091 1.063 sum -20.402 -20.375 -6.654 29.592 Atomic orbital electron populations 1.23391 0.74756 1.06330 1.02584 1.86232 1.24571 1.19841 1.89090 1.22049 0.90883 0.86121 1.00673 1.22434 0.94789 0.95226 1.05166 1.23853 0.86795 0.93833 1.07799 1.16476 0.84810 0.82376 0.76992 1.90912 1.27703 1.71865 1.51100 1.45934 1.11390 1.04521 1.72541 1.20831 0.85291 0.90644 0.97772 0.90387 1.22127 1.02306 1.01944 0.95406 1.21721 0.88653 0.91472 1.00949 0.88792 1.22597 0.98853 1.01715 1.01444 1.59941 1.39395 1.23837 1.07489 1.21545 0.94117 0.93002 0.97826 1.20934 0.89950 0.82920 0.83716 1.90499 1.50325 1.72308 1.37785 1.41921 1.21615 1.27718 1.29850 1.19633 1.00463 1.10807 1.15526 0.90338 1.25995 1.01781 0.98413 0.94953 1.69662 1.37131 1.31232 1.18032 0.85017 0.77699 0.77642 0.78161 1.19669 1.19571 1.19904 1.84932 1.11508 1.29480 1.68438 1.73978 1.15949 0.97039 1.25154 0.84652 0.91983 0.91943 0.78086 0.74211 0.90695 0.91347 0.93191 0.91344 0.89714 0.91909 0.82994 0.91002 0.87858 0.76960 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.73 113.37 1.22 1.42 16 2 O -0.29 -4.54 10.57 -90.43 -0.96 -5.50 16 3 C 0.20 3.50 8.00 85.78 0.69 4.19 16 4 C -0.15 -2.57 10.97 22.80 0.25 -2.32 16 5 C -0.06 -0.96 7.29 24.36 0.18 -0.78 16 6 C 0.61 11.92 7.78 86.70 0.67 12.60 16 7 O -0.54 -14.47 16.57 -3.98 -0.07 -14.54 16 8 N -0.69 -10.68 4.99 -445.69 -2.22 -12.90 16 9 C 0.16 3.15 2.63 44.99 0.12 3.27 16 10 H 0.08 1.98 7.58 -2.39 -0.02 1.97 16 11 C -0.16 -3.25 8.86 71.98 0.64 -2.62 16 12 C 0.08 1.56 2.64 44.92 0.12 1.67 16 13 H 0.09 1.65 7.80 -2.39 -0.02 1.64 16 14 C -0.19 -2.58 8.68 71.98 0.62 -1.95 16 15 N -0.67 -18.72 5.23 -495.56 -2.59 -21.31 16 16 C 0.07 2.10 5.97 85.56 0.51 2.61 16 17 C 0.44 20.05 7.82 87.66 0.69 20.74 16 18 O -0.62 -33.62 15.78 -3.07 -0.05 -33.67 16 19 N -0.57 -28.76 5.29 -306.98 -1.62 -30.39 16 20 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 23 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 24 Si 0.99 42.66 29.55 68.60 2.03 44.69 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 O 0.12 2.00 11.03 65.68 0.72 2.72 16 29 N -0.40 -7.15 11.50 -172.02 -1.98 -9.13 16 30 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.20 2.80 8.06 -2.91 -0.02 2.78 16 34 H 0.42 4.21 6.40 -92.71 -0.59 3.62 16 35 H 0.07 1.22 6.56 -2.39 -0.02 1.21 16 36 H 0.07 1.66 7.13 -2.39 -0.02 1.64 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 0.95 6.55 -2.39 -0.02 0.94 16 39 H 0.08 0.73 6.29 -2.39 -0.02 0.71 16 40 H 0.06 0.93 7.45 -2.39 -0.02 0.91 16 41 H 0.35 10.21 7.39 -89.70 -0.66 9.55 16 42 H 0.07 1.90 7.44 -2.39 -0.02 1.88 16 43 H 0.10 2.93 8.05 -2.39 -0.02 2.91 16 44 H 0.40 18.80 7.90 -92.71 -0.73 18.06 16 45 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -71.72 384.05 -0.38 -72.11 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: -0.91 Total: 36.00 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 6.98 Total: 20.69 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -8.13 Total: -122.50 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -0.35 Total: -50.98 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -71.72 -0.38 -72.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282122625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.340 kcal (2) G-P(sol) polarization free energy of solvation -71.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds