Wall clock time and date at job start Sat Apr 11 2020 06:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47041 * 2 1 4 4 N 1.46497 * 109.47183 * 120.00499 * 2 1 3 5 5 C 1.36932 * 119.99874 * 275.00026 * 4 2 1 6 6 H 1.08003 * 120.00493 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99772 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00053 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00012 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47070 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47444 * 119.99679 * 9 7 5 12 12 H 1.48501 * 109.47228 * 239.99851 * 9 7 5 13 13 C 1.53006 * 109.47174 * 240.00719 * 2 1 3 14 14 H 1.09000 * 109.52352 * 185.08206 * 13 2 1 15 15 C 1.53041 * 109.49817 * 64.99876 * 13 2 1 16 16 C 1.53038 * 109.52506 * 178.69156 * 15 13 2 17 17 C 1.53165 * 109.32514 * 61.37408 * 16 15 13 18 18 N 1.46919 * 108.77036 * 305.35199 * 17 16 15 19 19 C 1.34780 * 120.63402 * 233.59487 * 18 17 16 20 20 O 1.21610 * 120.00228 * 174.51587 * 19 18 17 21 21 C 1.47386 * 119.99854 * 354.50748 * 19 18 17 22 22 C 1.38069 * 126.42152 * 319.93182 * 21 19 18 23 23 N 1.34236 * 107.43473 * 179.83309 * 22 21 19 24 24 C 1.46503 * 125.73972 * 180.12034 * 23 22 21 25 25 N 1.39938 * 108.52274 * 0.42772 * 23 22 21 26 26 C 1.30526 * 108.89296 * 359.72976 * 25 23 22 27 27 Cl 1.73599 * 126.00504 * 179.97438 * 26 25 23 28 28 C 1.46929 * 118.73899 * 53.61070 * 18 17 16 29 29 H 1.08997 * 109.46961 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47111 * 299.99665 * 1 2 3 31 31 H 1.09000 * 109.46757 * 59.99352 * 1 2 3 32 32 H 0.97002 * 120.00049 * 94.99963 * 4 2 1 33 33 H 0.97003 * 119.99914 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.45877 * 298.70712 * 15 13 2 35 35 H 1.08998 * 109.45915 * 58.67538 * 15 13 2 36 36 H 1.09006 * 109.49664 * 181.30810 * 16 15 13 37 37 H 1.08997 * 109.50022 * 301.40526 * 16 15 13 38 38 H 1.09005 * 109.58940 * 185.56864 * 17 16 15 39 39 H 1.09001 * 109.59269 * 65.13983 * 17 16 15 40 40 H 1.07997 * 126.28214 * 359.96280 * 22 21 19 41 41 H 1.08993 * 109.47270 * 270.33285 * 24 23 22 42 42 H 1.09001 * 109.46907 * 30.33615 * 24 23 22 43 43 H 1.08996 * 109.46861 * 150.33065 * 24 23 22 44 44 H 1.08997 * 109.58758 * 186.60249 * 28 18 17 45 45 H 1.09002 * 109.58426 * 66.17976 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1491 -0.0077 2.3757 6 1 1.8919 1.0401 2.4244 7 6 2.6124 -0.6620 3.5089 8 7 2.9254 -1.9391 3.4496 9 14 2.7901 0.2695 5.1183 10 1 2.3752 1.6817 4.9212 11 1 1.9299 -0.3599 6.1522 12 1 4.2071 0.2275 5.5607 13 6 2.0401 -0.7211 -1.2494 14 1 3.1263 -0.8011 -1.2059 15 6 1.6355 0.0689 -2.4961 16 6 2.1733 -0.6346 -3.7443 17 6 1.5612 -2.0353 -3.8401 18 7 1.8219 -2.7520 -2.5844 19 6 2.4123 -3.9636 -2.5950 20 8 2.7133 -4.5026 -1.5472 21 6 2.6931 -4.6353 -3.8764 22 6 1.8703 -4.6634 -4.9848 23 7 2.4985 -5.3746 -5.9342 24 6 1.9825 -5.6535 -7.2767 25 7 3.7262 -5.8109 -5.4235 26 6 3.8529 -5.3767 -4.1991 27 17 5.2073 -5.6604 -3.1508 28 6 1.4264 -2.1232 -1.3167 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.2491 -1.6319 1.1524 33 1 3.2488 -2.3964 4.2416 34 1 0.5485 0.1273 -2.5521 35 1 2.0507 1.0751 -2.4390 36 1 1.9048 -0.0592 -4.6303 37 1 3.2582 -0.7153 -3.6774 38 1 2.0147 -2.5763 -4.6706 39 1 0.4857 -1.9542 -3.9980 40 1 0.9002 -4.1969 -5.0726 41 1 1.4054 -6.5779 -7.2594 42 1 1.3427 -4.8316 -7.5979 43 1 2.8157 -5.7583 -7.9716 44 1 1.7910 -2.7222 -0.4823 45 1 0.3399 -2.0492 -1.2689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319829111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:08 Heat of formation + Delta-G solvation = 29.710385 kcal Electronic energy + Delta-G solvation = -28008.730359 eV Core-core repulsion = 24088.392166 eV Total energy + Delta-G solvation = -3920.338193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.65230 -40.92332 -38.97193 -37.88902 -36.87822 -34.68302 -34.21318 -33.17421 -32.08380 -31.10809 -29.27915 -28.06917 -26.49285 -26.18090 -24.63105 -23.48613 -22.33824 -22.15490 -20.82741 -19.89998 -19.20632 -18.27469 -17.69165 -16.96449 -16.80005 -16.66597 -16.12757 -15.89502 -15.67840 -15.46722 -15.32843 -15.08386 -14.70020 -14.23465 -14.13635 -14.05520 -13.85656 -13.80584 -13.55887 -13.28553 -12.95702 -12.85695 -12.71950 -12.65354 -12.60753 -12.25651 -12.04613 -11.92367 -11.81801 -11.75209 -11.67031 -11.33815 -11.14223 -10.93921 -10.89624 -10.47082 -9.85718 -9.46605 -8.97624 -7.89972 -5.19182 0.35167 0.42841 0.78220 1.45233 1.47165 1.56955 1.68254 1.93482 2.25346 2.57543 3.36097 3.42713 3.65202 3.80035 3.92413 3.93775 4.02229 4.15823 4.16791 4.28589 4.38324 4.45229 4.46755 4.48354 4.63953 4.68056 4.73975 4.77452 4.78645 4.88847 4.95507 4.97966 5.15125 5.17608 5.20572 5.30475 5.43691 5.50370 5.57434 5.63435 5.73722 5.76525 6.14976 6.31190 6.50517 7.25616 7.35898 8.15996 8.36462 9.33660 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015001 B = 0.003098 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.120292 B = 9036.057484 C =10385.564838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.172 3.828 3 H 0.044 0.956 4 N -0.742 5.742 5 C -0.232 4.232 6 H 0.078 0.922 7 C -0.084 4.084 8 N -0.973 5.973 9 Si 0.972 3.028 10 H -0.262 1.262 11 H -0.295 1.295 12 H -0.298 1.298 13 C -0.093 4.093 14 H 0.036 0.964 15 C -0.106 4.106 16 C -0.130 4.130 17 C 0.095 3.905 18 N -0.601 5.601 19 C 0.580 3.420 20 O -0.581 6.581 21 C -0.298 4.298 22 C 0.140 3.860 23 N -0.336 5.336 24 C 0.083 3.917 25 N -0.305 5.305 26 C 0.145 3.855 27 Cl 0.003 6.997 28 C 0.127 3.873 29 H 0.045 0.955 30 H 0.032 0.968 31 H 0.084 0.916 32 H 0.369 0.631 33 H 0.247 0.753 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.043 0.957 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.245 0.755 41 H 0.098 0.902 42 H 0.139 0.861 43 H 0.099 0.901 44 H 0.044 0.956 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 -1.584 -31.441 32.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.062 0.938 4 N -0.383 5.383 5 C -0.364 4.364 6 H 0.096 0.904 7 C -0.276 4.276 8 N -0.625 5.625 9 Si 0.801 3.199 10 H -0.186 1.186 11 H -0.222 1.222 12 H -0.225 1.225 13 C -0.113 4.113 14 H 0.054 0.946 15 C -0.144 4.144 16 C -0.168 4.168 17 C -0.026 4.026 18 N -0.333 5.333 19 C 0.369 3.631 20 O -0.461 6.461 21 C -0.314 4.314 22 C -0.012 4.012 23 N -0.116 5.116 24 C -0.055 4.055 25 N -0.131 5.131 26 C -0.046 4.046 27 Cl 0.030 6.970 28 C 0.004 3.996 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.201 0.799 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.132 0.868 37 H 0.062 0.938 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.261 0.739 41 H 0.116 0.884 42 H 0.158 0.842 43 H 0.118 0.882 44 H 0.063 0.937 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.485 -2.427 -31.811 32.769 hybrid contribution 0.772 -0.018 2.633 2.744 sum -6.713 -2.444 -29.177 30.039 Atomic orbital electron populations 1.22387 0.97011 1.01007 1.01153 1.20490 0.93437 0.94703 0.85038 0.93783 1.42812 1.78477 1.10358 1.06629 1.19685 1.34239 0.94157 0.88316 0.90367 1.25616 1.03411 0.96849 1.01714 1.69887 1.52963 1.10464 1.29137 0.85082 0.76567 0.78315 0.79888 1.18561 1.22238 1.22536 1.21614 0.98594 0.94828 0.96281 0.94584 1.21591 1.02525 0.98411 0.91876 1.21919 0.99843 0.95840 0.99164 1.22339 1.02853 0.92670 0.84689 1.48063 1.59513 1.17014 1.08740 1.17696 0.76665 0.81181 0.87551 1.90845 1.53496 1.66681 1.35082 1.20016 0.98755 1.14720 0.97903 1.23728 0.99206 0.93060 0.85234 1.48679 1.11461 1.37526 1.13922 1.22663 1.01429 1.05852 0.75557 1.77161 1.02920 1.23679 1.09372 1.22733 0.91640 0.98392 0.91825 1.98425 1.41472 1.95085 1.61972 1.21544 0.99651 0.93051 0.85318 0.93589 0.94924 0.89724 0.79888 0.94379 0.89026 0.91215 0.86819 0.93822 0.88103 0.87340 0.73915 0.88401 0.84243 0.88231 0.93735 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.12 8.77 71.98 0.63 -4.49 16 2 C 0.17 6.71 2.67 45.00 0.12 6.83 16 3 H 0.04 1.75 8.08 -2.39 -0.02 1.73 16 4 N -0.74 -39.41 5.06 -322.93 -1.63 -41.04 16 5 C -0.23 -13.42 9.93 84.04 0.83 -12.58 16 6 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 7 C -0.08 -5.12 5.50 84.86 0.47 -4.65 16 8 N -0.97 -64.32 13.06 21.65 0.28 -64.04 16 9 Si 0.97 48.58 29.55 68.60 2.03 50.61 16 10 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 12 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 13 C -0.09 -3.04 2.27 -10.71 -0.02 -3.07 16 14 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 15 C -0.11 -2.17 4.89 30.62 0.15 -2.02 16 16 C -0.13 -2.00 6.08 30.66 0.19 -1.82 16 17 C 0.10 1.36 5.46 86.35 0.47 1.83 16 18 N -0.60 -16.33 2.97 -822.87 -2.45 -18.78 16 19 C 0.58 19.47 7.49 86.65 0.65 20.12 16 20 O -0.58 -26.70 16.12 -4.06 -0.07 -26.77 16 21 C -0.30 -7.63 5.23 -20.13 -0.11 -7.74 16 22 C 0.14 1.82 9.10 84.29 0.77 2.59 16 23 N -0.34 -4.41 3.98 -367.79 -1.46 -5.87 16 24 C 0.08 0.09 11.44 127.77 1.46 1.56 16 25 N -0.31 -7.24 12.50 -48.96 -0.61 -7.85 16 26 C 0.15 4.18 7.88 85.66 0.67 4.85 16 27 Cl 0.00 0.09 28.82 -2.72 -0.08 0.01 16 28 C 0.13 4.27 5.19 86.36 0.45 4.72 16 29 H 0.05 1.54 6.23 -2.39 -0.01 1.52 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.99 6.60 -2.39 -0.02 1.97 16 32 H 0.37 21.89 6.48 -92.71 -0.60 21.29 16 33 H 0.25 15.90 8.31 -92.71 -0.77 15.13 16 34 H 0.09 1.47 6.63 -2.39 -0.02 1.45 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.04 0.89 8.14 -2.39 -0.02 0.88 16 38 H 0.10 1.06 4.78 -2.38 -0.01 1.05 16 39 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.24 0.46 7.30 -2.91 -0.02 0.44 16 41 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 42 H 0.14 -0.95 8.14 -2.39 -0.02 -0.97 16 43 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.04 2.03 5.82 -2.39 -0.01 2.02 16 45 H 0.09 2.63 6.06 -2.39 -0.01 2.62 16 Total: -1.00 -91.41 372.65 3.17 -88.25 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.43 Total: 19.37 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 6.73 Total: 6.12 kcal Atomic # 7 Polarization: -131.71 SS G_CDS: -5.87 Total: -137.58 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.07 Total: -26.77 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.61 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -0.08 Total: 0.01 kcal Total: -91.41 3.17 -88.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319829111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.957 kcal (2) G-P(sol) polarization free energy of solvation -91.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds