Wall clock time and date at job start Sat Apr 11 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46768 * 2 1 4 4 N 1.46491 * 109.47227 * 239.99746 * 2 1 3 5 5 C 1.36939 * 120.00531 * 85.00079 * 4 2 1 6 6 H 1.08000 * 119.99327 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00482 * 180.02562 * 5 4 2 8 8 N 1.31614 * 119.99875 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99944 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47495 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47322 * 119.99616 * 9 7 5 12 12 H 1.48501 * 109.46888 * 239.99327 * 9 7 5 13 13 C 1.52997 * 109.46790 * 119.99504 * 2 1 3 14 14 H 1.08995 * 109.49812 * 60.06802 * 13 2 1 15 15 C 1.53039 * 109.50044 * 299.99773 * 13 2 1 16 16 C 1.53037 * 109.53713 * 178.68481 * 15 13 2 17 17 C 1.53194 * 109.31420 * 61.36858 * 16 15 13 18 18 N 1.46924 * 108.77565 * 305.36667 * 17 16 15 19 19 C 1.34781 * 120.62776 * 233.58824 * 18 17 16 20 20 O 1.21611 * 119.99728 * 174.36243 * 19 18 17 21 21 C 1.47377 * 120.00059 * 354.62768 * 19 18 17 22 22 C 1.38071 * 126.42662 * 319.21153 * 21 19 18 23 23 N 1.34233 * 107.44172 * 179.89142 * 22 21 19 24 24 C 1.46496 * 125.73984 * 180.10006 * 23 22 21 25 25 N 1.39939 * 108.52103 * 0.37209 * 23 22 21 26 26 C 1.30527 * 108.89066 * 359.76669 * 25 23 22 27 27 Cl 1.73602 * 125.99915 * 179.97438 * 26 25 23 28 28 C 1.46926 * 118.74025 * 53.85336 * 18 17 16 29 29 H 1.08998 * 109.46875 * 60.00468 * 1 2 3 30 30 H 1.09000 * 109.47359 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47262 * 300.00528 * 1 2 3 32 32 H 0.96999 * 119.99794 * 264.99998 * 4 2 1 33 33 H 0.97009 * 120.00104 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.45795 * 58.66758 * 15 13 2 35 35 H 1.08997 * 109.44917 * 298.70170 * 15 13 2 36 36 H 1.08998 * 109.50232 * 301.41629 * 16 15 13 37 37 H 1.09004 * 109.52455 * 181.33501 * 16 15 13 38 38 H 1.08994 * 109.58917 * 185.57189 * 17 16 15 39 39 H 1.09003 * 109.58535 * 65.14780 * 17 16 15 40 40 H 1.07999 * 126.27795 * 0.02562 * 22 21 19 41 41 H 1.09000 * 109.47522 * 270.29151 * 24 23 22 42 42 H 1.08999 * 109.46962 * 30.29430 * 24 23 22 43 43 H 1.09003 * 109.47280 * 150.29088 * 24 23 22 44 44 H 1.09001 * 109.58266 * 65.93193 * 28 18 17 45 45 H 1.08998 * 109.58353 * 186.35316 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8919 1.0402 -2.4244 7 6 2.6114 -0.6622 -3.5092 8 7 2.9244 -1.9392 -3.4500 9 14 2.7892 0.2695 -5.1185 10 1 2.3743 1.6817 -4.9214 11 1 4.2059 0.2266 -5.5614 12 1 1.9281 -0.3594 -6.1521 13 6 2.0399 -0.7211 1.2493 14 1 1.6778 -1.7492 1.2492 15 6 1.5302 -0.0001 2.4992 16 6 2.0125 -0.7396 3.7492 17 6 3.5441 -0.7366 3.7803 18 7 4.0438 -1.2968 2.5172 19 6 4.9187 -2.3220 2.5193 20 8 5.2462 -2.8440 1.4708 21 6 5.4741 -2.8143 3.7926 22 6 5.8859 -2.0420 4.8604 23 7 6.3216 -2.8772 5.8167 24 6 6.8479 -2.4801 7.1249 25 7 6.1943 -4.1908 5.3513 26 6 5.6909 -4.1657 4.1473 27 17 5.3483 -5.5487 3.1555 28 6 3.5762 -0.7143 1.2520 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.2490 -1.6318 -1.1524 33 1 3.2478 -2.3965 -4.2420 34 1 0.4404 0.0206 2.4874 35 1 1.9126 1.0205 2.5108 36 1 1.6512 -1.7677 3.7259 37 1 1.6297 -0.2395 4.6389 38 1 3.8939 -1.3456 4.6138 39 1 3.9053 0.2854 3.8948 40 1 5.8600 -0.9638 4.9169 41 1 7.9257 -2.3337 7.0538 42 1 6.3748 -1.5500 7.4398 43 1 6.6348 -3.2613 7.8547 44 1 3.9399 0.3095 1.1647 45 1 3.9472 -1.3085 0.4170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319829114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:16 Heat of formation + Delta-G solvation = 28.051850 kcal Electronic energy + Delta-G solvation = -27976.793922 eV Core-core repulsion = 24056.383809 eV Total energy + Delta-G solvation = -3920.410112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.64870 -40.84490 -38.89582 -37.88764 -36.88890 -34.65691 -34.21923 -33.09733 -32.13949 -31.03735 -29.68208 -28.02291 -26.56029 -25.77462 -24.41272 -23.39277 -22.28380 -22.06234 -21.01362 -20.29820 -19.10321 -18.27952 -17.68855 -16.94568 -16.80031 -16.60613 -16.15382 -15.95659 -15.55143 -15.51629 -15.25229 -14.85187 -14.62620 -14.27014 -14.17719 -14.05989 -13.94529 -13.67978 -13.55480 -13.34449 -12.98609 -12.80223 -12.71089 -12.65730 -12.49496 -12.30489 -12.07097 -11.97924 -11.88028 -11.75026 -11.62150 -11.31920 -11.14352 -10.96233 -10.86178 -10.47094 -9.85807 -9.48353 -8.94871 -7.88046 -5.16600 0.34913 0.42503 0.78555 1.46338 1.48103 1.57733 1.68175 1.93953 2.25434 2.59046 3.36372 3.45383 3.65410 3.79575 3.89575 3.97892 4.02030 4.16749 4.19205 4.30949 4.37438 4.45726 4.47597 4.50084 4.64957 4.69272 4.74197 4.76931 4.84621 4.90847 4.98658 5.01167 5.08969 5.11477 5.22986 5.33942 5.44012 5.54252 5.60796 5.62748 5.69601 5.74614 6.14793 6.32721 6.52003 7.26656 7.37673 8.16817 8.38103 9.35738 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013854 B = 0.003160 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.569178 B = 8858.048560 C = 9986.351545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.173 3.827 3 H 0.052 0.948 4 N -0.738 5.738 5 C -0.228 4.228 6 H 0.080 0.920 7 C -0.084 4.084 8 N -0.973 5.973 9 Si 0.969 3.031 10 H -0.260 1.260 11 H -0.299 1.299 12 H -0.297 1.297 13 C -0.091 4.091 14 H 0.042 0.958 15 C -0.107 4.107 16 C -0.129 4.129 17 C 0.095 3.905 18 N -0.602 5.602 19 C 0.580 3.420 20 O -0.581 6.581 21 C -0.297 4.297 22 C 0.139 3.861 23 N -0.336 5.336 24 C 0.083 3.917 25 N -0.305 5.305 26 C 0.146 3.854 27 Cl 0.004 6.996 28 C 0.133 3.867 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.082 0.918 32 H 0.367 0.633 33 H 0.246 0.754 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.243 0.757 41 H 0.097 0.903 42 H 0.139 0.861 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.880 6.271 31.060 31.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.065 3.935 3 H 0.070 0.930 4 N -0.378 5.378 5 C -0.360 4.360 6 H 0.097 0.903 7 C -0.275 4.275 8 N -0.624 5.624 9 Si 0.799 3.201 10 H -0.184 1.184 11 H -0.226 1.226 12 H -0.225 1.225 13 C -0.111 4.111 14 H 0.060 0.940 15 C -0.145 4.145 16 C -0.167 4.167 17 C -0.026 4.026 18 N -0.334 5.334 19 C 0.369 3.631 20 O -0.461 6.461 21 C -0.313 4.313 22 C -0.013 4.013 23 N -0.116 5.116 24 C -0.055 4.055 25 N -0.131 5.131 26 C -0.045 4.045 27 Cl 0.031 6.969 28 C 0.010 3.990 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.100 0.900 32 H 0.198 0.802 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.259 0.741 41 H 0.116 0.884 42 H 0.157 0.843 43 H 0.118 0.882 44 H 0.092 0.908 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.505 5.342 31.434 32.202 hybrid contribution -0.057 -0.535 -2.626 2.680 sum 4.448 4.807 28.809 29.544 Atomic orbital electron populations 1.22334 0.97674 1.00345 1.01041 1.20485 0.92814 0.95143 0.85108 0.93002 1.42733 1.78290 1.10164 1.06601 1.19654 1.34028 0.94113 0.88164 0.90251 1.25577 1.03531 0.96799 1.01611 1.69878 1.53028 1.10492 1.29028 0.85118 0.76490 0.78420 0.80058 1.18428 1.22629 1.22491 1.21683 0.93954 0.99232 0.96218 0.93954 1.21609 1.01552 0.99512 0.91834 1.21918 0.94848 1.00764 0.99135 1.22323 0.95039 1.00700 0.84523 1.48072 1.43305 1.33457 1.08525 1.17697 0.78731 0.79224 0.87458 1.90850 1.62190 1.58222 1.34825 1.20017 1.20552 0.91989 0.98775 1.23700 0.92973 0.99294 0.85353 1.48672 1.45831 1.01812 1.15277 1.22660 1.01473 1.04192 0.77169 1.77159 1.24127 1.00911 1.10862 1.22725 1.00148 0.89366 0.92292 1.98423 1.92967 1.39838 1.65633 1.21437 0.94444 0.97862 0.85247 0.94724 0.94929 0.89951 0.80231 0.94495 0.90328 0.89840 0.93474 0.86893 0.88128 0.87801 0.74094 0.88449 0.84291 0.88154 0.90765 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 9.14 71.98 0.66 -4.66 16 2 C 0.17 6.66 2.47 44.99 0.11 6.77 16 3 H 0.05 1.95 8.08 -2.38 -0.02 1.93 16 4 N -0.74 -38.60 4.52 -322.96 -1.46 -40.06 16 5 C -0.23 -12.96 9.93 84.03 0.83 -12.12 16 6 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 7 C -0.08 -5.04 5.50 84.86 0.47 -4.57 16 8 N -0.97 -64.00 13.06 21.65 0.28 -63.72 16 9 Si 0.97 48.35 29.55 68.60 2.03 50.37 16 10 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 12 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 13 C -0.09 -2.92 1.99 -10.57 -0.02 -2.95 16 14 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 15 C -0.11 -2.17 4.85 30.62 0.15 -2.02 16 16 C -0.13 -1.97 6.08 30.67 0.19 -1.78 16 17 C 0.10 1.42 5.48 86.36 0.47 1.90 16 18 N -0.60 -16.88 2.97 -821.99 -2.44 -19.31 16 19 C 0.58 19.89 7.49 86.65 0.65 20.54 16 20 O -0.58 -27.25 16.14 -4.07 -0.07 -27.32 16 21 C -0.30 -7.76 5.21 -20.14 -0.10 -7.87 16 22 C 0.14 1.90 9.11 84.29 0.77 2.67 16 23 N -0.34 -4.55 3.98 -367.78 -1.46 -6.01 16 24 C 0.08 0.13 11.44 127.77 1.46 1.59 16 25 N -0.30 -7.28 12.50 -48.95 -0.61 -7.89 16 26 C 0.15 4.22 7.88 85.66 0.67 4.90 16 27 Cl 0.00 0.12 28.84 -2.72 -0.08 0.04 16 28 C 0.13 4.68 5.51 86.51 0.48 5.15 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 2.11 6.40 -2.39 -0.02 2.09 16 32 H 0.37 21.65 7.64 -92.71 -0.71 20.95 16 33 H 0.25 15.81 8.31 -92.70 -0.77 15.04 16 34 H 0.08 1.48 6.36 -2.39 -0.02 1.46 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.11 0.89 8.14 -2.39 -0.02 0.88 16 38 H 0.10 1.12 4.81 -2.39 -0.01 1.11 16 39 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.24 0.70 7.35 -2.91 -0.02 0.67 16 41 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.14 -0.88 8.14 -2.39 -0.02 -0.90 16 43 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.05 2.29 6.53 -2.39 -0.02 2.28 16 Total: -1.00 -89.95 377.83 3.28 -86.67 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.31 Total: 19.67 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 6.78 Total: 7.55 kcal Atomic # 7 Polarization: -131.30 SS G_CDS: -5.69 Total: -136.99 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.07 Total: -27.32 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.37 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -0.08 Total: 0.04 kcal Total: -89.95 3.28 -86.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319829114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.720 kcal (2) G-P(sol) polarization free energy of solvation -89.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds