Wall clock time and date at job start Sat Apr 11 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35350 * 116.99902 * 2 1 4 4 N 1.30550 * 125.44493 * 179.97438 * 3 2 1 5 5 C 1.36334 * 108.38248 * 180.02562 * 4 3 2 6 6 C 1.47365 * 126.41527 * 179.97438 * 5 4 3 7 7 O 1.21620 * 120.00469 * 173.61348 * 6 5 4 8 8 N 1.34779 * 119.99845 * 353.60898 * 6 5 4 9 9 C 1.46499 * 119.99825 * 4.33917 * 8 6 5 10 10 C 1.46498 * 119.99946 * 184.33717 * 8 6 5 11 11 C 1.53004 * 109.47001 * 85.67161 * 10 8 6 12 12 H 1.08990 * 109.47228 * 297.81882 * 11 10 8 13 13 C 1.52997 * 109.46892 * 177.81734 * 11 10 8 14 14 N 1.46901 * 109.46733 * 57.82012 * 11 10 8 15 15 C 1.46904 * 110.99682 * 207.40362 * 14 11 10 16 16 C 1.50701 * 109.47189 * 180.02562 * 15 14 11 17 17 O 1.21292 * 119.99764 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00050 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99824 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99939 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99588 * 180.02562 * 19 18 16 22 22 N 1.31403 * 120.00210 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99468 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47098 * 60.00390 * 23 21 19 25 25 H 1.48506 * 109.46862 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47434 * 299.99865 * 23 21 19 27 27 C 1.35918 * 107.17385 * 0.02562 * 5 4 3 28 28 O 1.34201 * 125.44806 * 0.04174 * 3 2 1 29 29 H 1.08998 * 109.46993 * 300.00428 * 1 2 3 30 30 H 1.08998 * 109.46787 * 60.01139 * 1 2 3 31 31 H 1.09004 * 109.46742 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47026 * 86.24815 * 9 8 6 33 33 H 1.08996 * 109.47015 * 206.24212 * 9 8 6 34 34 H 1.08994 * 109.47435 * 326.24397 * 9 8 6 35 35 H 1.08999 * 109.46905 * 205.67310 * 10 8 6 36 36 H 1.09000 * 109.47511 * 325.67042 * 10 8 6 37 37 H 1.08992 * 109.47359 * 60.00255 * 13 11 10 38 38 H 1.09000 * 109.47018 * 180.02562 * 13 11 10 39 39 H 1.08999 * 109.47435 * 299.99870 * 13 11 10 40 40 H 1.00899 * 111.00542 * 331.35142 * 14 11 10 41 41 H 1.09009 * 109.47063 * 299.99686 * 15 14 11 42 42 H 1.09000 * 109.47525 * 59.99805 * 15 14 11 43 43 H 0.96996 * 119.99948 * 0.02562 * 18 16 15 44 44 H 0.97005 * 120.00175 * 180.02562 * 22 21 19 45 45 H 1.08001 * 126.45569 * 179.73855 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3977 0.0005 5 6 3.5701 2.7406 0.0009 6 6 4.8892 3.3977 0.0020 7 8 4.9670 4.6057 -0.1149 8 7 6.0094 2.6598 0.1327 9 6 5.9226 1.1981 0.1780 10 6 7.3139 3.3195 0.2293 11 6 7.5870 3.6986 1.6863 12 1 6.8316 4.4075 2.0250 13 6 8.9724 4.3384 1.7957 14 7 7.5370 2.4925 2.5236 15 6 7.1463 2.8234 3.9005 16 6 7.1066 1.5644 4.7278 17 8 7.3768 0.4965 4.2201 18 7 6.7710 1.6251 6.0317 19 6 6.7344 0.4797 6.7841 20 1 6.9749 -0.4712 6.3321 21 6 6.3878 0.5423 8.1283 22 7 6.0947 1.6992 8.6781 23 14 6.3387 -1.0184 9.1536 24 1 7.6826 -1.6498 9.1587 25 1 5.9443 -0.6838 10.5457 26 1 5.3505 -1.9620 8.5719 27 6 2.3603 3.3600 0.0012 28 8 1.4227 2.3958 0.0008 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 5.9287 0.8021 -0.8375 33 1 6.7754 0.8004 0.7281 34 1 4.9992 0.9042 0.6770 35 1 8.0912 2.6406 -0.1213 36 1 7.3126 4.2192 -0.3860 37 1 9.0095 5.2332 1.1745 38 1 9.1671 4.6080 2.8337 39 1 9.7279 3.6294 1.4571 40 1 6.9163 1.8027 2.1275 41 1 7.8719 3.5157 4.3277 42 1 6.1600 3.2874 3.8968 43 1 6.5546 2.4791 6.4375 44 1 5.8531 1.7429 9.6165 45 1 2.1849 4.4257 0.0055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283649177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:43 Heat of formation + Delta-G solvation = -53.315251 kcal Electronic energy + Delta-G solvation = -30048.041080 eV Core-core repulsion = 25683.393461 eV Total energy + Delta-G solvation = -4364.647619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.75311 -40.07801 -39.11050 -38.27857 -36.87626 -35.45849 -34.49968 -33.81083 -31.32946 -30.94130 -30.35334 -27.82788 -27.39040 -26.76211 -26.07643 -24.11721 -23.41882 -22.71445 -20.87353 -20.06913 -19.20523 -18.56319 -17.85941 -17.82561 -17.37784 -16.75536 -16.40728 -16.26449 -15.67426 -15.57543 -15.38506 -15.07650 -14.71846 -14.41404 -13.95410 -13.77992 -13.74058 -13.54198 -12.85668 -12.77704 -12.68425 -12.60039 -12.43514 -12.29968 -11.87027 -11.78619 -11.68655 -11.58555 -11.36398 -11.26679 -11.05397 -10.86115 -10.54141 -10.41884 -10.17821 -10.17078 -9.46234 -9.06030 -8.66700 -8.38144 -7.99921 -7.91413 -6.37886 -3.78548 0.83292 1.61251 1.77582 2.41637 2.81756 3.09171 3.22396 3.27514 3.32221 3.95968 4.05515 4.14384 4.38974 4.45660 4.57805 4.60809 4.76093 4.93423 4.98560 5.08121 5.17584 5.25219 5.29169 5.32632 5.39342 5.49328 5.61264 5.66787 5.80673 5.85819 5.91172 6.06643 6.10017 6.12851 6.28520 6.33513 6.44901 6.53793 7.09453 7.27419 7.33549 7.58402 7.76985 7.93282 8.10293 8.65731 9.21579 9.58759 10.10525 10.79927 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008469 B = 0.003346 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.510065 B = 8366.084342 C =10744.311346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.242 6.242 3 C 0.381 3.619 4 N -0.449 5.449 5 C -0.045 4.045 6 C 0.601 3.399 7 O -0.536 6.536 8 N -0.598 5.598 9 C 0.058 3.942 10 C 0.113 3.887 11 C 0.064 3.936 12 H 0.048 0.952 13 C -0.136 4.136 14 N -0.665 5.665 15 C 0.051 3.949 16 C 0.443 3.557 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.004 3.996 28 O -0.225 6.225 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.349 0.651 41 H 0.086 0.914 42 H 0.039 0.961 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.720 4.215 -19.449 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.150 6.150 3 C 0.136 3.864 4 N -0.195 5.195 5 C -0.164 4.164 6 C 0.388 3.612 7 O -0.414 6.414 8 N -0.329 5.329 9 C -0.084 4.084 10 C -0.010 4.010 11 C -0.047 4.047 12 H 0.066 0.934 13 C -0.194 4.194 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.228 3.772 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.200 1.200 27 C -0.068 4.068 28 O -0.116 6.116 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.138 0.862 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.172 0.828 41 H 0.104 0.896 42 H 0.057 0.943 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -8.452 3.405 -19.520 21.542 hybrid contribution -1.931 0.439 0.888 2.170 sum -10.383 3.844 -18.632 21.673 Atomic orbital electron populations 1.23322 0.75045 1.05791 1.02989 1.86414 1.23724 1.15784 1.89058 1.23708 0.85853 0.79501 0.97343 1.71413 1.08847 1.15246 1.23994 1.21628 0.95721 0.88498 1.10525 1.16756 0.82003 0.85672 0.76750 1.90819 1.86446 1.13009 1.51087 1.47727 1.06060 1.08317 1.70770 1.22533 1.05797 0.77320 1.02800 1.21845 0.83257 0.99110 0.96785 1.21956 0.97895 0.92490 0.92331 0.93420 1.21719 0.95946 0.99636 1.02128 1.60347 1.58121 1.10603 1.01106 1.21715 0.99106 0.97329 0.90070 1.19814 0.84204 0.89952 0.83231 1.90507 1.53921 1.30428 1.71804 1.41853 1.60090 1.10440 1.07724 1.19659 1.43517 0.88398 0.91265 0.87973 1.25252 0.97212 0.98309 0.97162 1.69607 1.46763 1.24272 1.13783 0.85926 0.78921 0.81155 0.78254 1.19871 1.21010 1.19954 1.24917 0.84856 0.93786 1.03275 1.84386 1.39572 1.15913 1.71756 0.91261 0.91458 0.86206 0.92284 0.90042 0.87122 0.89005 0.89166 0.92660 0.92245 0.91780 0.82786 0.89625 0.94286 0.77506 0.91875 0.74817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 10.73 101.05 1.08 1.21 16 2 O -0.24 -2.43 10.55 -40.97 -0.43 -2.86 16 3 C 0.38 4.44 8.98 52.22 0.47 4.91 16 4 N -0.45 -6.02 7.84 -11.72 -0.09 -6.11 16 5 C -0.05 -0.59 6.67 -82.98 -0.55 -1.14 16 6 C 0.60 8.57 7.64 -12.55 -0.10 8.47 16 7 O -0.54 -8.42 16.52 5.26 0.09 -8.33 16 8 N -0.60 -8.01 2.57 -182.87 -0.47 -8.48 16 9 C 0.06 0.75 8.61 59.85 0.52 1.27 16 10 C 0.11 1.39 5.05 -4.04 -0.02 1.37 16 11 C 0.06 0.91 2.91 -67.71 -0.20 0.71 16 12 H 0.05 0.73 7.76 -51.93 -0.40 0.33 16 13 C -0.14 -1.66 9.45 37.16 0.35 -1.31 16 14 N -0.67 -11.59 5.94 -107.99 -0.64 -12.23 16 15 C 0.05 0.97 5.96 -4.97 -0.03 0.94 16 16 C 0.44 10.89 7.82 -10.98 -0.09 10.80 16 17 O -0.58 -16.15 15.78 5.55 0.09 -16.07 16 18 N -0.56 -14.78 5.29 -10.96 -0.06 -14.84 16 19 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 23 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 C 0.00 0.04 11.94 29.90 0.36 0.40 16 28 O -0.23 -2.27 10.20 -17.75 -0.18 -2.45 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.12 6.48 -51.93 -0.34 0.78 16 34 H 0.11 1.62 5.06 -51.93 -0.26 1.36 16 35 H 0.09 1.01 8.04 -51.93 -0.42 0.59 16 36 H 0.09 1.06 7.50 -51.93 -0.39 0.67 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.77 7.62 -51.93 -0.40 0.37 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.35 6.30 4.53 -39.29 -0.18 6.12 16 41 H 0.09 1.53 7.61 -51.92 -0.40 1.13 16 42 H 0.04 0.72 8.05 -51.93 -0.42 0.30 16 43 H 0.39 9.87 7.90 -40.82 -0.32 9.55 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.24 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -34.78 382.46 -4.67 -39.45 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -5.99 Total: 14.63 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 1.55 Total: 19.48 kcal Atomic # 7 Polarization: -65.41 SS G_CDS: -0.54 Total: -65.94 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.44 Total: -29.71 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.78 -4.67 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283649177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.867 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds