Wall clock time and date at job start Sat Apr 11 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35350 * 116.99902 * 2 1 4 4 N 1.30550 * 125.44493 * 179.97438 * 3 2 1 5 5 C 1.36334 * 108.38248 * 180.02562 * 4 3 2 6 6 C 1.47365 * 126.41527 * 179.97438 * 5 4 3 7 7 O 1.21620 * 120.00469 * 173.61348 * 6 5 4 8 8 N 1.34779 * 119.99845 * 353.60898 * 6 5 4 9 9 C 1.46499 * 119.99825 * 4.33917 * 8 6 5 10 10 C 1.46498 * 119.99946 * 184.33717 * 8 6 5 11 11 C 1.53004 * 109.47001 * 85.67161 * 10 8 6 12 12 H 1.08990 * 109.47228 * 297.81882 * 11 10 8 13 13 C 1.52997 * 109.46892 * 177.81734 * 11 10 8 14 14 N 1.46901 * 109.46733 * 57.82012 * 11 10 8 15 15 C 1.46904 * 110.99682 * 207.40362 * 14 11 10 16 16 C 1.50701 * 109.47189 * 180.02562 * 15 14 11 17 17 O 1.21292 * 119.99764 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00050 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99824 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99939 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99588 * 180.02562 * 19 18 16 22 22 N 1.31403 * 120.00210 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99468 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47098 * 60.00390 * 23 21 19 25 25 H 1.48506 * 109.46862 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47434 * 299.99865 * 23 21 19 27 27 C 1.35918 * 107.17385 * 0.02562 * 5 4 3 28 28 O 1.34201 * 125.44806 * 0.04174 * 3 2 1 29 29 H 1.08998 * 109.46993 * 300.00428 * 1 2 3 30 30 H 1.08998 * 109.46787 * 60.01139 * 1 2 3 31 31 H 1.09004 * 109.46742 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47026 * 86.24815 * 9 8 6 33 33 H 1.08996 * 109.47015 * 206.24212 * 9 8 6 34 34 H 1.08994 * 109.47435 * 326.24397 * 9 8 6 35 35 H 1.08999 * 109.46905 * 205.67310 * 10 8 6 36 36 H 1.09000 * 109.47511 * 325.67042 * 10 8 6 37 37 H 1.08992 * 109.47359 * 60.00255 * 13 11 10 38 38 H 1.09000 * 109.47018 * 180.02562 * 13 11 10 39 39 H 1.08999 * 109.47435 * 299.99870 * 13 11 10 40 40 H 1.00899 * 111.00542 * 331.35142 * 14 11 10 41 41 H 1.09009 * 109.47063 * 299.99686 * 15 14 11 42 42 H 1.09000 * 109.47525 * 59.99805 * 15 14 11 43 43 H 0.96996 * 119.99948 * 0.02562 * 18 16 15 44 44 H 0.97005 * 120.00175 * 180.02562 * 22 21 19 45 45 H 1.08001 * 126.45569 * 179.73855 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3977 0.0005 5 6 3.5701 2.7406 0.0009 6 6 4.8892 3.3977 0.0020 7 8 4.9670 4.6057 -0.1149 8 7 6.0094 2.6598 0.1327 9 6 5.9226 1.1981 0.1780 10 6 7.3139 3.3195 0.2293 11 6 7.5870 3.6986 1.6863 12 1 6.8316 4.4075 2.0250 13 6 8.9724 4.3384 1.7957 14 7 7.5370 2.4925 2.5236 15 6 7.1463 2.8234 3.9005 16 6 7.1066 1.5644 4.7278 17 8 7.3768 0.4965 4.2201 18 7 6.7710 1.6251 6.0317 19 6 6.7344 0.4797 6.7841 20 1 6.9749 -0.4712 6.3321 21 6 6.3878 0.5423 8.1283 22 7 6.0947 1.6992 8.6781 23 14 6.3387 -1.0184 9.1536 24 1 7.6826 -1.6498 9.1587 25 1 5.9443 -0.6838 10.5457 26 1 5.3505 -1.9620 8.5719 27 6 2.3603 3.3600 0.0012 28 8 1.4227 2.3958 0.0008 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 5.9287 0.8021 -0.8375 33 1 6.7754 0.8004 0.7281 34 1 4.9992 0.9042 0.6770 35 1 8.0912 2.6406 -0.1213 36 1 7.3126 4.2192 -0.3860 37 1 9.0095 5.2332 1.1745 38 1 9.1671 4.6080 2.8337 39 1 9.7279 3.6294 1.4571 40 1 6.9163 1.8027 2.1275 41 1 7.8719 3.5157 4.3277 42 1 6.1600 3.2874 3.8968 43 1 6.5546 2.4791 6.4375 44 1 5.8531 1.7429 9.6165 45 1 2.1849 4.4257 0.0055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283649177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:43 Heat of formation + Delta-G solvation = -81.967761 kcal Electronic energy + Delta-G solvation = -30049.283546 eV Core-core repulsion = 25683.393461 eV Total energy + Delta-G solvation = -4365.890085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.59986 -41.14991 -40.16140 -39.79936 -38.17013 -36.44451 -36.00735 -35.48042 -33.31130 -32.33792 -31.21342 -28.45169 -28.32615 -28.20114 -27.40479 -25.83584 -24.47816 -23.56071 -21.89998 -21.19863 -20.99092 -19.93351 -19.47012 -18.64833 -18.37532 -17.91030 -17.51658 -17.35495 -17.10199 -16.58907 -16.41625 -16.31134 -16.13079 -15.93780 -15.58507 -15.21205 -14.91268 -14.63171 -14.27563 -13.98621 -13.81496 -13.71358 -13.48624 -13.31110 -13.12358 -13.01064 -12.91333 -12.82200 -12.80159 -12.54973 -12.43108 -12.13541 -12.11799 -12.02320 -11.59547 -11.51066 -11.18097 -10.36730 -10.03441 -9.97990 -9.64727 -9.40371 -8.47261 -5.96554 -0.03526 0.82786 0.87280 1.39362 1.41074 1.52496 1.63563 1.88647 2.01986 2.08602 2.28436 2.87688 3.14092 3.19268 3.47281 3.70716 3.85588 3.98698 4.14592 4.17880 4.20739 4.22404 4.30759 4.33706 4.38434 4.44400 4.50102 4.55088 4.60120 4.62706 4.68146 4.81847 4.94893 5.04667 5.13660 5.33443 5.39675 5.49397 5.62570 5.85795 6.04213 6.12217 6.37556 6.40656 6.57950 6.88893 7.10522 7.53124 8.08020 8.70078 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008469 B = 0.003346 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.510065 B = 8366.084342 C =10744.311346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.257 6.257 3 C 0.378 3.622 4 N -0.476 5.476 5 C -0.080 4.080 6 C 0.598 3.402 7 O -0.556 6.556 8 N -0.599 5.599 9 C 0.068 3.932 10 C 0.114 3.886 11 C 0.067 3.933 12 H 0.037 0.963 13 C -0.131 4.131 14 N -0.673 5.673 15 C 0.065 3.935 16 C 0.439 3.561 17 O -0.617 6.617 18 N -0.572 5.572 19 C -0.336 4.336 20 H 0.081 0.919 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.271 1.271 27 C 0.029 3.971 28 O -0.216 6.216 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.144 0.856 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.344 0.656 41 H 0.103 0.897 42 H 0.049 0.951 43 H 0.395 0.605 44 H 0.278 0.722 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.450 4.708 -19.747 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.165 6.165 3 C 0.132 3.868 4 N -0.223 5.223 5 C -0.198 4.198 6 C 0.386 3.614 7 O -0.436 6.436 8 N -0.330 5.330 9 C -0.075 4.075 10 C -0.008 4.008 11 C -0.044 4.044 12 H 0.055 0.945 13 C -0.189 4.189 14 N -0.309 5.309 15 C -0.068 4.068 16 C 0.226 3.774 17 O -0.504 6.504 18 N -0.209 5.209 19 C -0.465 4.465 20 H 0.098 0.902 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.196 1.196 25 H -0.194 1.194 26 H -0.196 1.196 27 C -0.044 4.044 28 O -0.106 6.106 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.162 0.838 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.166 0.834 41 H 0.121 0.879 42 H 0.067 0.933 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -9.186 3.917 -19.823 22.197 hybrid contribution -1.777 0.290 0.942 2.032 sum -10.963 4.207 -18.881 22.235 Atomic orbital electron populations 1.23697 0.72658 1.07732 1.03874 1.86426 1.26157 1.15090 1.88855 1.23789 0.85799 0.80255 0.96915 1.71305 1.10094 1.15764 1.25092 1.21606 0.96071 0.88808 1.13302 1.16947 0.82587 0.85541 0.76286 1.90791 1.86857 1.13630 1.52302 1.47800 1.06404 1.08335 1.70441 1.22400 1.04522 0.77340 1.03227 1.21911 0.83249 0.99910 0.95710 1.22051 0.98790 0.90865 0.92669 0.94519 1.21699 0.94544 1.00519 1.02187 1.60412 1.57844 1.12087 1.00578 1.21563 1.00273 0.94535 0.90442 1.20720 0.82399 0.91282 0.82969 1.90475 1.55086 1.32404 1.72406 1.41918 1.60604 1.10028 1.08356 1.19663 1.45879 0.88498 0.92451 0.90150 1.26070 0.95975 1.01601 0.97562 1.69674 1.46318 1.25826 1.14374 0.84973 0.78933 0.77298 0.77035 1.19601 1.19416 1.19606 1.25554 0.83942 0.94791 1.00100 1.84420 1.39211 1.15573 1.71423 0.90900 0.90024 0.83795 0.90940 0.90970 0.88604 0.87538 0.88107 0.90231 0.93050 0.91549 0.83399 0.87857 0.93326 0.77149 0.91259 0.71682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 10.73 113.37 1.22 1.34 16 2 O -0.26 -5.03 10.55 -64.19 -0.68 -5.70 16 3 C 0.38 8.66 8.98 130.43 1.17 9.83 16 4 N -0.48 -12.84 7.84 -419.39 -3.29 -16.13 16 5 C -0.08 -2.06 6.67 40.31 0.27 -1.79 16 6 C 0.60 16.83 7.64 86.65 0.66 17.49 16 7 O -0.56 -17.04 16.52 -4.10 -0.07 -17.11 16 8 N -0.60 -15.87 2.57 -850.74 -2.19 -18.05 16 9 C 0.07 1.79 8.61 127.77 1.10 2.89 16 10 C 0.11 2.69 5.05 86.38 0.44 3.12 16 11 C 0.07 1.80 2.91 44.92 0.13 1.93 16 12 H 0.04 1.09 7.76 -2.39 -0.02 1.07 16 13 C -0.13 -2.96 9.45 71.98 0.68 -2.28 16 14 N -0.67 -23.25 5.94 -495.56 -2.94 -26.19 16 15 C 0.06 2.47 5.96 85.56 0.51 2.98 16 16 C 0.44 21.98 7.82 87.66 0.69 22.67 16 17 O -0.62 -35.15 15.78 -3.07 -0.05 -35.20 16 18 N -0.57 -30.54 5.29 -306.98 -1.62 -32.16 16 19 C -0.34 -19.50 9.68 84.04 0.81 -18.68 16 20 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 22 N -0.92 -50.63 13.05 21.66 0.28 -50.34 16 23 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 C 0.03 0.55 11.94 67.28 0.80 1.35 16 28 O -0.22 -4.07 10.20 18.92 0.19 -3.88 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.14 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 2.03 6.48 -2.39 -0.02 2.01 16 34 H 0.10 2.90 5.06 -2.39 -0.01 2.89 16 35 H 0.11 2.18 8.04 -2.39 -0.02 2.16 16 36 H 0.10 2.20 7.50 -2.39 -0.02 2.18 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.24 7.62 -2.39 -0.02 1.22 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.34 12.52 4.53 -89.69 -0.41 12.12 16 41 H 0.10 3.60 7.61 -2.38 -0.02 3.58 16 42 H 0.05 1.78 8.05 -2.39 -0.02 1.76 16 43 H 0.39 20.18 7.90 -92.71 -0.73 19.45 16 44 H 0.28 14.29 8.31 -92.70 -0.77 13.52 16 45 H 0.27 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -75.46 382.46 0.52 -74.93 By element: Atomic # 1 Polarization: 43.83 SS G_CDS: -0.09 Total: 43.74 kcal Atomic # 6 Polarization: 31.71 SS G_CDS: 8.94 Total: 40.65 kcal Atomic # 7 Polarization: -133.12 SS G_CDS: -9.76 Total: -142.88 kcal Atomic # 8 Polarization: -61.29 SS G_CDS: -0.60 Total: -61.89 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -75.46 0.52 -74.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283649177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.036 kcal (2) G-P(sol) polarization free energy of solvation -75.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds