Wall clock time and date at job start Sat Apr 11 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46659 * 2 1 4 4 N 1.46500 * 109.47201 * 120.00215 * 2 1 3 5 5 C 1.36935 * 119.99954 * 275.00015 * 4 2 1 6 6 H 1.08010 * 120.00152 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00448 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99375 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00607 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47106 * 59.99569 * 9 7 5 11 11 H 1.48495 * 109.47582 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46870 * 300.00046 * 9 7 5 13 13 C 1.52998 * 109.46853 * 240.00224 * 2 1 3 14 14 H 1.08999 * 109.52387 * 299.91505 * 13 2 1 15 15 C 1.53036 * 109.49952 * 59.99938 * 13 2 1 16 16 C 1.53041 * 109.52882 * 181.30685 * 15 13 2 17 17 C 1.53193 * 109.31303 * 298.64361 * 16 15 13 18 18 N 1.46931 * 108.77444 * 54.63150 * 17 16 15 19 19 C 1.34780 * 120.62819 * 126.41434 * 18 17 16 20 20 O 1.21572 * 119.99879 * 174.80606 * 19 18 17 21 21 C 1.47711 * 120.00180 * 354.81128 * 19 18 17 22 22 C 1.41504 * 126.51385 * 173.64718 * 21 19 18 23 23 C 1.35513 * 105.48336 * 179.97438 * 22 21 19 24 24 Cl 1.73599 * 126.39934 * 179.97438 * 23 22 21 25 25 N 1.35065 * 107.19874 * 0.02562 * 23 22 21 26 26 C 1.46497 * 124.88502 * 180.02562 * 25 23 22 27 27 N 1.28472 * 110.23304 * 359.72225 * 25 23 22 28 28 C 1.46917 * 118.73949 * 306.39191 * 18 17 16 29 29 H 1.09002 * 109.46659 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46662 * 299.99734 * 1 2 3 31 31 H 1.08994 * 109.46973 * 59.99966 * 1 2 3 32 32 H 0.96993 * 120.00370 * 94.99866 * 4 2 1 33 33 H 0.96999 * 119.99764 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.45974 * 61.29421 * 15 13 2 35 35 H 1.08996 * 109.46084 * 301.32244 * 15 13 2 36 36 H 1.08999 * 109.49677 * 58.59004 * 16 15 13 37 37 H 1.08993 * 109.50162 * 178.68941 * 16 15 13 38 38 H 1.09002 * 109.58920 * 174.42234 * 17 16 15 39 39 H 1.08995 * 109.58519 * 294.84632 * 17 16 15 40 40 H 1.07996 * 127.25700 * 0.02979 * 22 21 19 41 41 H 1.09004 * 109.46864 * 89.99738 * 26 25 23 42 42 H 1.08998 * 109.47602 * 209.99680 * 26 25 23 43 43 H 1.08994 * 109.47365 * 329.99914 * 26 25 23 44 44 H 1.09006 * 109.58791 * 173.39618 * 28 18 17 45 45 H 1.08999 * 109.59173 * 293.82012 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8919 1.0403 2.4244 7 6 2.6124 -0.6617 3.5090 8 7 2.9254 -1.9388 3.4498 9 14 2.7901 0.2698 5.1183 10 1 1.4674 0.8056 5.5288 11 1 3.2992 -0.6485 6.1683 12 1 3.7445 1.3931 4.9372 13 6 2.0400 -0.7212 -1.2493 14 1 1.6783 -1.7495 -1.2494 15 6 1.5302 -0.0002 -2.4992 16 6 2.0128 -0.7399 -3.7491 17 6 3.5444 -0.7369 -3.7797 18 7 4.0438 -1.2970 -2.5165 19 6 4.9188 -2.3222 -2.5182 20 8 5.3970 -2.7149 -1.4717 21 6 5.2967 -2.9684 -3.7915 22 6 6.2877 -3.9628 -3.9694 23 6 6.2793 -4.2490 -5.2939 24 17 7.2912 -5.4032 -6.1049 25 7 5.3375 -3.4676 -5.8654 26 6 5.0045 -3.4641 -7.2920 27 7 4.7712 -2.7323 -4.9770 28 6 3.5716 -0.7179 -1.2515 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.2491 -1.6317 1.1526 33 1 3.2488 -2.3961 4.2418 34 1 1.9124 1.0204 -2.5110 35 1 0.4405 0.0203 -2.4875 36 1 1.6515 -1.7679 -3.7257 37 1 1.6302 -0.2394 -4.6385 38 1 3.8945 -1.3460 -4.6132 39 1 3.9056 0.2851 -3.8944 40 1 6.9172 -4.4018 -3.2096 41 1 4.2174 -4.1935 -7.4832 42 1 4.6586 -2.4719 -7.5820 43 1 5.8896 -3.7242 -7.8724 44 1 3.9396 -1.3145 -0.4166 45 1 3.9350 0.3056 -1.1599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319815999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:57 Heat of formation + Delta-G solvation = 41.436633 kcal Electronic energy + Delta-G solvation = -27840.529297 eV Core-core repulsion = 23920.699592 eV Total energy + Delta-G solvation = -3919.829705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.94489 -41.10388 -39.06549 -38.01683 -36.96585 -34.89183 -34.41770 -33.12191 -31.99476 -31.25374 -29.96473 -28.51064 -26.64707 -25.86019 -24.52870 -23.59347 -22.70209 -22.08512 -21.07235 -20.38452 -19.14206 -18.60044 -17.92876 -17.61147 -16.91861 -16.69997 -16.26947 -15.71690 -15.56239 -15.52588 -15.21626 -15.16514 -14.80536 -14.32659 -14.24330 -14.05751 -13.88850 -13.74509 -13.52876 -13.46283 -13.16211 -13.00441 -12.86118 -12.70643 -12.51245 -12.35034 -12.21684 -12.14610 -11.93007 -11.69475 -11.49067 -11.44219 -11.20017 -10.94623 -10.77246 -10.36301 -10.16750 -9.62213 -8.96306 -7.88837 -5.17429 0.25314 0.32533 0.71883 1.40640 1.46043 1.50045 1.55859 2.02378 2.18042 2.58708 3.01742 3.44169 3.60095 3.77614 3.89948 3.99868 4.06274 4.17535 4.21871 4.28233 4.31901 4.34430 4.39152 4.50966 4.62119 4.63570 4.73226 4.79811 4.87728 4.92968 4.94579 5.05368 5.06565 5.10995 5.17793 5.29233 5.37252 5.42013 5.51679 5.57646 5.63553 5.70741 6.31145 6.32153 6.60403 7.05246 7.37078 8.15191 8.37127 9.34664 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.002736 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.365413 B =10229.671129 C =11628.063194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.173 3.827 3 H 0.048 0.952 4 N -0.738 5.738 5 C -0.233 4.233 6 H 0.078 0.922 7 C -0.081 4.081 8 N -0.972 5.972 9 Si 0.971 3.029 10 H -0.276 1.276 11 H -0.300 1.300 12 H -0.278 1.278 13 C -0.089 4.089 14 H 0.050 0.950 15 C -0.109 4.109 16 C -0.120 4.120 17 C 0.071 3.929 18 N -0.593 5.593 19 C 0.587 3.413 20 O -0.576 6.576 21 C -0.020 4.020 22 C -0.172 4.172 23 C 0.060 3.940 24 Cl 0.029 6.971 25 N -0.263 5.263 26 C 0.064 3.936 27 N -0.230 5.230 28 C 0.131 3.869 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.368 0.632 33 H 0.248 0.752 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.109 0.891 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.168 0.832 41 H 0.110 0.890 42 H 0.124 0.876 43 H 0.117 0.883 44 H 0.053 0.947 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 -1.253 -31.993 32.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.065 3.935 3 H 0.066 0.934 4 N -0.377 5.377 5 C -0.365 4.365 6 H 0.096 0.904 7 C -0.273 4.273 8 N -0.623 5.623 9 Si 0.800 3.200 10 H -0.202 1.202 11 H -0.226 1.226 12 H -0.205 1.205 13 C -0.109 4.109 14 H 0.068 0.932 15 C -0.147 4.147 16 C -0.158 4.158 17 C -0.051 4.051 18 N -0.324 5.324 19 C 0.374 3.626 20 O -0.454 6.454 21 C -0.177 4.177 22 C -0.201 4.201 23 C -0.092 4.092 24 Cl 0.057 6.943 25 N -0.053 5.053 26 C -0.074 4.074 27 N -0.069 5.069 28 C 0.008 3.992 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.199 0.801 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.127 0.873 38 H 0.157 0.843 39 H 0.094 0.906 40 H 0.185 0.815 41 H 0.128 0.872 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.072 0.928 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.466 -0.761 -32.095 32.199 hybrid contribution 1.050 -0.896 2.057 2.477 sum 3.516 -1.657 -30.039 30.289 Atomic orbital electron populations 1.22316 0.97313 1.00579 1.01059 1.20470 0.93062 0.94993 0.84994 0.93350 1.42684 1.78403 1.10151 1.06495 1.19577 1.34502 0.94124 0.88250 0.90440 1.25575 1.03311 0.96835 1.01596 1.69852 1.52812 1.10417 1.29258 0.85241 0.77970 0.77235 0.79517 1.20201 1.22632 1.20456 1.21598 0.93346 0.99661 0.96289 0.93195 1.21640 1.01763 0.99261 0.92027 1.21836 0.94077 1.00955 0.98934 1.22930 0.95612 1.00708 0.85867 1.48092 1.42821 1.32511 1.08998 1.17431 0.79043 0.79694 0.86475 1.90838 1.55692 1.65367 1.33545 1.21467 1.01564 1.02895 0.91771 1.21554 1.02664 1.00886 0.94994 1.21835 0.97187 0.98504 0.91652 1.98419 1.63706 1.53969 1.78246 1.46210 1.23618 1.25137 1.10365 1.22855 1.05404 1.08005 0.71120 1.73244 1.20160 1.15905 0.97555 1.21430 0.94915 0.97949 0.84907 0.94543 0.94627 0.90028 0.80119 0.94365 0.90593 0.89732 0.92741 0.87295 0.84281 0.90561 0.81470 0.87168 0.85793 0.86416 0.92828 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 9.14 71.98 0.66 -4.70 16 2 C 0.17 6.90 2.47 44.99 0.11 7.01 16 3 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 4 N -0.74 -38.98 4.52 -322.93 -1.46 -40.44 16 5 C -0.23 -13.40 9.93 84.03 0.83 -12.56 16 6 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 7 C -0.08 -4.92 5.50 84.86 0.47 -4.46 16 8 N -0.97 -63.70 13.06 21.65 0.28 -63.42 16 9 Si 0.97 48.54 29.55 68.60 2.03 50.56 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 C -0.09 -3.02 1.97 -10.73 -0.02 -3.04 16 14 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 15 C -0.11 -2.52 4.85 30.62 0.15 -2.37 16 16 C -0.12 -2.31 6.08 30.67 0.19 -2.13 16 17 C 0.07 1.59 6.33 86.36 0.55 2.14 16 18 N -0.59 -19.49 2.97 -822.51 -2.44 -21.93 16 19 C 0.59 21.86 7.70 86.75 0.67 22.53 16 20 O -0.58 -27.33 16.37 -3.94 -0.06 -27.40 16 21 C -0.02 -0.58 6.88 42.46 0.29 -0.28 16 22 C -0.17 -4.39 10.80 22.44 0.24 -4.15 16 23 C 0.06 1.10 7.44 83.57 0.62 1.72 16 24 Cl 0.03 0.37 28.67 -2.72 -0.08 0.29 16 25 N -0.26 -4.10 3.70 -359.17 -1.33 -5.42 16 26 C 0.06 0.27 11.14 127.77 1.42 1.69 16 27 N -0.23 -4.95 8.36 -48.18 -0.40 -5.35 16 28 C 0.13 5.00 5.46 86.36 0.47 5.47 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 2.15 6.40 -2.39 -0.02 2.14 16 32 H 0.37 21.67 7.62 -92.71 -0.71 20.96 16 33 H 0.25 15.85 8.31 -92.71 -0.77 15.08 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.73 6.36 -2.39 -0.02 1.71 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 37 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.14 2.87 3.74 -79.15 -0.30 2.57 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.17 4.32 8.06 -2.91 -0.02 4.30 16 41 H 0.11 0.15 8.14 -2.38 -0.02 0.13 16 42 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.12 0.07 7.71 -2.39 -0.02 0.05 16 44 H 0.05 2.65 6.55 -2.38 -0.02 2.64 16 45 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -80.75 376.28 3.21 -77.55 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.02 Total: 28.70 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 6.65 Total: 6.86 kcal Atomic # 7 Polarization: -131.21 SS G_CDS: -5.35 Total: -136.56 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.06 Total: -27.40 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.03 Total: 50.56 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -0.08 Total: 0.29 kcal Total: -80.75 3.21 -77.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319815999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.986 kcal (2) G-P(sol) polarization free energy of solvation -80.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds