Wall clock time and date at job start Sat Apr 11 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47041 * 2 1 4 4 N 1.46497 * 109.47183 * 120.00499 * 2 1 3 5 5 C 1.36932 * 119.99874 * 275.00026 * 4 2 1 6 6 H 1.08003 * 120.00493 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99772 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00053 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00012 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47070 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47444 * 119.99679 * 9 7 5 12 12 H 1.48501 * 109.47228 * 239.99851 * 9 7 5 13 13 C 1.53006 * 109.47174 * 240.00719 * 2 1 3 14 14 H 1.09000 * 109.52352 * 185.08206 * 13 2 1 15 15 C 1.53041 * 109.49817 * 64.99876 * 13 2 1 16 16 C 1.53038 * 109.52506 * 178.69156 * 15 13 2 17 17 C 1.53165 * 109.32514 * 61.37408 * 16 15 13 18 18 N 1.46919 * 108.77036 * 305.35199 * 17 16 15 19 19 C 1.34780 * 120.63402 * 233.59487 * 18 17 16 20 20 O 1.21610 * 120.00228 * 174.51587 * 19 18 17 21 21 C 1.47386 * 119.99854 * 354.50748 * 19 18 17 22 22 C 1.38069 * 126.42152 * 319.93182 * 21 19 18 23 23 N 1.34236 * 107.43473 * 179.83309 * 22 21 19 24 24 C 1.46503 * 125.73972 * 180.12034 * 23 22 21 25 25 N 1.39938 * 108.52274 * 0.42772 * 23 22 21 26 26 C 1.30526 * 108.89296 * 359.72976 * 25 23 22 27 27 Cl 1.73599 * 126.00504 * 179.97438 * 26 25 23 28 28 C 1.46929 * 118.73899 * 53.61070 * 18 17 16 29 29 H 1.08997 * 109.46961 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47111 * 299.99665 * 1 2 3 31 31 H 1.09000 * 109.46757 * 59.99352 * 1 2 3 32 32 H 0.97002 * 120.00049 * 94.99963 * 4 2 1 33 33 H 0.97003 * 119.99914 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.45877 * 298.70712 * 15 13 2 35 35 H 1.08998 * 109.45915 * 58.67538 * 15 13 2 36 36 H 1.09006 * 109.49664 * 181.30810 * 16 15 13 37 37 H 1.08997 * 109.50022 * 301.40526 * 16 15 13 38 38 H 1.09005 * 109.58940 * 185.56864 * 17 16 15 39 39 H 1.09001 * 109.59269 * 65.13983 * 17 16 15 40 40 H 1.07997 * 126.28214 * 359.96280 * 22 21 19 41 41 H 1.08993 * 109.47270 * 270.33285 * 24 23 22 42 42 H 1.09001 * 109.46907 * 30.33615 * 24 23 22 43 43 H 1.08996 * 109.46861 * 150.33065 * 24 23 22 44 44 H 1.08997 * 109.58758 * 186.60249 * 28 18 17 45 45 H 1.09002 * 109.58426 * 66.17976 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1491 -0.0077 2.3757 6 1 1.8919 1.0401 2.4244 7 6 2.6124 -0.6620 3.5089 8 7 2.9254 -1.9391 3.4496 9 14 2.7901 0.2695 5.1183 10 1 2.3752 1.6817 4.9212 11 1 1.9299 -0.3599 6.1522 12 1 4.2071 0.2275 5.5607 13 6 2.0401 -0.7211 -1.2494 14 1 3.1263 -0.8011 -1.2059 15 6 1.6355 0.0689 -2.4961 16 6 2.1733 -0.6346 -3.7443 17 6 1.5612 -2.0353 -3.8401 18 7 1.8219 -2.7520 -2.5844 19 6 2.4123 -3.9636 -2.5950 20 8 2.7133 -4.5026 -1.5472 21 6 2.6931 -4.6353 -3.8764 22 6 1.8703 -4.6634 -4.9848 23 7 2.4985 -5.3746 -5.9342 24 6 1.9825 -5.6535 -7.2767 25 7 3.7262 -5.8109 -5.4235 26 6 3.8529 -5.3767 -4.1991 27 17 5.2073 -5.6604 -3.1508 28 6 1.4264 -2.1232 -1.3167 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.2491 -1.6319 1.1524 33 1 3.2488 -2.3964 4.2416 34 1 0.5485 0.1273 -2.5521 35 1 2.0507 1.0751 -2.4390 36 1 1.9048 -0.0592 -4.6303 37 1 3.2582 -0.7153 -3.6774 38 1 2.0147 -2.5763 -4.6706 39 1 0.4857 -1.9542 -3.9980 40 1 0.9002 -4.1969 -5.0726 41 1 1.4054 -6.5779 -7.2594 42 1 1.3427 -4.8316 -7.5979 43 1 2.8157 -5.7583 -7.9716 44 1 1.7910 -2.7222 -0.4823 45 1 0.3399 -2.0492 -1.2689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319829111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:09 Heat of formation + Delta-G solvation = 56.499271 kcal Electronic energy + Delta-G solvation = -28007.568706 eV Core-core repulsion = 24088.392166 eV Total energy + Delta-G solvation = -3919.176540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.80988 -39.78239 -37.64259 -36.83645 -35.38370 -33.59140 -32.94780 -31.83050 -31.03273 -29.56811 -27.83500 -27.41615 -25.46034 -24.42360 -23.15487 -22.53442 -21.52395 -21.01704 -19.69374 -18.63660 -17.47882 -17.05439 -16.69069 -16.11970 -15.72357 -15.26603 -14.90467 -14.71615 -14.57116 -14.08163 -13.99235 -13.71174 -13.59657 -13.45149 -13.20648 -12.86317 -12.76274 -12.63562 -12.41175 -11.95691 -11.83185 -11.74323 -11.49841 -11.10900 -10.95996 -10.87136 -10.81213 -10.56798 -10.38596 -10.17329 -10.16358 -9.83993 -9.71376 -9.59845 -9.46518 -8.95369 -8.82800 -8.34286 -6.86005 -5.65089 -2.94704 1.16377 1.21613 1.81149 2.40699 3.01790 3.32595 3.49630 3.54406 3.57345 4.06685 4.24523 4.60437 4.63097 4.67175 4.78336 4.87136 4.92579 4.99581 5.00345 5.09714 5.27494 5.35953 5.46199 5.61501 5.66229 5.71627 5.81084 5.88572 5.92530 6.01769 6.13734 6.18695 6.29308 6.30734 6.43310 6.47307 6.64502 6.71627 6.83839 6.96793 6.98560 7.18693 7.59096 7.79318 8.41475 8.52391 9.63335 10.22109 10.56126 11.56942 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015001 B = 0.003098 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.120292 B = 9036.057484 C =10385.564838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.181 3.819 3 H 0.048 0.952 4 N -0.725 5.725 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.928 5.928 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.104 4.104 14 H 0.075 0.925 15 C -0.113 4.113 16 C -0.134 4.134 17 C 0.103 3.897 18 N -0.606 5.606 19 C 0.586 3.414 20 O -0.513 6.513 21 C -0.262 4.262 22 C 0.102 3.898 23 N -0.352 5.352 24 C 0.097 3.903 25 N -0.284 5.284 26 C 0.167 3.833 27 Cl 0.032 6.968 28 C 0.118 3.882 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.385 0.615 33 H 0.254 0.746 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.193 0.807 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.083 -3.707 -27.122 27.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.367 5.367 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.576 5.576 9 Si 0.735 3.265 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.124 4.124 14 H 0.093 0.907 15 C -0.151 4.151 16 C -0.172 4.172 17 C -0.021 4.021 18 N -0.340 5.340 19 C 0.372 3.628 20 O -0.388 6.388 21 C -0.277 4.277 22 C -0.048 4.048 23 N -0.133 5.133 24 C -0.043 4.043 25 N -0.109 5.109 26 C -0.025 4.025 27 Cl 0.060 6.940 28 C -0.003 4.003 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.220 0.780 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.210 0.790 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.285 -4.615 -27.380 28.095 hybrid contribution -0.139 0.613 1.517 1.642 sum -4.423 -4.002 -25.863 26.542 Atomic orbital electron populations 1.22577 0.99622 1.00847 0.99870 1.20166 0.91751 0.95250 0.85824 0.93410 1.42509 1.78078 1.10862 1.05282 1.19245 1.36544 0.93810 0.87374 0.91268 1.24751 1.02297 0.95951 0.97981 1.69688 1.50681 1.08543 1.28665 0.86174 0.77260 0.78724 0.84355 1.20675 1.21979 1.21981 1.21789 1.01145 0.94309 0.95192 0.90689 1.21600 1.00942 0.98936 0.93638 1.21907 1.01251 0.95286 0.98759 1.21883 1.00102 0.93401 0.86679 1.47997 1.60528 1.17539 1.07948 1.17174 0.77621 0.80821 0.87179 1.90883 1.50629 1.64817 1.32439 1.20208 0.97362 1.12590 0.97585 1.23138 0.98954 0.95253 0.87455 1.48175 1.13117 1.39500 1.12521 1.22075 1.00613 1.03210 0.78426 1.77227 1.00458 1.23147 1.10100 1.22679 0.91670 0.96978 0.91219 1.98450 1.39907 1.94853 1.60800 1.21863 0.99115 0.93920 0.85410 0.93214 0.92937 0.94387 0.77996 0.93572 0.91554 0.91686 0.91157 0.91516 0.90172 0.91522 0.79049 0.89917 0.88601 0.88549 0.88029 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 8.77 37.16 0.33 -2.60 16 2 C 0.18 3.52 2.67 -67.93 -0.18 3.33 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 N -0.73 -18.40 5.06 -53.42 -0.27 -18.67 16 5 C -0.24 -6.72 9.93 -15.06 -0.15 -6.87 16 6 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -29.07 13.06 55.49 0.72 -28.34 16 9 Si 0.90 22.95 29.55 -169.99 -5.02 17.92 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 13 C -0.10 -1.70 2.27 -90.50 -0.21 -1.90 16 14 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 15 C -0.11 -1.36 4.89 -26.69 -0.13 -1.49 16 16 C -0.13 -1.32 6.08 -26.63 -0.16 -1.48 16 17 C 0.10 0.97 5.46 -3.73 -0.02 0.95 16 18 N -0.61 -8.50 2.97 -174.07 -0.52 -9.01 16 19 C 0.59 9.52 7.49 -12.54 -0.09 9.43 16 20 O -0.51 -10.78 16.12 5.27 0.08 -10.69 16 21 C -0.26 -3.46 5.23 -105.04 -0.55 -4.01 16 22 C 0.10 0.88 9.10 -16.56 -0.15 0.73 16 23 N -0.35 -2.98 3.98 -67.60 -0.27 -3.25 16 24 C 0.10 0.30 11.44 59.85 0.68 0.99 16 25 N -0.28 -3.52 12.50 33.17 0.41 -3.11 16 26 C 0.17 2.35 7.88 -16.91 -0.13 2.22 16 27 Cl 0.03 0.48 28.82 -51.86 -1.49 -1.02 16 28 C 0.12 1.95 5.19 -3.71 -0.02 1.93 16 29 H 0.05 0.86 6.23 -51.93 -0.32 0.54 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.04 0.53 6.60 -51.93 -0.34 0.19 16 32 H 0.39 10.61 6.48 -40.82 -0.26 10.35 16 33 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 34 H 0.07 0.73 6.63 -51.93 -0.34 0.38 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.64 4.78 -51.93 -0.25 0.39 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.19 0.88 7.30 -52.49 -0.38 0.50 16 41 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 42 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 43 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.10 2.12 5.82 -51.93 -0.30 1.82 16 45 H 0.07 1.09 6.06 -51.93 -0.31 0.77 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -36.63 372.65 -7.91 -44.53 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.29 Total: 5.29 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -0.88 Total: 0.74 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: 0.08 Total: -62.39 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Atomic # 17 Polarization: 0.48 SS G_CDS: -1.49 Total: -1.02 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.63 -7.91 -44.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319829111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.033 kcal (2) G-P(sol) polarization free energy of solvation -36.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds