Wall clock time and date at job start Sat Apr 11 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46652 * 2 1 4 4 N 1.46502 * 109.47075 * 120.00046 * 2 1 3 5 5 C 1.36936 * 119.99585 * 275.00264 * 4 2 1 6 6 H 1.07994 * 120.00212 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99604 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00075 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99932 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46704 * 59.99861 * 9 7 5 11 11 H 1.48494 * 109.47077 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.46871 * 300.00023 * 9 7 5 13 13 C 1.52999 * 109.47128 * 240.00129 * 2 1 3 14 14 H 1.09004 * 109.49626 * 299.93460 * 13 2 1 15 15 C 1.53042 * 109.49813 * 59.99700 * 13 2 1 16 16 C 1.53040 * 109.53789 * 181.31676 * 15 13 2 17 17 C 1.53195 * 109.31091 * 298.63782 * 16 15 13 18 18 N 1.46919 * 108.77865 * 54.63615 * 17 16 15 19 19 C 1.34776 * 120.63318 * 126.36567 * 18 17 16 20 20 O 1.21613 * 120.00131 * 185.50672 * 19 18 17 21 21 C 1.47383 * 119.99807 * 5.51439 * 19 18 17 22 22 C 1.38066 * 126.42467 * 40.15293 * 21 19 18 23 23 N 1.34238 * 107.43830 * 180.22526 * 22 21 19 24 24 C 1.46488 * 125.73951 * 179.78835 * 23 22 21 25 25 N 1.39928 * 108.52195 * 359.76735 * 23 22 21 26 26 C 1.30539 * 108.89791 * 359.97438 * 25 23 22 27 27 Cl 1.73596 * 126.00788 * 179.97438 * 26 25 23 28 28 C 1.46931 * 118.73815 * 306.64364 * 18 17 16 29 29 H 1.09003 * 109.46652 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47305 * 299.99762 * 1 2 3 31 31 H 1.09000 * 109.47313 * 60.00493 * 1 2 3 32 32 H 0.96994 * 119.99855 * 94.99971 * 4 2 1 33 33 H 0.96995 * 119.99738 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.45849 * 61.29836 * 15 13 2 35 35 H 1.09001 * 109.46149 * 301.33598 * 15 13 2 36 36 H 1.08993 * 109.50216 * 178.68397 * 16 15 13 37 37 H 1.09003 * 109.52452 * 58.60420 * 16 15 13 38 38 H 1.09003 * 109.58735 * 294.84261 * 17 16 15 39 39 H 1.09007 * 109.70170 * 174.49299 * 17 16 15 40 40 H 1.07998 * 126.28282 * 359.97438 * 22 21 19 41 41 H 1.09002 * 109.47476 * 270.00064 * 24 23 22 42 42 H 1.09003 * 109.47766 * 29.99979 * 24 23 22 43 43 H 1.09002 * 109.47646 * 150.00317 * 24 23 22 44 44 H 1.08994 * 109.58944 * 173.14623 * 28 18 17 45 45 H 1.09003 * 109.58479 * 293.57052 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8926 1.0405 2.4241 7 6 2.6123 -0.6617 3.5090 8 7 2.9254 -1.9387 3.4499 9 14 2.7913 0.2704 5.1180 10 1 1.4690 0.8071 5.5288 11 1 3.3001 -0.6480 6.1681 12 1 3.7464 1.3928 4.9362 13 6 2.0401 -0.7212 -1.2492 14 1 1.6779 -1.7493 -1.2491 15 6 1.5302 -0.0003 -2.4992 16 6 2.0126 -0.7398 -3.7492 17 6 3.5442 -0.7369 -3.7801 18 7 4.0439 -1.2970 -2.5172 19 6 4.9181 -2.3228 -2.5191 20 8 5.2473 -2.8432 -1.4704 21 6 5.4753 -2.8137 -3.7922 22 6 5.8780 -2.0408 -4.8630 23 7 6.3167 -2.8751 -5.8188 24 6 6.8337 -2.4773 -7.1304 25 7 6.1976 -4.1886 -5.3513 26 6 5.7012 -4.1643 -4.1442 27 17 5.3690 -5.5476 -3.1494 28 6 3.5676 -0.7217 -1.2518 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1526 33 1 3.2487 -2.3959 4.2419 34 1 1.9125 1.0204 -2.5110 35 1 0.4405 0.0204 -2.4874 36 1 1.6298 -0.2394 -4.6385 37 1 1.6512 -1.7680 -3.7264 38 1 3.9054 0.2852 -3.8949 39 1 3.8961 -1.3445 -4.6139 40 1 5.8423 -0.9631 -4.9226 41 1 6.0127 -2.4310 -7.8459 42 1 7.3043 -1.4971 -7.0536 43 1 7.5690 -3.2077 -7.4681 44 1 3.9329 -1.3207 -0.4177 45 1 3.9307 0.3016 -1.1561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319829112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:12 Heat of formation + Delta-G solvation = 54.423515 kcal Electronic energy + Delta-G solvation = -27978.265195 eV Core-core repulsion = 24058.998644 eV Total energy + Delta-G solvation = -3919.266551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.79070 -39.70302 -37.57018 -36.82860 -35.37034 -33.57767 -32.93952 -31.69869 -31.09599 -29.58683 -28.15848 -27.38190 -25.40271 -24.04896 -23.03085 -22.43145 -21.47274 -20.88375 -19.56957 -19.25969 -17.40173 -17.02191 -16.67600 -16.11226 -15.65324 -15.25429 -14.91574 -14.77630 -14.46945 -14.08626 -13.74267 -13.63170 -13.55488 -13.51114 -13.17547 -12.91933 -12.75889 -12.55966 -12.27442 -12.01171 -11.83910 -11.75215 -11.28224 -11.07429 -10.95316 -10.85595 -10.78879 -10.65384 -10.53035 -10.22432 -10.09502 -9.81519 -9.68574 -9.56622 -9.46562 -8.93077 -8.81743 -8.33848 -6.84999 -5.64242 -2.93704 1.18161 1.22656 1.82929 2.42033 3.05576 3.36197 3.50653 3.54716 3.56582 4.08299 4.26516 4.62135 4.63985 4.69273 4.79910 4.88316 4.93923 5.00780 5.02200 5.11192 5.29374 5.39054 5.47362 5.63514 5.66725 5.75410 5.84109 5.88138 5.98413 6.07133 6.17785 6.25922 6.27808 6.32170 6.50165 6.56483 6.60050 6.80223 6.84243 6.98489 7.00620 7.16990 7.64118 7.78958 8.45683 8.53149 9.64101 10.22514 10.56905 11.57739 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013848 B = 0.003162 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.465786 B = 8853.456678 C = 9990.867793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.181 3.819 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.240 4.240 6 H 0.068 0.932 7 C -0.012 4.012 8 N -0.928 5.928 9 Si 0.903 3.097 10 H -0.288 1.288 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.104 4.104 14 H 0.070 0.930 15 C -0.114 4.114 16 C -0.133 4.133 17 C 0.102 3.898 18 N -0.607 5.607 19 C 0.585 3.415 20 O -0.512 6.512 21 C -0.261 4.261 22 C 0.102 3.898 23 N -0.353 5.353 24 C 0.097 3.903 25 N -0.284 5.284 26 C 0.167 3.833 27 Cl 0.031 6.969 28 C 0.125 3.875 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.385 0.615 33 H 0.255 0.745 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.193 0.807 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.343 2.291 -26.663 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.064 0.936 4 N -0.365 5.365 5 C -0.371 4.371 6 H 0.086 0.914 7 C -0.208 4.208 8 N -0.576 5.576 9 Si 0.735 3.265 10 H -0.215 1.215 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.124 4.124 14 H 0.089 0.911 15 C -0.152 4.152 16 C -0.171 4.171 17 C -0.021 4.021 18 N -0.341 5.341 19 C 0.372 3.628 20 O -0.386 6.386 21 C -0.277 4.277 22 C -0.048 4.048 23 N -0.133 5.133 24 C -0.043 4.043 25 N -0.110 5.110 26 C -0.026 4.026 27 Cl 0.059 6.941 28 C 0.004 3.996 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.219 0.781 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.209 0.791 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.127 0.873 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.020 1.287 -26.916 27.410 hybrid contribution -0.229 0.613 1.495 1.632 sum 4.792 1.900 -25.421 25.938 Atomic orbital electron populations 1.22486 0.99418 1.00790 0.99786 1.20162 0.91761 0.95191 0.85843 0.93595 1.42450 1.78058 1.10799 1.05240 1.19130 1.36849 0.93710 0.87399 0.91410 1.24734 1.02223 0.95918 0.97922 1.69658 1.50476 1.08563 1.28862 0.86331 0.77620 0.78626 0.83948 1.21459 1.21794 1.21363 1.21686 0.94880 1.00570 0.95239 0.91144 1.21621 1.01025 0.98951 0.93594 1.21907 0.94884 1.01633 0.98724 1.21883 0.95007 0.98643 0.86604 1.48014 1.44130 1.34201 1.07721 1.17163 0.79072 0.79509 0.87099 1.90890 1.59674 1.55986 1.32089 1.20226 1.17341 0.91678 0.98447 1.23141 0.96354 0.97798 0.87517 1.48164 1.47983 1.03307 1.13878 1.22072 1.00657 1.02142 0.79452 1.77221 1.24229 0.98159 1.11356 1.22675 0.98726 0.89663 0.91493 1.98446 1.92896 1.38317 1.64416 1.21613 0.93858 0.98840 0.85303 0.93622 0.92942 0.94351 0.78099 0.93486 0.91918 0.91266 0.91195 0.91572 0.91570 0.90242 0.79058 0.89837 0.88645 0.88612 0.87315 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.14 37.16 0.34 -2.59 16 2 C 0.18 3.50 2.48 -67.93 -0.17 3.33 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -18.17 4.52 -53.42 -0.24 -18.41 16 5 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -28.91 13.06 55.49 0.72 -28.19 16 9 Si 0.90 22.88 29.55 -169.99 -5.02 17.85 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 C -0.10 -1.68 1.96 -90.72 -0.18 -1.86 16 14 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 15 C -0.11 -1.37 4.85 -26.69 -0.13 -1.50 16 16 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 17 C 0.10 0.99 5.47 -3.71 -0.02 0.97 16 18 N -0.61 -8.74 2.98 -174.31 -0.52 -9.26 16 19 C 0.59 9.72 7.49 -12.54 -0.09 9.62 16 20 O -0.51 -10.98 16.13 5.27 0.08 -10.89 16 21 C -0.26 -3.51 5.23 -105.04 -0.55 -4.06 16 22 C 0.10 0.91 9.10 -16.56 -0.15 0.75 16 23 N -0.35 -3.05 3.98 -67.60 -0.27 -3.31 16 24 C 0.10 0.32 11.44 59.84 0.68 1.00 16 25 N -0.28 -3.56 12.50 33.18 0.41 -3.15 16 26 C 0.17 2.37 7.88 -16.90 -0.13 2.24 16 27 Cl 0.03 0.47 28.83 -51.86 -1.50 -1.03 16 28 C 0.13 2.15 5.45 -3.93 -0.02 2.13 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16 32 H 0.38 10.58 7.61 -40.82 -0.31 10.27 16 33 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.65 4.77 -51.93 -0.25 0.41 16 40 H 0.19 0.95 7.31 -52.49 -0.38 0.56 16 41 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 43 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.11 2.39 6.49 -51.93 -0.34 2.06 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -36.12 377.59 -8.02 -44.13 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.56 Total: 5.25 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.83 Total: 1.31 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: 0.11 Total: -62.32 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Atomic # 17 Polarization: 0.47 SS G_CDS: -1.50 Total: -1.03 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.12 -8.02 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319829112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.558 kcal (2) G-P(sol) polarization free energy of solvation -36.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds