Wall clock time and date at job start Sat Apr 11 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46768 * 2 1 4 4 N 1.46491 * 109.47227 * 239.99746 * 2 1 3 5 5 C 1.36939 * 120.00531 * 85.00079 * 4 2 1 6 6 H 1.08000 * 119.99327 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00482 * 180.02562 * 5 4 2 8 8 N 1.31614 * 119.99875 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99944 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47495 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47322 * 119.99616 * 9 7 5 12 12 H 1.48501 * 109.46888 * 239.99327 * 9 7 5 13 13 C 1.52997 * 109.46790 * 119.99504 * 2 1 3 14 14 H 1.08995 * 109.49812 * 60.06802 * 13 2 1 15 15 C 1.53039 * 109.50044 * 299.99773 * 13 2 1 16 16 C 1.53037 * 109.53713 * 178.68481 * 15 13 2 17 17 C 1.53194 * 109.31420 * 61.36858 * 16 15 13 18 18 N 1.46924 * 108.77565 * 305.36667 * 17 16 15 19 19 C 1.34781 * 120.62776 * 233.58824 * 18 17 16 20 20 O 1.21611 * 119.99728 * 174.36243 * 19 18 17 21 21 C 1.47377 * 120.00059 * 354.62768 * 19 18 17 22 22 C 1.38071 * 126.42662 * 319.21153 * 21 19 18 23 23 N 1.34233 * 107.44172 * 179.89142 * 22 21 19 24 24 C 1.46496 * 125.73984 * 180.10006 * 23 22 21 25 25 N 1.39939 * 108.52103 * 0.37209 * 23 22 21 26 26 C 1.30527 * 108.89066 * 359.76669 * 25 23 22 27 27 Cl 1.73602 * 125.99915 * 179.97438 * 26 25 23 28 28 C 1.46926 * 118.74025 * 53.85336 * 18 17 16 29 29 H 1.08998 * 109.46875 * 60.00468 * 1 2 3 30 30 H 1.09000 * 109.47359 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47262 * 300.00528 * 1 2 3 32 32 H 0.96999 * 119.99794 * 264.99998 * 4 2 1 33 33 H 0.97009 * 120.00104 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.45795 * 58.66758 * 15 13 2 35 35 H 1.08997 * 109.44917 * 298.70170 * 15 13 2 36 36 H 1.08998 * 109.50232 * 301.41629 * 16 15 13 37 37 H 1.09004 * 109.52455 * 181.33501 * 16 15 13 38 38 H 1.08994 * 109.58917 * 185.57189 * 17 16 15 39 39 H 1.09003 * 109.58535 * 65.14780 * 17 16 15 40 40 H 1.07999 * 126.27795 * 0.02562 * 22 21 19 41 41 H 1.09000 * 109.47522 * 270.29151 * 24 23 22 42 42 H 1.08999 * 109.46962 * 30.29430 * 24 23 22 43 43 H 1.09003 * 109.47280 * 150.29088 * 24 23 22 44 44 H 1.09001 * 109.58266 * 65.93193 * 28 18 17 45 45 H 1.08998 * 109.58353 * 186.35316 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8919 1.0402 -2.4244 7 6 2.6114 -0.6622 -3.5092 8 7 2.9244 -1.9392 -3.4500 9 14 2.7892 0.2695 -5.1185 10 1 2.3743 1.6817 -4.9214 11 1 4.2059 0.2266 -5.5614 12 1 1.9281 -0.3594 -6.1521 13 6 2.0399 -0.7211 1.2493 14 1 1.6778 -1.7492 1.2492 15 6 1.5302 -0.0001 2.4992 16 6 2.0125 -0.7396 3.7492 17 6 3.5441 -0.7366 3.7803 18 7 4.0438 -1.2968 2.5172 19 6 4.9187 -2.3220 2.5193 20 8 5.2462 -2.8440 1.4708 21 6 5.4741 -2.8143 3.7926 22 6 5.8859 -2.0420 4.8604 23 7 6.3216 -2.8772 5.8167 24 6 6.8479 -2.4801 7.1249 25 7 6.1943 -4.1908 5.3513 26 6 5.6909 -4.1657 4.1473 27 17 5.3483 -5.5487 3.1555 28 6 3.5762 -0.7143 1.2520 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.2490 -1.6318 -1.1524 33 1 3.2478 -2.3965 -4.2420 34 1 0.4404 0.0206 2.4874 35 1 1.9126 1.0205 2.5108 36 1 1.6512 -1.7677 3.7259 37 1 1.6297 -0.2395 4.6389 38 1 3.8939 -1.3456 4.6138 39 1 3.9053 0.2854 3.8948 40 1 5.8600 -0.9638 4.9169 41 1 7.9257 -2.3337 7.0538 42 1 6.3748 -1.5500 7.4398 43 1 6.6348 -3.2613 7.8547 44 1 3.9399 0.3095 1.1647 45 1 3.9472 -1.3085 0.4170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319829114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:17 Heat of formation + Delta-G solvation = 54.102568 kcal Electronic energy + Delta-G solvation = -27975.664278 eV Core-core repulsion = 24056.383809 eV Total energy + Delta-G solvation = -3919.280469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78907 -39.68648 -37.55582 -36.82828 -35.36875 -33.57774 -32.93763 -31.69529 -31.08938 -29.57149 -28.15158 -27.38054 -25.39310 -24.05677 -23.03177 -22.42619 -21.47339 -20.88600 -19.55997 -19.26597 -17.40428 -17.02200 -16.67421 -16.10840 -15.66480 -15.24818 -14.91149 -14.77715 -14.45922 -14.07839 -13.74718 -13.63034 -13.55494 -13.51500 -13.17323 -12.91475 -12.76103 -12.56014 -12.28131 -12.01114 -11.83519 -11.75312 -11.29031 -11.07147 -10.95483 -10.85850 -10.80830 -10.66044 -10.53028 -10.19949 -10.07768 -9.80284 -9.68628 -9.56756 -9.47288 -8.93180 -8.82857 -8.33488 -6.84915 -5.64713 -2.94062 1.18253 1.22557 1.83073 2.42043 3.05379 3.35963 3.50045 3.54716 3.57793 4.08384 4.26507 4.61741 4.64151 4.69207 4.80068 4.88424 4.94031 5.00807 5.02370 5.11424 5.29099 5.38445 5.47409 5.63488 5.66570 5.74760 5.84408 5.87397 5.98478 6.07087 6.17661 6.25931 6.27902 6.32152 6.49797 6.56195 6.60011 6.79638 6.84191 6.98307 7.00492 7.16869 7.64029 7.79755 8.45566 8.52645 9.63803 10.22332 10.56630 11.57373 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013854 B = 0.003160 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.569178 B = 8858.048560 C = 9986.351545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.180 3.820 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.927 5.927 9 Si 0.902 3.098 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.293 1.293 13 C -0.103 4.103 14 H 0.071 0.929 15 C -0.114 4.114 16 C -0.133 4.133 17 C 0.102 3.898 18 N -0.607 5.607 19 C 0.585 3.415 20 O -0.512 6.512 21 C -0.261 4.261 22 C 0.102 3.898 23 N -0.353 5.353 24 C 0.097 3.903 25 N -0.284 5.284 26 C 0.167 3.833 27 Cl 0.031 6.969 28 C 0.125 3.875 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.385 0.615 33 H 0.254 0.746 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.192 0.808 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.064 0.936 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.253 2.348 26.756 27.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.064 0.936 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.575 5.575 9 Si 0.734 3.266 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.123 4.123 14 H 0.089 0.911 15 C -0.152 4.152 16 C -0.171 4.171 17 C -0.021 4.021 18 N -0.341 5.341 19 C 0.372 3.628 20 O -0.386 6.386 21 C -0.277 4.277 22 C -0.048 4.048 23 N -0.133 5.133 24 C -0.043 4.043 25 N -0.110 5.110 26 C -0.026 4.026 27 Cl 0.059 6.941 28 C 0.004 3.996 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.219 0.781 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.209 0.791 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.082 0.918 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.918 1.356 27.017 27.494 hybrid contribution -0.193 0.594 -1.512 1.636 sum 4.725 1.950 25.505 26.012 Atomic orbital electron populations 1.22487 0.99430 1.00782 0.99786 1.20163 0.91752 0.95203 0.85882 0.93600 1.42466 1.78027 1.10813 1.05263 1.19218 1.36599 0.93748 0.87341 0.91310 1.24734 1.02292 0.95921 0.97932 1.69682 1.50631 1.08562 1.28638 0.86189 0.77267 0.78726 0.84413 1.20685 1.21955 1.22041 1.21838 0.94762 1.00542 0.95167 0.91094 1.21621 1.01012 0.98952 0.93616 1.21908 0.94891 1.01634 0.98707 1.21875 0.95012 0.98613 0.86600 1.48023 1.44202 1.34125 1.07755 1.17166 0.79020 0.79570 0.87092 1.90890 1.59676 1.55941 1.32122 1.20226 1.17324 0.91637 0.98506 1.23134 0.96384 0.97770 0.87520 1.48168 1.47873 1.03272 1.14023 1.22072 1.00196 1.02206 0.79840 1.77221 1.23996 0.98162 1.11580 1.22672 0.98634 0.89656 0.91602 1.98447 1.92672 1.38360 1.64608 1.21797 0.93850 0.98656 0.85298 0.92944 0.93624 0.94358 0.78105 0.93599 0.91276 0.91927 0.91570 0.91204 0.90245 0.91580 0.79071 0.89927 0.88610 0.88562 0.91753 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.14 37.16 0.34 -2.59 16 2 C 0.18 3.49 2.47 -67.94 -0.17 3.32 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -18.15 4.52 -53.43 -0.24 -18.39 16 5 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.89 13.06 55.49 0.72 -28.17 16 9 Si 0.90 22.87 29.55 -169.99 -5.02 17.85 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 13 C -0.10 -1.67 1.99 -90.28 -0.18 -1.85 16 14 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 15 C -0.11 -1.36 4.85 -26.69 -0.13 -1.49 16 16 C -0.13 -1.31 6.08 -26.61 -0.16 -1.48 16 17 C 0.10 0.99 5.48 -3.71 -0.02 0.97 16 18 N -0.61 -8.72 2.97 -173.79 -0.52 -9.24 16 19 C 0.59 9.70 7.49 -12.54 -0.09 9.61 16 20 O -0.51 -10.97 16.14 5.27 0.09 -10.89 16 21 C -0.26 -3.51 5.21 -105.04 -0.55 -4.05 16 22 C 0.10 0.90 9.11 -16.56 -0.15 0.75 16 23 N -0.35 -3.04 3.98 -67.60 -0.27 -3.31 16 24 C 0.10 0.32 11.44 59.84 0.68 1.01 16 25 N -0.28 -3.56 12.50 33.18 0.41 -3.14 16 26 C 0.17 2.37 7.88 -16.91 -0.13 2.24 16 27 Cl 0.03 0.46 28.84 -51.86 -1.50 -1.03 16 28 C 0.13 2.15 5.51 -3.48 -0.02 2.13 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16 32 H 0.38 10.57 7.64 -40.82 -0.31 10.26 16 33 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.07 0.80 6.36 -51.93 -0.33 0.47 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.65 4.81 -51.93 -0.25 0.40 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.19 0.94 7.35 -52.49 -0.39 0.56 16 41 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 43 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.11 2.39 6.53 -51.93 -0.34 2.05 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -36.17 377.83 -8.02 -44.19 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.56 Total: 5.11 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -0.82 Total: 1.33 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: 0.11 Total: -62.25 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Atomic # 17 Polarization: 0.46 SS G_CDS: -1.50 Total: -1.03 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.17 -8.02 -44.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319829114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.288 kcal (2) G-P(sol) polarization free energy of solvation -36.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds