Wall clock time and date at job start Sat Apr 11 2020 06:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47062 * 2 1 4 4 N 1.46499 * 109.47144 * 240.00114 * 2 1 3 5 5 C 1.36941 * 120.00114 * 85.00105 * 4 2 1 6 6 H 1.07999 * 119.99562 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00344 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99886 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00380 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46991 * 59.99657 * 9 7 5 11 11 H 1.48497 * 109.47129 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46888 * 300.00013 * 9 7 5 13 13 C 1.53002 * 109.47033 * 120.00233 * 2 1 3 14 14 H 1.09005 * 109.49750 * 179.97438 * 13 2 1 15 15 C 1.53033 * 109.49825 * 299.99967 * 13 2 1 16 16 C 1.53041 * 109.53863 * 181.31663 * 15 13 2 17 17 C 1.53193 * 109.31387 * 298.63459 * 16 15 13 18 18 N 1.46922 * 108.77289 * 54.63664 * 17 16 15 19 19 C 1.34774 * 120.63416 * 126.37181 * 18 17 16 20 20 O 1.21568 * 120.00316 * 173.92831 * 19 18 17 21 21 C 1.47714 * 119.99712 * 354.20259 * 19 18 17 22 22 C 1.41502 * 126.51088 * 173.03706 * 21 19 18 23 23 C 1.35516 * 105.48264 * 179.97438 * 22 21 19 24 24 Cl 1.73593 * 126.40381 * 179.97438 * 23 22 21 25 25 N 1.35071 * 107.19675 * 0.02562 * 23 22 21 26 26 C 1.46497 * 124.88203 * 180.02562 * 25 23 22 27 27 N 1.28466 * 110.23005 * 359.74720 * 25 23 22 28 28 C 1.46932 * 118.73847 * 306.63962 * 18 17 16 29 29 H 1.09004 * 109.47059 * 60.00069 * 1 2 3 30 30 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47065 * 299.99620 * 1 2 3 32 32 H 0.97001 * 120.00074 * 265.00294 * 4 2 1 33 33 H 0.97001 * 120.00350 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46200 * 61.29667 * 15 13 2 35 35 H 1.08999 * 109.44928 * 301.33110 * 15 13 2 36 36 H 1.09007 * 109.49756 * 178.68057 * 16 15 13 37 37 H 1.08999 * 109.49631 * 58.58948 * 16 15 13 38 38 H 1.09000 * 109.58535 * 294.84837 * 17 16 15 39 39 H 1.09001 * 109.58754 * 174.42185 * 17 16 15 40 40 H 1.07996 * 127.25867 * 359.97438 * 22 21 19 41 41 H 1.09000 * 109.47399 * 90.00041 * 26 25 23 42 42 H 1.09010 * 109.46780 * 209.99738 * 26 25 23 43 43 H 1.08993 * 109.47550 * 329.99389 * 26 25 23 44 44 H 1.08994 * 109.58471 * 173.14764 * 28 18 17 45 45 H 1.08999 * 109.58945 * 293.57468 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0074 -2.3758 6 1 1.8919 1.0404 -2.4243 7 6 2.6114 -0.6618 -3.5093 8 7 2.9234 -1.9391 -3.4505 9 14 2.7891 0.2699 -5.1186 10 1 3.7444 1.3923 -4.9377 11 1 3.2970 -0.6488 -6.1689 12 1 1.4666 0.8067 -5.5284 13 6 2.0400 -0.7213 1.2492 14 1 3.1301 -0.7220 1.2495 15 6 1.5302 -0.0004 2.4992 16 6 2.0667 -0.7018 3.7491 17 6 1.5534 -2.1448 3.7801 18 7 1.9150 -2.8025 2.5171 19 6 2.5906 -3.9687 2.5189 20 8 2.7877 -4.5587 1.4744 21 6 3.0864 -4.5330 3.7908 22 6 3.6852 -5.8022 3.9721 23 6 3.9751 -5.8800 5.2936 24 17 4.7256 -7.2175 6.1067 25 7 3.5699 -4.7227 5.8601 26 6 3.6997 -4.3956 7.2822 27 7 3.0596 -3.9479 4.9715 28 6 1.5313 -2.1617 1.2517 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 3.2461 -2.3966 -4.2427 34 1 0.4405 -0.0206 2.5110 35 1 1.8742 1.0338 2.4873 36 1 1.7224 -0.1740 4.6386 37 1 3.1565 -0.7037 3.7258 38 1 0.4694 -2.1447 3.8948 39 1 2.0110 -2.6777 4.6136 40 1 3.8718 -6.5510 3.2166 41 1 4.6565 -3.9030 7.4559 42 1 2.8891 -3.7290 7.5771 43 1 3.6500 -5.3110 7.8716 44 1 1.9743 -2.7058 0.4176 45 1 0.4455 -2.1630 1.1560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319816000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:02 Heat of formation + Delta-G solvation = 66.518574 kcal Electronic energy + Delta-G solvation = -27889.698920 eV Core-core repulsion = 23970.956850 eV Total energy + Delta-G solvation = -3918.742070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.08421 -39.88692 -37.73761 -37.31005 -35.37488 -33.94129 -32.85858 -31.76244 -30.96352 -29.70732 -28.24594 -27.51865 -25.50368 -24.40342 -23.11020 -22.76115 -21.83191 -20.98629 -19.71492 -18.53922 -17.78213 -17.16834 -16.89551 -16.72099 -15.67323 -14.97362 -14.70086 -14.66717 -14.54350 -14.43092 -13.87692 -13.67760 -13.61441 -13.40799 -13.18889 -12.94740 -12.90409 -12.65591 -12.44418 -12.34029 -12.07692 -11.76824 -11.45790 -11.43483 -10.92131 -10.78916 -10.56376 -10.39418 -10.34994 -10.16611 -10.12412 -9.94524 -9.65111 -9.49248 -9.43318 -9.32671 -8.81350 -8.32711 -6.85803 -5.64591 -2.94272 1.08218 1.20006 1.68311 2.11106 3.15630 3.39875 3.50595 3.54596 3.56287 3.88949 4.45834 4.55989 4.66545 4.76484 4.84548 4.94054 5.05328 5.09394 5.19046 5.28767 5.35321 5.51655 5.65267 5.68329 5.77255 5.86198 5.95632 5.96352 6.00127 6.06680 6.18003 6.22250 6.28719 6.36690 6.45740 6.51918 6.68260 6.75593 6.88707 6.97361 7.20791 7.39512 7.63318 7.78929 8.32175 8.53129 9.63706 10.22280 10.56391 11.57465 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.002669 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.892768 B =10487.185852 C =11738.164372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.181 3.819 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.240 4.240 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.103 4.103 14 H 0.072 0.928 15 C -0.115 4.115 16 C -0.128 4.128 17 C 0.077 3.923 18 N -0.595 5.595 19 C 0.595 3.405 20 O -0.517 6.517 21 C 0.009 3.991 22 C -0.150 4.150 23 C 0.050 3.950 24 Cl 0.001 6.999 25 N -0.280 5.280 26 C 0.079 3.921 27 N -0.241 5.241 28 C 0.117 3.883 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.385 0.615 33 H 0.255 0.745 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.129 0.871 40 H 0.175 0.825 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 -5.738 28.074 28.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.067 0.933 4 N -0.368 5.368 5 C -0.371 4.371 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.123 4.123 14 H 0.091 0.909 15 C -0.153 4.153 16 C -0.167 4.167 17 C -0.047 4.047 18 N -0.327 5.327 19 C 0.380 3.620 20 O -0.391 6.391 21 C -0.150 4.150 22 C -0.179 4.179 23 C -0.100 4.100 24 Cl 0.029 6.971 25 N -0.069 5.069 26 C -0.061 4.061 27 N -0.077 5.077 28 C -0.004 4.004 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.145 0.855 40 H 0.192 0.808 41 H 0.109 0.891 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.314 -5.089 28.087 28.546 hybrid contribution 0.505 -0.552 -1.059 1.297 sum 0.192 -5.641 27.028 27.611 Atomic orbital electron populations 1.22575 0.99551 1.00890 0.99918 1.20167 0.91809 0.95253 0.85747 0.93341 1.42517 1.78139 1.10833 1.05287 1.19168 1.36727 0.93786 0.87410 0.91345 1.24745 1.02276 0.95947 0.97965 1.69665 1.50654 1.08524 1.28889 0.86308 0.77664 0.78575 0.83852 1.21402 1.21765 1.21393 1.21698 1.00975 0.94259 0.95396 0.90917 1.21643 1.00830 0.99108 0.93764 1.21853 1.01234 0.95240 0.98346 1.22590 1.00189 0.94360 0.87522 1.47967 1.55037 1.21351 1.08371 1.16911 0.78312 0.80970 0.85819 1.90878 1.57507 1.59414 1.31265 1.21998 1.05917 0.94776 0.92300 1.21507 1.03932 0.98836 0.93577 1.21914 1.07891 0.87808 0.92411 1.98405 1.79614 1.40138 1.78913 1.45734 1.42085 1.09835 1.09291 1.22295 1.05290 1.04108 0.74361 1.73409 1.17168 1.18907 0.98240 1.21784 1.00117 0.93284 0.85213 0.92927 0.93273 0.94254 0.78008 0.93461 0.91504 0.91807 0.91303 0.91805 0.92100 0.85467 0.80760 0.89112 0.87791 0.88503 0.88044 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 8.79 37.16 0.33 -2.72 16 2 C 0.18 3.62 2.72 -67.93 -0.18 3.43 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 N -0.73 -18.62 5.04 -53.43 -0.27 -18.89 16 5 C -0.24 -6.80 9.93 -15.06 -0.15 -6.95 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -29.15 13.06 55.49 0.72 -28.42 16 9 Si 0.90 23.00 29.55 -169.99 -5.02 17.98 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 C -0.10 -1.76 2.32 -90.72 -0.21 -1.97 16 14 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 15 C -0.12 -1.51 4.78 -26.69 -0.13 -1.64 16 16 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 17 C 0.08 0.93 6.33 -3.71 -0.02 0.91 16 18 N -0.59 -9.35 2.98 -174.19 -0.52 -9.87 16 19 C 0.60 10.26 7.69 -12.39 -0.10 10.16 16 20 O -0.52 -10.92 16.38 5.31 0.09 -10.84 16 21 C 0.01 0.13 6.87 -82.77 -0.57 -0.44 16 22 C -0.15 -1.84 10.80 -39.31 -0.42 -2.27 16 23 C 0.05 0.49 7.44 -17.10 -0.13 0.36 16 24 Cl 0.00 0.01 28.67 -51.86 -1.49 -1.48 16 25 N -0.28 -2.52 3.70 -64.87 -0.24 -2.76 16 26 C 0.08 0.32 11.14 59.85 0.67 0.99 16 27 N -0.24 -2.76 8.38 33.42 0.28 -2.48 16 28 C 0.12 2.08 5.19 -3.93 -0.02 2.06 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.89 6.32 -51.93 -0.33 0.56 16 31 H 0.04 0.58 6.46 -51.93 -0.34 0.24 16 32 H 0.38 10.65 6.17 -40.82 -0.25 10.40 16 33 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 34 H 0.07 0.83 6.50 -51.93 -0.34 0.49 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.13 1.45 3.76 -107.98 -0.41 1.04 16 40 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 41 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.10 0.28 8.14 -51.92 -0.42 -0.14 16 43 H 0.10 0.23 7.71 -51.93 -0.40 -0.17 16 44 H 0.10 2.20 5.63 -51.93 -0.29 1.91 16 45 H 0.07 1.22 6.16 -51.93 -0.32 0.90 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -34.52 370.77 -8.50 -43.02 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.44 Total: 8.31 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.20 Total: -0.17 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.02 Total: -62.42 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.49 Total: -1.48 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.52 -8.50 -43.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319816000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.541 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds