Wall clock time and date at job start Sat Apr 11 2020 06:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46836 * 2 1 4 4 N 1.46507 * 109.47061 * 240.00379 * 2 1 3 5 5 C 1.36939 * 119.99921 * 84.99779 * 4 2 1 6 6 H 1.07996 * 120.00201 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99654 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00368 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99737 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47113 * 90.00308 * 9 7 5 11 11 H 1.48505 * 109.46941 * 210.00221 * 9 7 5 12 12 H 1.48497 * 109.47286 * 329.99885 * 9 7 5 13 13 C 1.52996 * 109.47557 * 120.00270 * 2 1 3 14 14 H 1.09003 * 109.50178 * 179.97438 * 13 2 1 15 15 C 1.53045 * 109.49676 * 299.99907 * 13 2 1 16 16 C 1.53036 * 109.53900 * 181.31848 * 15 13 2 17 17 C 1.53195 * 109.31129 * 298.63205 * 16 15 13 18 18 N 1.46935 * 108.77271 * 54.63811 * 17 16 15 19 19 C 1.34769 * 120.63005 * 126.36846 * 18 17 16 20 20 O 1.21611 * 120.00045 * 175.65200 * 19 18 17 21 21 C 1.47385 * 120.00090 * 355.65727 * 19 18 17 22 22 C 1.38066 * 126.42861 * 50.26083 * 21 19 18 23 23 N 1.34226 * 107.44189 * 179.83765 * 22 21 19 24 24 C 1.46503 * 125.74055 * 180.19212 * 23 22 21 25 25 N 1.39933 * 108.52418 * 0.43223 * 23 22 21 26 26 C 1.30530 * 108.89171 * 359.72249 * 25 23 22 27 27 Cl 1.73595 * 126.00488 * 180.02562 * 26 25 23 28 28 C 1.46919 * 118.73771 * 306.38851 * 18 17 16 29 29 H 1.09002 * 109.46836 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46724 * 299.99789 * 1 2 3 31 31 H 1.08991 * 109.47362 * 60.00018 * 1 2 3 32 32 H 0.96998 * 119.99783 * 264.99650 * 4 2 1 33 33 H 0.96997 * 120.00304 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.45848 * 301.33776 * 15 13 2 35 35 H 1.08999 * 109.45731 * 61.29273 * 15 13 2 36 36 H 1.08993 * 109.50010 * 58.58345 * 16 15 13 37 37 H 1.09001 * 109.49961 * 178.68730 * 16 15 13 38 38 H 1.08998 * 109.58852 * 174.41895 * 17 16 15 39 39 H 1.08998 * 109.58822 * 294.70833 * 17 16 15 40 40 H 1.08004 * 126.27546 * 359.96244 * 22 21 19 41 41 H 1.09002 * 109.47205 * 270.29996 * 24 23 22 42 42 H 1.08999 * 109.46979 * 30.30169 * 24 23 22 43 43 H 1.09006 * 109.47357 * 150.30424 * 24 23 22 44 44 H 1.08996 * 109.59211 * 293.82457 * 28 18 17 45 45 H 1.08996 * 109.58634 * 173.39583 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1491 -0.0073 -2.3758 6 1 1.8926 1.0406 -2.4242 7 6 2.6113 -0.6618 -3.5094 8 7 2.9234 -1.9391 -3.4506 9 14 2.7889 0.2700 -5.1186 10 1 4.1512 0.8550 -5.2040 11 1 2.5779 -0.6615 -6.2558 12 1 1.7788 1.3570 -5.1753 13 6 2.0401 -0.7213 1.2491 14 1 3.1301 -0.7219 1.2493 15 6 1.5303 -0.0003 2.4992 16 6 2.0670 -0.7016 3.7491 17 6 1.5536 -2.1447 3.7801 18 7 1.9152 -2.8024 2.5170 19 6 2.5909 -3.9685 2.5189 20 8 2.8152 -4.5430 1.4707 21 6 3.0578 -4.5476 3.7912 22 6 2.3001 -4.7478 4.9279 23 7 3.1013 -5.2977 5.8538 24 6 2.7040 -5.6796 7.2112 25 7 4.3812 -5.4399 5.3063 26 6 4.3674 -4.9967 4.0786 27 17 5.7191 -4.9648 2.9899 28 6 1.5265 -2.1645 1.2518 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.2491 -1.6317 -1.1527 33 1 3.2460 -2.3965 -4.2428 34 1 1.8740 1.0340 2.4874 35 1 0.4406 -0.0205 2.5110 36 1 3.1566 -0.7036 3.7256 37 1 1.7226 -0.1739 4.6385 38 1 2.0113 -2.6775 4.6136 39 1 0.4700 -2.1446 3.8974 40 1 1.2540 -4.5079 5.0490 41 1 2.8535 -4.8356 7.8846 42 1 1.6522 -5.9657 7.2151 43 1 3.3108 -6.5217 7.5441 44 1 0.4404 -2.1660 1.1603 45 1 1.9663 -2.7104 0.4172 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319829113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:14 Heat of formation + Delta-G solvation = 56.636722 kcal Electronic energy + Delta-G solvation = -28060.608903 eV Core-core repulsion = 24141.438323 eV Total energy + Delta-G solvation = -3919.170579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.79553 -39.77888 -37.65430 -36.84780 -35.37417 -33.58523 -32.93231 -31.80164 -31.03337 -29.55837 -27.87411 -27.40423 -25.44183 -24.39684 -23.15681 -22.52018 -21.53002 -21.03698 -19.68119 -18.58366 -17.54334 -17.05797 -16.70704 -16.09048 -15.69054 -15.25511 -14.92917 -14.70823 -14.57381 -14.12242 -13.96798 -13.71122 -13.58962 -13.44136 -13.20107 -12.90901 -12.69405 -12.65845 -12.37673 -11.92837 -11.82042 -11.76425 -11.50314 -11.10472 -10.94981 -10.86563 -10.79619 -10.56566 -10.39812 -10.19385 -10.15804 -9.85962 -9.71071 -9.59937 -9.45662 -8.92980 -8.82163 -8.34642 -6.86147 -5.64896 -2.94648 1.19426 1.21930 1.86084 2.41314 2.93268 3.30120 3.50013 3.54485 3.56822 4.08221 4.26377 4.61920 4.63037 4.67404 4.79397 4.88300 4.93311 5.00607 5.02873 5.11634 5.28458 5.37498 5.47139 5.62022 5.66451 5.72561 5.82050 5.89277 5.93111 6.01941 6.13577 6.19036 6.30799 6.32185 6.42540 6.48209 6.64874 6.72395 6.84473 6.95728 6.99719 7.19159 7.59198 7.79025 8.40588 8.52636 9.63432 10.21943 10.55900 11.57090 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014879 B = 0.003170 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.364178 B = 8830.964916 C =10119.712027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.181 3.819 3 H 0.048 0.952 4 N -0.725 5.725 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.928 5.928 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.104 4.104 14 H 0.073 0.927 15 C -0.114 4.114 16 C -0.134 4.134 17 C 0.103 3.897 18 N -0.604 5.604 19 C 0.586 3.414 20 O -0.513 6.513 21 C -0.259 4.259 22 C 0.099 3.901 23 N -0.352 5.352 24 C 0.098 3.902 25 N -0.283 5.283 26 C 0.165 3.835 27 Cl 0.030 6.970 28 C 0.119 3.881 29 H 0.048 0.952 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.385 0.615 33 H 0.255 0.745 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.192 0.808 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.174 -4.120 26.909 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.368 5.368 5 C -0.371 4.371 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.576 5.576 9 Si 0.735 3.265 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.124 4.124 14 H 0.092 0.908 15 C -0.152 4.152 16 C -0.172 4.172 17 C -0.021 4.021 18 N -0.338 5.338 19 C 0.372 3.628 20 O -0.388 6.388 21 C -0.274 4.274 22 C -0.051 4.051 23 N -0.133 5.133 24 C -0.043 4.043 25 N -0.108 5.108 26 C -0.028 4.028 27 Cl 0.058 6.942 28 C -0.002 4.002 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.209 0.791 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.245 -4.895 27.135 27.763 hybrid contribution -0.212 0.574 -1.493 1.613 sum -3.457 -4.321 25.642 26.232 Atomic orbital electron populations 1.22572 0.99587 1.00841 0.99891 1.20164 0.91784 0.95251 0.85802 0.93395 1.42522 1.78116 1.10848 1.05278 1.19200 1.36718 0.93769 0.87385 0.91314 1.24746 1.02273 0.95933 0.97969 1.69673 1.50630 1.08503 1.28800 0.86244 0.77686 0.78563 0.83993 1.21845 1.21860 1.20890 1.21783 1.01046 0.94312 0.95263 0.90815 1.21616 1.00805 0.99179 0.93572 1.21909 1.01521 0.95045 0.98726 1.21859 0.99793 0.93908 0.86511 1.48016 1.56311 1.21731 1.07720 1.17181 0.77823 0.80621 0.87135 1.90880 1.55554 1.60072 1.32272 1.20187 0.93598 1.16562 0.97087 1.23054 0.98040 0.96345 0.87633 1.48146 1.06217 1.46698 1.12256 1.22071 1.01915 1.02741 0.77564 1.77218 0.99524 1.25078 1.08986 1.22652 0.90231 0.98820 0.91056 1.98451 1.40954 1.96780 1.57981 1.21824 0.99806 0.93219 0.85391 0.93289 0.94313 0.92940 0.77977 0.93508 0.91706 0.91439 0.91565 0.91191 0.90227 0.91415 0.79096 0.89855 0.88660 0.88606 0.91142 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 8.79 37.16 0.33 -2.61 16 2 C 0.18 3.52 2.72 -67.93 -0.18 3.34 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 N -0.73 -18.40 5.04 -53.42 -0.27 -18.67 16 5 C -0.24 -6.75 9.93 -15.06 -0.15 -6.90 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -29.06 13.06 55.49 0.72 -28.34 16 9 Si 0.90 22.95 29.55 -169.99 -5.02 17.93 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 C -0.10 -1.70 2.33 -90.50 -0.21 -1.91 16 14 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 15 C -0.11 -1.37 4.78 -26.69 -0.13 -1.50 16 16 C -0.13 -1.33 6.08 -26.61 -0.16 -1.49 16 17 C 0.10 1.00 5.90 -3.70 -0.02 0.97 16 18 N -0.60 -8.61 2.97 -174.05 -0.52 -9.13 16 19 C 0.59 9.62 7.45 -12.54 -0.09 9.53 16 20 O -0.51 -10.86 16.54 5.27 0.09 -10.78 16 21 C -0.26 -3.45 5.15 -105.04 -0.54 -3.99 16 22 C 0.10 0.87 9.13 -16.57 -0.15 0.71 16 23 N -0.35 -3.02 3.98 -67.59 -0.27 -3.28 16 24 C 0.10 0.31 11.44 59.85 0.68 1.00 16 25 N -0.28 -3.54 12.50 33.18 0.41 -3.12 16 26 C 0.16 2.34 7.89 -16.90 -0.13 2.21 16 27 Cl 0.03 0.46 29.19 -51.86 -1.51 -1.06 16 28 C 0.12 2.00 5.20 -3.71 -0.02 1.98 16 29 H 0.05 0.85 6.32 -51.93 -0.33 0.53 16 30 H 0.04 0.54 6.46 -51.93 -0.34 0.21 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.39 10.57 6.17 -40.82 -0.25 10.32 16 33 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.75 6.50 -51.93 -0.34 0.42 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.65 4.58 -51.93 -0.24 0.41 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.19 0.89 7.61 -52.48 -0.40 0.49 16 41 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 43 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 1.12 6.17 -51.93 -0.32 0.80 16 45 H 0.10 2.17 5.62 -51.93 -0.29 1.88 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -36.59 373.36 -7.89 -44.49 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.27 Total: 5.47 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -0.88 Total: 0.86 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: 0.08 Total: -62.54 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Atomic # 17 Polarization: 0.46 SS G_CDS: -1.51 Total: -1.06 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.59 -7.89 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319829113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.123 kcal (2) G-P(sol) polarization free energy of solvation -36.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds