Wall clock time and date at job start Sat Apr 11 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46836 * 2 1 4 4 N 1.46507 * 109.47061 * 240.00379 * 2 1 3 5 5 C 1.36939 * 119.99921 * 84.99779 * 4 2 1 6 6 H 1.07996 * 120.00201 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99654 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00368 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99737 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47113 * 90.00308 * 9 7 5 11 11 H 1.48505 * 109.46941 * 210.00221 * 9 7 5 12 12 H 1.48497 * 109.47286 * 329.99885 * 9 7 5 13 13 C 1.52996 * 109.47557 * 120.00270 * 2 1 3 14 14 H 1.09003 * 109.50178 * 179.97438 * 13 2 1 15 15 C 1.53045 * 109.49676 * 299.99907 * 13 2 1 16 16 C 1.53036 * 109.53900 * 181.31848 * 15 13 2 17 17 C 1.53195 * 109.31129 * 298.63205 * 16 15 13 18 18 N 1.46935 * 108.77271 * 54.63811 * 17 16 15 19 19 C 1.34769 * 120.63005 * 126.36846 * 18 17 16 20 20 O 1.21611 * 120.00045 * 175.65200 * 19 18 17 21 21 C 1.47385 * 120.00090 * 355.65727 * 19 18 17 22 22 C 1.38066 * 126.42861 * 50.26083 * 21 19 18 23 23 N 1.34226 * 107.44189 * 179.83765 * 22 21 19 24 24 C 1.46503 * 125.74055 * 180.19212 * 23 22 21 25 25 N 1.39933 * 108.52418 * 0.43223 * 23 22 21 26 26 C 1.30530 * 108.89171 * 359.72249 * 25 23 22 27 27 Cl 1.73595 * 126.00488 * 180.02562 * 26 25 23 28 28 C 1.46919 * 118.73771 * 306.38851 * 18 17 16 29 29 H 1.09002 * 109.46836 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46724 * 299.99789 * 1 2 3 31 31 H 1.08991 * 109.47362 * 60.00018 * 1 2 3 32 32 H 0.96998 * 119.99783 * 264.99650 * 4 2 1 33 33 H 0.96997 * 120.00304 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.45848 * 301.33776 * 15 13 2 35 35 H 1.08999 * 109.45731 * 61.29273 * 15 13 2 36 36 H 1.08993 * 109.50010 * 58.58345 * 16 15 13 37 37 H 1.09001 * 109.49961 * 178.68730 * 16 15 13 38 38 H 1.08998 * 109.58852 * 174.41895 * 17 16 15 39 39 H 1.08998 * 109.58822 * 294.70833 * 17 16 15 40 40 H 1.08004 * 126.27546 * 359.96244 * 22 21 19 41 41 H 1.09002 * 109.47205 * 270.29996 * 24 23 22 42 42 H 1.08999 * 109.46979 * 30.30169 * 24 23 22 43 43 H 1.09006 * 109.47357 * 150.30424 * 24 23 22 44 44 H 1.08996 * 109.59211 * 293.82457 * 28 18 17 45 45 H 1.08996 * 109.58634 * 173.39583 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1491 -0.0073 -2.3758 6 1 1.8926 1.0406 -2.4242 7 6 2.6113 -0.6618 -3.5094 8 7 2.9234 -1.9391 -3.4506 9 14 2.7889 0.2700 -5.1186 10 1 4.1512 0.8550 -5.2040 11 1 2.5779 -0.6615 -6.2558 12 1 1.7788 1.3570 -5.1753 13 6 2.0401 -0.7213 1.2491 14 1 3.1301 -0.7219 1.2493 15 6 1.5303 -0.0003 2.4992 16 6 2.0670 -0.7016 3.7491 17 6 1.5536 -2.1447 3.7801 18 7 1.9152 -2.8024 2.5170 19 6 2.5909 -3.9685 2.5189 20 8 2.8152 -4.5430 1.4707 21 6 3.0578 -4.5476 3.7912 22 6 2.3001 -4.7478 4.9279 23 7 3.1013 -5.2977 5.8538 24 6 2.7040 -5.6796 7.2112 25 7 4.3812 -5.4399 5.3063 26 6 4.3674 -4.9967 4.0786 27 17 5.7191 -4.9648 2.9899 28 6 1.5265 -2.1645 1.2518 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.2491 -1.6317 -1.1527 33 1 3.2460 -2.3965 -4.2428 34 1 1.8740 1.0340 2.4874 35 1 0.4406 -0.0205 2.5110 36 1 3.1566 -0.7036 3.7256 37 1 1.7226 -0.1739 4.6385 38 1 2.0113 -2.6775 4.6136 39 1 0.4700 -2.1446 3.8974 40 1 1.2540 -4.5079 5.0490 41 1 2.8535 -4.8356 7.8846 42 1 1.6522 -5.9657 7.2151 43 1 3.3108 -6.5217 7.5441 44 1 0.4404 -2.1660 1.1603 45 1 1.9663 -2.7104 0.4172 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319829113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:13 Heat of formation + Delta-G solvation = 30.008711 kcal Electronic energy + Delta-G solvation = -28061.763580 eV Core-core repulsion = 24141.438323 eV Total energy + Delta-G solvation = -3920.325257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.64987 -40.93802 -38.99846 -37.91272 -36.87931 -34.68264 -34.21307 -33.15985 -32.08586 -31.10465 -29.32897 -28.07205 -26.51459 -26.13444 -24.64554 -23.49014 -22.35751 -22.17949 -20.82366 -19.86004 -19.23133 -18.33752 -17.71942 -16.97001 -16.76675 -16.65286 -16.12358 -15.96096 -15.68783 -15.48663 -15.31315 -15.11910 -14.70735 -14.20511 -14.11946 -14.10291 -13.87667 -13.80667 -13.56831 -13.26721 -12.96504 -12.81976 -12.71292 -12.68930 -12.60597 -12.28078 -12.10215 -11.93579 -11.81506 -11.74423 -11.69510 -11.34630 -11.14095 -10.94836 -10.89997 -10.47323 -9.83848 -9.49313 -8.97680 -7.89788 -5.19100 0.33987 0.44973 0.82634 1.45156 1.47989 1.56260 1.65394 1.83288 2.22923 2.57691 3.36030 3.42701 3.66565 3.79255 3.92366 3.93686 3.99468 4.15323 4.17528 4.28254 4.37830 4.45036 4.45953 4.49190 4.63491 4.67786 4.73297 4.77227 4.77994 4.88644 4.95111 4.96959 5.14775 5.17830 5.19904 5.29324 5.42968 5.49698 5.56449 5.61885 5.73878 5.75849 6.15318 6.31237 6.48485 7.22723 7.36113 8.16056 8.36528 9.33614 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014879 B = 0.003170 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.364178 B = 8830.964916 C =10119.712027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.044 0.956 4 N -0.742 5.742 5 C -0.234 4.234 6 H 0.078 0.922 7 C -0.083 4.083 8 N -0.973 5.973 9 Si 0.972 3.028 10 H -0.290 1.290 11 H -0.299 1.299 12 H -0.265 1.265 13 C -0.092 4.092 14 H 0.038 0.962 15 C -0.107 4.107 16 C -0.129 4.129 17 C 0.096 3.904 18 N -0.599 5.599 19 C 0.582 3.418 20 O -0.581 6.581 21 C -0.295 4.295 22 C 0.136 3.864 23 N -0.336 5.336 24 C 0.083 3.917 25 N -0.304 5.304 26 C 0.143 3.857 27 Cl 0.001 6.999 28 C 0.128 3.872 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.031 0.969 32 H 0.370 0.630 33 H 0.248 0.752 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.244 0.756 41 H 0.106 0.894 42 H 0.134 0.866 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.233 -2.450 31.214 32.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.063 3.937 3 H 0.062 0.938 4 N -0.383 5.383 5 C -0.366 4.366 6 H 0.096 0.904 7 C -0.275 4.275 8 N -0.624 5.624 9 Si 0.801 3.199 10 H -0.217 1.217 11 H -0.226 1.226 12 H -0.190 1.190 13 C -0.112 4.112 14 H 0.057 0.943 15 C -0.145 4.145 16 C -0.167 4.167 17 C -0.025 4.025 18 N -0.331 5.331 19 C 0.371 3.629 20 O -0.460 6.460 21 C -0.311 4.311 22 C -0.016 4.016 23 N -0.116 5.116 24 C -0.055 4.055 25 N -0.130 5.130 26 C -0.048 4.048 27 Cl 0.029 6.971 28 C 0.005 3.995 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.202 0.798 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.260 0.740 41 H 0.125 0.875 42 H 0.152 0.848 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.331 -3.157 31.553 32.336 hybrid contribution 0.673 0.073 -2.602 2.688 sum -5.658 -3.084 28.951 29.660 Atomic orbital electron populations 1.22382 0.97015 1.00994 1.01125 1.20483 0.93443 0.94716 0.85049 0.93788 1.42823 1.78509 1.10389 1.06586 1.19649 1.34465 0.94137 0.88349 0.90410 1.25608 1.03361 0.96824 1.01692 1.69876 1.52898 1.10411 1.29226 0.85151 0.77836 0.77429 0.79439 1.21716 1.22556 1.18978 1.21609 0.98882 0.94419 0.96333 0.94336 1.21606 1.02021 0.99037 0.91801 1.21916 1.00330 0.95348 0.99123 1.22300 1.02234 0.93445 0.84544 1.48085 1.55425 1.21092 1.08507 1.17691 0.77020 0.80731 0.87494 1.90840 1.58106 1.62155 1.34947 1.19994 0.94135 1.19543 0.97445 1.23654 0.99250 0.93274 0.85398 1.48651 1.04670 1.44587 1.13664 1.22654 1.04091 1.03823 0.74887 1.77153 1.02191 1.25356 1.08294 1.22690 0.90030 1.00446 0.91601 1.98426 1.42490 1.96985 1.59236 1.21489 0.99894 0.92789 0.85320 0.93653 0.89734 0.94937 0.79775 0.94356 0.90995 0.89164 0.93642 0.86905 0.88056 0.87661 0.73955 0.87539 0.84824 0.88570 0.89754 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.15 8.79 71.98 0.63 -4.52 16 2 C 0.17 6.73 2.72 44.99 0.12 6.85 16 3 H 0.04 1.75 8.08 -2.39 -0.02 1.74 16 4 N -0.74 -39.40 5.04 -322.93 -1.63 -41.03 16 5 C -0.23 -13.55 9.93 84.03 0.83 -12.72 16 6 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 7 C -0.08 -5.05 5.50 84.86 0.47 -4.59 16 8 N -0.97 -64.26 13.06 21.65 0.28 -63.98 16 9 Si 0.97 48.60 29.55 68.60 2.03 50.63 16 10 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 11 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 C -0.09 -3.03 2.33 -10.72 -0.02 -3.06 16 14 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 15 C -0.11 -2.21 4.78 30.62 0.15 -2.06 16 16 C -0.13 -2.03 6.08 30.67 0.19 -1.85 16 17 C 0.10 1.44 5.90 86.36 0.51 1.95 16 18 N -0.60 -16.68 2.97 -822.84 -2.45 -19.12 16 19 C 0.58 19.71 7.45 86.65 0.65 20.36 16 20 O -0.58 -26.79 16.54 -4.07 -0.07 -26.86 16 21 C -0.30 -7.65 5.15 -20.13 -0.10 -7.75 16 22 C 0.14 1.83 9.13 84.29 0.77 2.60 16 23 N -0.34 -4.50 3.98 -367.77 -1.46 -5.97 16 24 C 0.08 0.12 11.44 127.77 1.46 1.58 16 25 N -0.30 -7.27 12.50 -48.95 -0.61 -7.88 16 26 C 0.14 4.15 7.89 85.66 0.68 4.83 16 27 Cl 0.00 0.03 29.19 -2.72 -0.08 -0.05 16 28 C 0.13 4.41 5.20 86.36 0.45 4.86 16 29 H 0.04 1.53 6.32 -2.39 -0.02 1.51 16 30 H 0.08 2.02 6.46 -2.39 -0.02 2.01 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.37 21.85 6.17 -92.71 -0.57 21.28 16 33 H 0.25 15.94 8.31 -92.71 -0.77 15.17 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.51 6.50 -2.39 -0.02 1.49 16 36 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.11 0.94 8.14 -2.39 -0.02 0.93 16 38 H 0.10 1.11 4.58 -2.39 -0.01 1.10 16 39 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 40 H 0.24 0.55 7.61 -2.91 -0.02 0.53 16 41 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.13 -0.73 8.14 -2.39 -0.02 -0.75 16 43 H 0.10 0.22 8.14 -2.38 -0.02 0.20 16 44 H 0.08 2.63 6.17 -2.39 -0.01 2.61 16 45 H 0.04 2.10 5.62 -2.39 -0.01 2.08 16 Total: -1.00 -90.85 373.36 3.24 -87.61 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.45 Total: 20.18 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 6.77 Total: 6.47 kcal Atomic # 7 Polarization: -132.12 SS G_CDS: -5.87 Total: -137.98 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.07 Total: -26.86 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.63 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.08 Total: -0.05 kcal Total: -90.85 3.24 -87.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319829113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.621 kcal (2) G-P(sol) polarization free energy of solvation -90.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds