Wall clock time and date at job start Sat Apr 11 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46652 * 2 1 4 4 N 1.46502 * 109.47075 * 120.00046 * 2 1 3 5 5 C 1.36936 * 119.99585 * 275.00264 * 4 2 1 6 6 H 1.07994 * 120.00212 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99604 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00075 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99932 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46704 * 59.99861 * 9 7 5 11 11 H 1.48494 * 109.47077 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.46871 * 300.00023 * 9 7 5 13 13 C 1.52999 * 109.47128 * 240.00129 * 2 1 3 14 14 H 1.09004 * 109.49626 * 299.93460 * 13 2 1 15 15 C 1.53042 * 109.49813 * 59.99700 * 13 2 1 16 16 C 1.53040 * 109.53789 * 181.31676 * 15 13 2 17 17 C 1.53195 * 109.31091 * 298.63782 * 16 15 13 18 18 N 1.46919 * 108.77865 * 54.63615 * 17 16 15 19 19 C 1.34776 * 120.63318 * 126.36567 * 18 17 16 20 20 O 1.21613 * 120.00131 * 185.50672 * 19 18 17 21 21 C 1.47383 * 119.99807 * 5.51439 * 19 18 17 22 22 C 1.38066 * 126.42467 * 40.15293 * 21 19 18 23 23 N 1.34238 * 107.43830 * 180.22526 * 22 21 19 24 24 C 1.46488 * 125.73951 * 179.78835 * 23 22 21 25 25 N 1.39928 * 108.52195 * 359.76735 * 23 22 21 26 26 C 1.30539 * 108.89791 * 359.97438 * 25 23 22 27 27 Cl 1.73596 * 126.00788 * 179.97438 * 26 25 23 28 28 C 1.46931 * 118.73815 * 306.64364 * 18 17 16 29 29 H 1.09003 * 109.46652 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47305 * 299.99762 * 1 2 3 31 31 H 1.09000 * 109.47313 * 60.00493 * 1 2 3 32 32 H 0.96994 * 119.99855 * 94.99971 * 4 2 1 33 33 H 0.96995 * 119.99738 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.45849 * 61.29836 * 15 13 2 35 35 H 1.09001 * 109.46149 * 301.33598 * 15 13 2 36 36 H 1.08993 * 109.50216 * 178.68397 * 16 15 13 37 37 H 1.09003 * 109.52452 * 58.60420 * 16 15 13 38 38 H 1.09003 * 109.58735 * 294.84261 * 17 16 15 39 39 H 1.09007 * 109.70170 * 174.49299 * 17 16 15 40 40 H 1.07998 * 126.28282 * 359.97438 * 22 21 19 41 41 H 1.09002 * 109.47476 * 270.00064 * 24 23 22 42 42 H 1.09003 * 109.47766 * 29.99979 * 24 23 22 43 43 H 1.09002 * 109.47646 * 150.00317 * 24 23 22 44 44 H 1.08994 * 109.58944 * 173.14623 * 28 18 17 45 45 H 1.09003 * 109.58479 * 293.57052 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8926 1.0405 2.4241 7 6 2.6123 -0.6617 3.5090 8 7 2.9254 -1.9387 3.4499 9 14 2.7913 0.2704 5.1180 10 1 1.4690 0.8071 5.5288 11 1 3.3001 -0.6480 6.1681 12 1 3.7464 1.3928 4.9362 13 6 2.0401 -0.7212 -1.2492 14 1 1.6779 -1.7493 -1.2491 15 6 1.5302 -0.0003 -2.4992 16 6 2.0126 -0.7398 -3.7492 17 6 3.5442 -0.7369 -3.7801 18 7 4.0439 -1.2970 -2.5172 19 6 4.9181 -2.3228 -2.5191 20 8 5.2473 -2.8432 -1.4704 21 6 5.4753 -2.8137 -3.7922 22 6 5.8780 -2.0408 -4.8630 23 7 6.3167 -2.8751 -5.8188 24 6 6.8337 -2.4773 -7.1304 25 7 6.1976 -4.1886 -5.3513 26 6 5.7012 -4.1643 -4.1442 27 17 5.3690 -5.5476 -3.1494 28 6 3.5676 -0.7217 -1.2518 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1526 33 1 3.2487 -2.3959 4.2419 34 1 1.9125 1.0204 -2.5110 35 1 0.4405 0.0204 -2.4874 36 1 1.6298 -0.2394 -4.6385 37 1 1.6512 -1.7680 -3.7264 38 1 3.9054 0.2852 -3.8949 39 1 3.8961 -1.3445 -4.6139 40 1 5.8423 -0.9631 -4.9226 41 1 6.0127 -2.4310 -7.8459 42 1 7.3043 -1.4971 -7.0536 43 1 7.5690 -3.2077 -7.4681 44 1 3.9329 -1.3207 -0.4177 45 1 3.9307 0.3016 -1.1561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319829112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:11 Heat of formation + Delta-G solvation = 28.419959 kcal Electronic energy + Delta-G solvation = -27979.392794 eV Core-core repulsion = 24058.998644 eV Total energy + Delta-G solvation = -3920.394150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.65210 -40.86480 -38.91279 -37.88838 -36.89018 -34.66193 -34.21986 -33.09884 -32.15628 -31.04710 -29.69792 -28.02418 -26.56828 -25.77021 -24.41289 -23.40032 -22.28466 -22.06365 -21.02252 -20.29792 -19.10359 -18.27712 -17.69107 -16.95755 -16.79787 -16.59830 -16.16410 -15.95514 -15.56845 -15.52772 -15.24251 -14.85521 -14.62990 -14.27395 -14.17001 -14.06198 -13.94366 -13.68274 -13.56792 -13.34314 -12.97742 -12.74367 -12.68801 -12.67089 -12.48627 -12.34270 -12.15851 -11.98330 -11.88197 -11.74772 -11.62120 -11.31816 -11.14457 -10.94673 -10.85213 -10.46951 -9.85964 -9.48909 -8.94930 -7.87664 -5.16339 0.34947 0.42337 0.78244 1.46223 1.50236 1.56183 1.67914 1.94015 2.25214 2.59372 3.36017 3.45325 3.65145 3.79234 3.89043 3.97389 4.02166 4.16801 4.18705 4.30944 4.37264 4.45140 4.48667 4.50063 4.64749 4.68933 4.73959 4.76954 4.84174 4.90583 4.98443 5.00966 5.09031 5.11108 5.22736 5.33682 5.43926 5.53847 5.60409 5.62587 5.69425 5.74449 6.14675 6.32769 6.51759 7.26476 7.37807 8.16969 8.38409 9.35743 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013848 B = 0.003162 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.465786 B = 8853.456678 C = 9990.867793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.173 3.827 3 H 0.052 0.948 4 N -0.738 5.738 5 C -0.231 4.231 6 H 0.079 0.921 7 C -0.083 4.083 8 N -0.973 5.973 9 Si 0.970 3.030 10 H -0.276 1.276 11 H -0.302 1.302 12 H -0.276 1.276 13 C -0.091 4.091 14 H 0.042 0.958 15 C -0.107 4.107 16 C -0.129 4.129 17 C 0.095 3.905 18 N -0.601 5.601 19 C 0.580 3.420 20 O -0.581 6.581 21 C -0.298 4.298 22 C 0.139 3.861 23 N -0.336 5.336 24 C 0.083 3.917 25 N -0.304 5.304 26 C 0.146 3.854 27 Cl 0.004 6.996 28 C 0.133 3.867 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.082 0.918 32 H 0.367 0.633 33 H 0.247 0.753 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.047 0.953 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.243 0.757 41 H 0.107 0.893 42 H 0.133 0.867 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 6.172 -30.929 31.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.065 3.935 3 H 0.070 0.930 4 N -0.378 5.378 5 C -0.363 4.363 6 H 0.097 0.903 7 C -0.274 4.274 8 N -0.624 5.624 9 Si 0.800 3.200 10 H -0.202 1.202 11 H -0.228 1.228 12 H -0.202 1.202 13 C -0.111 4.111 14 H 0.060 0.940 15 C -0.145 4.145 16 C -0.167 4.167 17 C -0.026 4.026 18 N -0.333 5.333 19 C 0.369 3.631 20 O -0.461 6.461 21 C -0.313 4.313 22 C -0.013 4.013 23 N -0.116 5.116 24 C -0.055 4.055 25 N -0.130 5.130 26 C -0.045 4.045 27 Cl 0.032 6.968 28 C 0.010 3.990 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.198 0.802 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.065 0.935 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.259 0.741 41 H 0.125 0.875 42 H 0.152 0.848 43 H 0.115 0.885 44 H 0.066 0.934 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.642 5.231 -31.295 32.067 hybrid contribution -0.109 -0.501 2.594 2.645 sum 4.533 4.730 -28.701 29.439 Atomic orbital electron populations 1.22333 0.97661 1.00348 1.01034 1.20482 0.92824 0.95123 0.85077 0.93015 1.42714 1.78342 1.10148 1.06577 1.19585 1.34364 0.94124 0.88241 0.90297 1.25585 1.03415 0.96793 1.01630 1.69863 1.52865 1.10494 1.29185 0.85248 0.77988 0.77251 0.79528 1.20241 1.22848 1.20238 1.21531 0.94055 0.99270 0.96288 0.93989 1.21610 1.01574 0.99505 0.91808 1.21916 0.94831 1.00775 0.99150 1.22329 0.95047 1.00717 0.84528 1.48063 1.43245 1.33542 1.08478 1.17696 0.78784 0.79154 0.87473 1.90850 1.62174 1.58260 1.34787 1.20015 1.20571 0.92042 0.98706 1.23703 0.92985 0.99308 0.85338 1.48670 1.45927 1.01847 1.15136 1.22657 1.01769 1.03943 0.77131 1.77161 1.24365 1.00883 1.10634 1.22728 1.00239 0.89374 0.92185 1.98422 1.93182 1.39787 1.65445 1.21248 0.94474 0.97966 0.85274 0.94925 0.94741 0.89938 0.80227 0.94466 0.89842 0.90301 0.86890 0.93457 0.87811 0.88136 0.74102 0.87501 0.84845 0.88527 0.93391 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 9.14 71.98 0.66 -4.67 16 2 C 0.17 6.70 2.48 44.99 0.11 6.81 16 3 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 4 N -0.74 -38.68 4.52 -322.92 -1.46 -40.13 16 5 C -0.23 -13.19 9.93 84.03 0.83 -12.36 16 6 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 7 C -0.08 -4.98 5.50 84.86 0.47 -4.51 16 8 N -0.97 -64.02 13.06 21.65 0.28 -63.73 16 9 Si 0.97 48.32 29.55 68.60 2.03 50.35 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 C -0.09 -2.95 1.96 -10.86 -0.02 -2.97 16 14 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 15 C -0.11 -2.17 4.85 30.62 0.15 -2.03 16 16 C -0.13 -1.98 6.08 30.67 0.19 -1.79 16 17 C 0.09 1.43 5.47 86.36 0.47 1.90 16 18 N -0.60 -16.93 2.98 -823.65 -2.45 -19.39 16 19 C 0.58 19.93 7.49 86.65 0.65 20.58 16 20 O -0.58 -27.25 16.13 -4.07 -0.07 -27.32 16 21 C -0.30 -7.78 5.23 -20.13 -0.11 -7.88 16 22 C 0.14 1.91 9.10 84.28 0.77 2.67 16 23 N -0.34 -4.55 3.98 -367.80 -1.46 -6.01 16 24 C 0.08 0.13 11.44 127.77 1.46 1.59 16 25 N -0.30 -7.27 12.50 -48.95 -0.61 -7.88 16 26 C 0.15 4.22 7.88 85.66 0.67 4.90 16 27 Cl 0.00 0.12 28.83 -2.72 -0.08 0.04 16 28 C 0.13 4.71 5.45 86.22 0.47 5.18 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 2.12 6.40 -2.39 -0.02 2.10 16 32 H 0.37 21.68 7.61 -92.71 -0.71 20.98 16 33 H 0.25 15.90 8.31 -92.71 -0.77 15.13 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.49 6.36 -2.39 -0.02 1.47 16 36 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 1.13 4.77 -2.38 -0.01 1.12 16 40 H 0.24 0.71 7.31 -2.91 -0.02 0.69 16 41 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.13 -0.71 8.14 -2.39 -0.02 -0.72 16 43 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.05 2.30 6.49 -2.39 -0.02 2.29 16 45 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -89.76 377.59 3.26 -86.49 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.31 Total: 20.17 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 6.77 Total: 7.42 kcal Atomic # 7 Polarization: -131.45 SS G_CDS: -5.71 Total: -137.15 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.07 Total: -27.32 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.35 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -0.08 Total: 0.04 kcal Total: -89.76 3.26 -86.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319829112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.914 kcal (2) G-P(sol) polarization free energy of solvation -89.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds