Wall clock time and date at job start Sat Apr 11 2020 06:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47062 * 2 1 4 4 N 1.46499 * 109.47144 * 240.00114 * 2 1 3 5 5 C 1.36941 * 120.00114 * 85.00105 * 4 2 1 6 6 H 1.07999 * 119.99562 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00344 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99886 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00380 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46991 * 59.99657 * 9 7 5 11 11 H 1.48497 * 109.47129 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46888 * 300.00013 * 9 7 5 13 13 C 1.53002 * 109.47033 * 120.00233 * 2 1 3 14 14 H 1.09005 * 109.49750 * 179.97438 * 13 2 1 15 15 C 1.53033 * 109.49825 * 299.99967 * 13 2 1 16 16 C 1.53041 * 109.53863 * 181.31663 * 15 13 2 17 17 C 1.53193 * 109.31387 * 298.63459 * 16 15 13 18 18 N 1.46922 * 108.77289 * 54.63664 * 17 16 15 19 19 C 1.34774 * 120.63416 * 126.37181 * 18 17 16 20 20 O 1.21568 * 120.00316 * 173.92831 * 19 18 17 21 21 C 1.47714 * 119.99712 * 354.20259 * 19 18 17 22 22 C 1.41502 * 126.51088 * 173.03706 * 21 19 18 23 23 C 1.35516 * 105.48264 * 179.97438 * 22 21 19 24 24 Cl 1.73593 * 126.40381 * 179.97438 * 23 22 21 25 25 N 1.35071 * 107.19675 * 0.02562 * 23 22 21 26 26 C 1.46497 * 124.88203 * 180.02562 * 25 23 22 27 27 N 1.28466 * 110.23005 * 359.74720 * 25 23 22 28 28 C 1.46932 * 118.73847 * 306.63962 * 18 17 16 29 29 H 1.09004 * 109.47059 * 60.00069 * 1 2 3 30 30 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47065 * 299.99620 * 1 2 3 32 32 H 0.97001 * 120.00074 * 265.00294 * 4 2 1 33 33 H 0.97001 * 120.00350 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46200 * 61.29667 * 15 13 2 35 35 H 1.08999 * 109.44928 * 301.33110 * 15 13 2 36 36 H 1.09007 * 109.49756 * 178.68057 * 16 15 13 37 37 H 1.08999 * 109.49631 * 58.58948 * 16 15 13 38 38 H 1.09000 * 109.58535 * 294.84837 * 17 16 15 39 39 H 1.09001 * 109.58754 * 174.42185 * 17 16 15 40 40 H 1.07996 * 127.25867 * 359.97438 * 22 21 19 41 41 H 1.09000 * 109.47399 * 90.00041 * 26 25 23 42 42 H 1.09010 * 109.46780 * 209.99738 * 26 25 23 43 43 H 1.08993 * 109.47550 * 329.99389 * 26 25 23 44 44 H 1.08994 * 109.58471 * 173.14764 * 28 18 17 45 45 H 1.08999 * 109.58945 * 293.57468 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0074 -2.3758 6 1 1.8919 1.0404 -2.4243 7 6 2.6114 -0.6618 -3.5093 8 7 2.9234 -1.9391 -3.4505 9 14 2.7891 0.2699 -5.1186 10 1 3.7444 1.3923 -4.9377 11 1 3.2970 -0.6488 -6.1689 12 1 1.4666 0.8067 -5.5284 13 6 2.0400 -0.7213 1.2492 14 1 3.1301 -0.7220 1.2495 15 6 1.5302 -0.0004 2.4992 16 6 2.0667 -0.7018 3.7491 17 6 1.5534 -2.1448 3.7801 18 7 1.9150 -2.8025 2.5171 19 6 2.5906 -3.9687 2.5189 20 8 2.7877 -4.5587 1.4744 21 6 3.0864 -4.5330 3.7908 22 6 3.6852 -5.8022 3.9721 23 6 3.9751 -5.8800 5.2936 24 17 4.7256 -7.2175 6.1067 25 7 3.5699 -4.7227 5.8601 26 6 3.6997 -4.3956 7.2822 27 7 3.0596 -3.9479 4.9715 28 6 1.5313 -2.1617 1.2517 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 3.2461 -2.3966 -4.2427 34 1 0.4405 -0.0206 2.5110 35 1 1.8742 1.0338 2.4873 36 1 1.7224 -0.1740 4.6386 37 1 3.1565 -0.7037 3.7258 38 1 0.4694 -2.1447 3.8948 39 1 2.0110 -2.6777 4.6136 40 1 3.8718 -6.5510 3.2166 41 1 4.6565 -3.9030 7.4559 42 1 2.8891 -3.7290 7.5771 43 1 3.6500 -5.3110 7.8716 44 1 1.9743 -2.7058 0.4176 45 1 0.4455 -2.1630 1.1560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319816000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:01 Heat of formation + Delta-G solvation = 43.357477 kcal Electronic energy + Delta-G solvation = -27890.703261 eV Core-core repulsion = 23970.956850 eV Total energy + Delta-G solvation = -3919.746411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.94466 -41.17652 -39.15607 -38.01608 -36.95063 -34.90847 -34.41083 -33.19007 -31.95620 -31.28907 -29.62100 -28.53948 -26.63190 -26.17293 -24.67570 -23.81293 -22.70872 -22.20586 -20.91251 -19.90496 -19.27186 -18.60382 -17.92792 -17.60567 -17.00964 -16.69424 -16.12159 -15.84135 -15.66564 -15.51135 -15.31562 -15.15411 -14.86276 -14.41825 -14.25609 -14.05717 -13.88871 -13.80927 -13.52225 -13.30720 -13.16125 -13.05303 -12.83823 -12.77617 -12.63591 -12.33875 -12.23293 -11.99660 -11.78065 -11.76952 -11.55407 -11.44377 -11.17940 -10.92297 -10.81263 -10.36226 -10.16309 -9.60225 -8.98811 -7.89873 -5.19591 0.25252 0.32762 0.71944 1.40559 1.45635 1.49823 1.55952 2.01547 2.17599 2.57869 3.01811 3.42293 3.59577 3.78685 3.91735 3.97353 4.05282 4.13585 4.20375 4.28313 4.31377 4.34082 4.39644 4.46392 4.63450 4.64649 4.68067 4.73656 4.86139 4.89681 4.93671 5.05382 5.12412 5.14787 5.16449 5.25546 5.36872 5.40499 5.47945 5.55762 5.66565 5.72187 6.30148 6.31046 6.60002 7.04321 7.35791 8.14560 8.35925 9.33440 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.002669 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.892768 B =10487.185852 C =11738.164372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.048 0.952 4 N -0.742 5.742 5 C -0.237 4.237 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.973 5.973 9 Si 0.974 3.026 10 H -0.277 1.277 11 H -0.299 1.299 12 H -0.276 1.276 13 C -0.091 4.091 14 H 0.044 0.956 15 C -0.109 4.109 16 C -0.121 4.121 17 C 0.072 3.928 18 N -0.593 5.593 19 C 0.587 3.413 20 O -0.575 6.575 21 C -0.021 4.021 22 C -0.172 4.172 23 C 0.059 3.941 24 Cl 0.028 6.972 25 N -0.263 5.263 26 C 0.064 3.936 27 N -0.230 5.230 28 C 0.125 3.875 29 H 0.034 0.966 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.370 0.630 33 H 0.249 0.751 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.140 0.860 40 H 0.168 0.832 41 H 0.109 0.891 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.050 0.950 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.982 -3.997 31.934 32.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.065 3.935 3 H 0.066 0.934 4 N -0.383 5.383 5 C -0.369 4.369 6 H 0.096 0.904 7 C -0.274 4.274 8 N -0.624 5.624 9 Si 0.803 3.197 10 H -0.203 1.203 11 H -0.226 1.226 12 H -0.202 1.202 13 C -0.111 4.111 14 H 0.063 0.937 15 C -0.147 4.147 16 C -0.159 4.159 17 C -0.050 4.050 18 N -0.324 5.324 19 C 0.374 3.626 20 O -0.453 6.453 21 C -0.178 4.178 22 C -0.201 4.201 23 C -0.092 4.092 24 Cl 0.056 6.944 25 N -0.053 5.053 26 C -0.074 4.074 27 N -0.069 5.069 28 C 0.003 3.997 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.202 0.798 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.156 0.844 40 H 0.186 0.814 41 H 0.128 0.872 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.069 0.931 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.127 -3.273 32.033 32.219 hybrid contribution 0.774 -1.111 -2.031 2.441 sum -0.353 -4.384 30.002 30.322 Atomic orbital electron populations 1.22401 0.97291 1.00861 1.01133 1.20461 0.93252 0.94878 0.84946 0.93365 1.42803 1.78524 1.10378 1.06560 1.19623 1.34696 0.94210 0.88347 0.90376 1.25621 1.03236 0.96846 1.01709 1.69869 1.52792 1.10418 1.29347 0.85198 0.78011 0.77190 0.79288 1.20316 1.22551 1.20212 1.21527 0.99186 0.93992 0.96387 0.93743 1.21634 1.01762 0.99286 0.91968 1.21839 1.00490 0.94602 0.98946 1.22909 1.01511 0.94750 0.85798 1.48072 1.54358 1.21019 1.08950 1.17425 0.77789 0.80954 0.86453 1.90833 1.59775 1.61120 1.33612 1.21470 1.08484 0.95889 0.91912 1.21560 1.04944 0.98555 0.95011 1.21843 1.06964 0.88623 0.91794 1.98419 1.79012 1.38795 1.78130 1.46203 1.39684 1.08898 1.10559 1.22853 1.07179 1.05985 0.71360 1.73257 1.17089 1.18911 0.97614 1.21485 0.99968 0.93249 0.84997 0.94687 0.93924 0.89949 0.79776 0.94276 0.89781 0.90455 0.87245 0.93021 0.90208 0.84392 0.81423 0.87246 0.85769 0.86394 0.93137 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.48 8.79 71.98 0.63 -4.85 16 2 C 0.17 6.96 2.72 44.99 0.12 7.09 16 3 H 0.05 1.94 8.08 -2.39 -0.02 1.93 16 4 N -0.74 -39.69 5.04 -322.94 -1.63 -41.31 16 5 C -0.24 -13.75 9.93 84.03 0.83 -12.92 16 6 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 7 C -0.08 -5.00 5.50 84.86 0.47 -4.53 16 8 N -0.97 -64.04 13.06 21.65 0.28 -63.76 16 9 Si 0.97 48.45 29.55 68.60 2.03 50.48 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 13 C -0.09 -3.12 2.32 -10.86 -0.03 -3.15 16 14 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 15 C -0.11 -2.53 4.78 30.62 0.15 -2.38 16 16 C -0.12 -2.34 6.08 30.67 0.19 -2.16 16 17 C 0.07 1.59 6.33 86.36 0.55 2.13 16 18 N -0.59 -19.10 2.98 -823.29 -2.45 -21.56 16 19 C 0.59 21.57 7.69 86.75 0.67 22.24 16 20 O -0.58 -26.83 16.38 -3.93 -0.06 -26.89 16 21 C -0.02 -0.59 6.87 42.46 0.29 -0.30 16 22 C -0.17 -4.35 10.80 22.44 0.24 -4.11 16 23 C 0.06 1.08 7.44 83.56 0.62 1.70 16 24 Cl 0.03 0.36 28.67 -2.72 -0.08 0.29 16 25 N -0.26 -4.08 3.70 -359.16 -1.33 -5.41 16 26 C 0.06 0.27 11.14 127.77 1.42 1.69 16 27 N -0.23 -4.92 8.38 -48.18 -0.40 -5.33 16 28 C 0.13 4.66 5.19 86.22 0.45 5.11 16 29 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.04 1.53 6.32 -2.39 -0.02 1.51 16 31 H 0.08 2.15 6.46 -2.39 -0.02 2.14 16 32 H 0.37 21.93 6.17 -92.71 -0.57 21.36 16 33 H 0.25 15.93 8.31 -92.71 -0.77 15.16 16 34 H 0.08 1.71 6.50 -2.39 -0.02 1.70 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.14 2.80 3.76 -74.89 -0.28 2.52 16 40 H 0.17 4.28 8.06 -2.91 -0.02 4.26 16 41 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.12 0.10 8.14 -2.38 -0.02 0.08 16 43 H 0.12 0.06 7.71 -2.39 -0.02 0.04 16 44 H 0.05 2.41 5.63 -2.39 -0.01 2.40 16 45 H 0.08 2.78 6.16 -2.39 -0.01 2.76 16 Total: -1.00 -81.41 370.77 3.14 -78.26 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.18 Total: 29.66 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 6.60 Total: 5.57 kcal Atomic # 7 Polarization: -131.84 SS G_CDS: -5.53 Total: -137.37 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.06 Total: -26.89 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -0.08 Total: 0.29 kcal Total: -81.41 3.14 -78.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319816000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.622 kcal (2) G-P(sol) polarization free energy of solvation -81.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds