Wall clock time and date at job start Sat Apr 11 2020 06:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46659 * 2 1 4 4 N 1.46500 * 109.47201 * 120.00215 * 2 1 3 5 5 C 1.36935 * 119.99954 * 275.00015 * 4 2 1 6 6 H 1.08010 * 120.00152 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00448 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99375 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00607 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47106 * 59.99569 * 9 7 5 11 11 H 1.48495 * 109.47582 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46870 * 300.00046 * 9 7 5 13 13 C 1.52998 * 109.46853 * 240.00224 * 2 1 3 14 14 H 1.08999 * 109.52387 * 299.91505 * 13 2 1 15 15 C 1.53036 * 109.49952 * 59.99938 * 13 2 1 16 16 C 1.53041 * 109.52882 * 181.30685 * 15 13 2 17 17 C 1.53193 * 109.31303 * 298.64361 * 16 15 13 18 18 N 1.46931 * 108.77444 * 54.63150 * 17 16 15 19 19 C 1.34780 * 120.62819 * 126.41434 * 18 17 16 20 20 O 1.21572 * 119.99879 * 174.80606 * 19 18 17 21 21 C 1.47711 * 120.00180 * 354.81128 * 19 18 17 22 22 C 1.41504 * 126.51385 * 173.64718 * 21 19 18 23 23 C 1.35513 * 105.48336 * 179.97438 * 22 21 19 24 24 Cl 1.73599 * 126.39934 * 179.97438 * 23 22 21 25 25 N 1.35065 * 107.19874 * 0.02562 * 23 22 21 26 26 C 1.46497 * 124.88502 * 180.02562 * 25 23 22 27 27 N 1.28472 * 110.23304 * 359.72225 * 25 23 22 28 28 C 1.46917 * 118.73949 * 306.39191 * 18 17 16 29 29 H 1.09002 * 109.46659 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46662 * 299.99734 * 1 2 3 31 31 H 1.08994 * 109.46973 * 59.99966 * 1 2 3 32 32 H 0.96993 * 120.00370 * 94.99866 * 4 2 1 33 33 H 0.96999 * 119.99764 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.45974 * 61.29421 * 15 13 2 35 35 H 1.08996 * 109.46084 * 301.32244 * 15 13 2 36 36 H 1.08999 * 109.49677 * 58.59004 * 16 15 13 37 37 H 1.08993 * 109.50162 * 178.68941 * 16 15 13 38 38 H 1.09002 * 109.58920 * 174.42234 * 17 16 15 39 39 H 1.08995 * 109.58519 * 294.84632 * 17 16 15 40 40 H 1.07996 * 127.25700 * 0.02979 * 22 21 19 41 41 H 1.09004 * 109.46864 * 89.99738 * 26 25 23 42 42 H 1.08998 * 109.47602 * 209.99680 * 26 25 23 43 43 H 1.08994 * 109.47365 * 329.99914 * 26 25 23 44 44 H 1.09006 * 109.58791 * 173.39618 * 28 18 17 45 45 H 1.08999 * 109.59173 * 293.82012 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8919 1.0403 2.4244 7 6 2.6124 -0.6617 3.5090 8 7 2.9254 -1.9388 3.4498 9 14 2.7901 0.2698 5.1183 10 1 1.4674 0.8056 5.5288 11 1 3.2992 -0.6485 6.1683 12 1 3.7445 1.3931 4.9372 13 6 2.0400 -0.7212 -1.2493 14 1 1.6783 -1.7495 -1.2494 15 6 1.5302 -0.0002 -2.4992 16 6 2.0128 -0.7399 -3.7491 17 6 3.5444 -0.7369 -3.7797 18 7 4.0438 -1.2970 -2.5165 19 6 4.9188 -2.3222 -2.5182 20 8 5.3970 -2.7149 -1.4717 21 6 5.2967 -2.9684 -3.7915 22 6 6.2877 -3.9628 -3.9694 23 6 6.2793 -4.2490 -5.2939 24 17 7.2912 -5.4032 -6.1049 25 7 5.3375 -3.4676 -5.8654 26 6 5.0045 -3.4641 -7.2920 27 7 4.7712 -2.7323 -4.9770 28 6 3.5716 -0.7179 -1.2515 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.2491 -1.6317 1.1526 33 1 3.2488 -2.3961 4.2418 34 1 1.9124 1.0204 -2.5110 35 1 0.4405 0.0203 -2.4875 36 1 1.6515 -1.7679 -3.7257 37 1 1.6302 -0.2394 -4.6385 38 1 3.8945 -1.3460 -4.6132 39 1 3.9056 0.2851 -3.8944 40 1 6.9172 -4.4018 -3.2096 41 1 4.2174 -4.1935 -7.4832 42 1 4.6586 -2.4719 -7.5820 43 1 5.8896 -3.7242 -7.8724 44 1 3.9396 -1.3145 -0.4166 45 1 3.9350 0.3056 -1.1599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319815999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:58 Heat of formation + Delta-G solvation = 64.074685 kcal Electronic energy + Delta-G solvation = -27839.547637 eV Core-core repulsion = 23920.699592 eV Total energy + Delta-G solvation = -3918.848045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -43.07369 -39.79998 -37.64152 -37.30316 -35.36645 -33.93713 -32.85181 -31.65351 -30.98621 -29.77356 -28.40568 -27.61520 -25.40366 -24.15560 -23.06346 -22.47911 -21.82111 -20.85164 -19.58540 -19.23712 -17.69052 -17.11678 -16.86680 -16.72198 -15.62374 -15.00908 -14.78238 -14.64184 -14.45801 -14.27170 -13.88285 -13.66091 -13.51287 -13.38948 -13.13933 -12.92884 -12.89278 -12.62870 -12.40075 -12.25593 -12.13934 -11.83494 -11.41103 -11.17980 -10.94339 -10.78524 -10.67912 -10.62680 -10.22072 -10.19657 -10.07672 -9.90251 -9.61115 -9.48451 -9.44789 -9.32301 -8.81146 -8.32541 -6.84592 -5.64153 -2.93338 1.08801 1.21069 1.69613 2.11951 3.18957 3.42443 3.51423 3.55541 3.57041 3.89867 4.47344 4.56360 4.67206 4.77435 4.84894 4.95312 5.06170 5.10487 5.19948 5.29206 5.37277 5.52874 5.66562 5.68896 5.81225 5.89077 5.94870 5.98272 6.02884 6.10785 6.21846 6.29178 6.31598 6.35064 6.51217 6.56548 6.63930 6.80621 6.89240 6.99824 7.18051 7.41118 7.66826 7.79623 8.35460 8.53500 9.64402 10.22613 10.57141 11.58056 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.002736 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.365413 B =10229.671129 C =11628.063194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.068 0.932 7 C -0.012 4.012 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.288 1.288 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.069 0.931 15 C -0.116 4.116 16 C -0.128 4.128 17 C 0.076 3.924 18 N -0.596 5.596 19 C 0.594 3.406 20 O -0.517 6.517 21 C 0.010 3.990 22 C -0.150 4.150 23 C 0.050 3.950 24 Cl 0.001 6.999 25 N -0.280 5.280 26 C 0.080 3.920 27 N -0.242 5.242 28 C 0.123 3.877 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.129 0.871 39 H 0.060 0.940 40 H 0.175 0.825 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.049 -2.747 -28.014 28.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.365 5.365 5 C -0.370 4.370 6 H 0.086 0.914 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.215 1.215 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.088 0.912 15 C -0.154 4.154 16 C -0.166 4.166 17 C -0.048 4.048 18 N -0.328 5.328 19 C 0.379 3.621 20 O -0.390 6.390 21 C -0.149 4.149 22 C -0.179 4.179 23 C -0.100 4.100 24 Cl 0.029 6.971 25 N -0.070 5.070 26 C -0.060 4.060 27 N -0.078 5.078 28 C 0.002 3.998 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.146 0.854 39 H 0.079 0.921 40 H 0.192 0.808 41 H 0.109 0.891 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.126 0.874 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.615 -2.321 -28.031 28.358 hybrid contribution 0.686 -0.410 1.054 1.323 sum 4.301 -2.732 -26.977 27.454 Atomic orbital electron populations 1.22479 0.99364 1.00766 0.99821 1.20173 0.91787 0.95257 0.85797 0.93525 1.42445 1.78079 1.10755 1.05270 1.19144 1.36698 0.93743 0.87378 0.91383 1.24729 1.02247 0.95936 0.97939 1.69658 1.50620 1.08579 1.28868 0.86318 0.77624 0.78624 0.83889 1.21464 1.21794 1.21349 1.21754 0.94625 1.00505 0.95347 0.91218 1.21649 1.00879 0.99053 0.93792 1.21849 0.95245 1.01196 0.98329 1.22609 0.94661 0.99905 0.87635 1.47997 1.43364 1.32964 1.08468 1.16910 0.79593 0.79767 0.85815 1.90884 1.53442 1.63555 1.31128 1.22023 0.99501 1.01203 0.92206 1.21506 1.02363 1.00459 0.93543 1.21911 0.97257 0.98557 0.92287 1.98404 1.64544 1.55107 1.79039 1.45740 1.25174 1.27000 1.09061 1.22291 1.03594 1.05971 0.74194 1.73405 1.20481 1.15667 0.98213 1.21753 0.93870 0.99081 0.85071 0.93644 0.92921 0.94310 0.78174 0.93506 0.91977 0.91369 0.91839 0.91337 0.85419 0.92149 0.80770 0.89126 0.87801 0.88513 0.87429 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.14 37.16 0.34 -2.64 16 2 C 0.18 3.58 2.47 -67.93 -0.17 3.41 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 N -0.72 -18.37 4.52 -53.42 -0.24 -18.61 16 5 C -0.24 -6.70 9.93 -15.06 -0.15 -6.85 16 6 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -29.00 13.06 55.49 0.72 -28.27 16 9 Si 0.90 23.00 29.55 -169.99 -5.02 17.98 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 C -0.10 -1.73 1.97 -90.52 -0.18 -1.91 16 14 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 15 C -0.12 -1.51 4.85 -26.69 -0.13 -1.64 16 16 C -0.13 -1.45 6.08 -26.61 -0.16 -1.62 16 17 C 0.08 0.93 6.33 -3.71 -0.02 0.90 16 18 N -0.60 -9.51 2.97 -173.95 -0.52 -10.03 16 19 C 0.59 10.38 7.70 -12.39 -0.10 10.28 16 20 O -0.52 -11.10 16.37 5.30 0.09 -11.01 16 21 C 0.01 0.14 6.88 -82.76 -0.57 -0.43 16 22 C -0.15 -1.86 10.80 -39.31 -0.42 -2.29 16 23 C 0.05 0.50 7.44 -17.10 -0.13 0.37 16 24 Cl 0.00 0.01 28.67 -51.86 -1.49 -1.48 16 25 N -0.28 -2.54 3.70 -64.88 -0.24 -2.78 16 26 C 0.08 0.33 11.14 59.85 0.67 0.99 16 27 N -0.24 -2.79 8.36 33.42 0.28 -2.51 16 28 C 0.12 2.25 5.46 -3.73 -0.02 2.23 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.58 6.40 -51.93 -0.33 0.24 16 32 H 0.38 10.60 7.62 -40.82 -0.31 10.29 16 33 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.85 6.36 -51.93 -0.33 0.52 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.13 1.47 3.74 -111.27 -0.42 1.06 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 41 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.10 0.24 7.71 -51.93 -0.40 -0.16 16 44 H 0.11 2.42 6.55 -51.93 -0.34 2.08 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -34.15 376.28 -8.63 -42.78 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.75 Total: 7.90 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.14 Total: 0.36 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.01 Total: -62.20 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.49 Total: -1.48 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.15 -8.63 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319815999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.856 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds