Wall clock time and date at job start Sat Apr 11 2020 06:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 N 1.46903 * 109.46973 * 174.99783 * 4 2 1 6 6 C 1.46896 * 111.00028 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47190 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99912 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99930 * 179.97438 * 7 6 5 10 10 C 1.37099 * 119.99971 * 179.97438 * 9 7 6 11 11 H 1.07997 * 119.99994 * 0.02562 * 10 9 7 12 12 C 1.38956 * 120.00034 * 180.02562 * 10 9 7 13 13 N 1.31418 * 119.99940 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99992 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47066 * 89.99970 * 14 12 10 16 16 H 1.48500 * 109.46977 * 210.00051 * 14 12 10 17 17 H 1.48495 * 109.47230 * 329.99625 * 14 12 10 18 18 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 19 19 C 1.34777 * 119.99828 * 84.72116 * 18 2 1 20 20 O 1.21283 * 120.00222 * 0.28168 * 19 18 2 21 21 C 1.50703 * 120.00290 * 180.27728 * 19 18 2 22 22 N 1.46492 * 109.47441 * 180.02562 * 21 19 18 23 23 C 1.33876 * 122.76146 * 269.71084 * 22 21 19 24 24 O 1.21226 * 125.39833 * 359.97438 * 23 22 21 25 25 C 1.51316 * 109.20807 * 179.84322 * 23 22 21 26 26 C 1.54229 * 103.55173 * 0.38473 * 25 23 22 27 27 C 1.33879 * 122.76450 * 90.00117 * 22 21 19 28 28 O 1.21226 * 125.39314 * 359.97438 * 27 22 21 29 29 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 30 30 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 31 31 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47038 * 294.99798 * 4 2 1 33 33 H 1.08999 * 109.47047 * 55.00424 * 4 2 1 34 34 H 1.00906 * 110.99926 * 56.04584 * 5 4 2 35 35 H 1.09001 * 109.46867 * 300.00094 * 6 5 4 36 36 H 1.08992 * 109.47029 * 60.00008 * 6 5 4 37 37 H 0.97002 * 120.00702 * 359.97438 * 9 7 6 38 38 H 0.96998 * 119.99422 * 180.02562 * 13 12 10 39 39 H 0.97001 * 120.00384 * 265.00562 * 18 2 1 40 40 H 1.08998 * 109.46954 * 300.00581 * 21 19 18 41 41 H 1.09002 * 109.46946 * 59.99717 * 21 19 18 42 42 H 1.09001 * 110.79630 * 241.77753 * 25 23 22 43 43 H 1.08995 * 110.41699 * 118.80996 * 25 23 22 44 44 H 1.09004 * 110.60531 * 241.26208 * 26 25 23 45 45 H 1.09003 * 110.60704 * 118.29726 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5041 -0.8267 1.1904 6 6 4.0303 -1.5160 2.3761 7 6 5.5317 -1.6045 2.2806 8 8 6.1067 -1.1387 1.3196 9 7 6.2354 -2.2002 3.2635 10 6 7.6012 -2.2811 3.1764 11 1 8.1132 -1.8672 2.3204 12 6 8.3268 -2.8958 4.1896 13 7 9.6360 -2.9739 4.1059 14 14 7.4412 -3.6125 5.6700 15 1 7.0920 -5.0303 5.3994 16 1 8.3267 -3.5392 6.8598 17 1 6.2009 -2.8377 5.9277 18 7 2.0184 -0.6906 -1.1962 19 6 2.1417 -0.0196 -2.3585 20 8 1.8533 1.1572 -2.4129 21 6 2.6382 -0.7314 -3.5905 22 7 2.6829 0.2088 -4.7131 23 6 1.6483 0.3980 -5.5413 24 8 0.5783 -0.1673 -5.4689 25 6 2.0247 1.4318 -6.5801 26 6 3.4752 1.8038 -6.2107 27 6 3.7638 0.9453 -4.9986 28 8 4.8081 0.9276 -4.3832 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2951 34 1 3.9280 0.0825 1.0823 35 1 3.7558 -0.9589 3.2718 36 1 3.6095 -2.5200 2.4293 37 1 5.7757 -2.5717 4.0327 38 1 10.1424 -3.4033 4.8130 39 1 2.2490 -1.6318 -1.1527 40 1 3.6381 -1.1236 -3.4054 41 1 1.9643 -1.5536 -3.8314 42 1 1.3753 2.3044 -6.5108 43 1 1.9824 0.9992 -7.5797 44 1 3.5473 2.8616 -5.9575 45 1 4.1544 1.5564 -7.0265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322068969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:19 Heat of formation + Delta-G solvation = -124.344621 kcal Electronic energy + Delta-G solvation = -29302.261876 eV Core-core repulsion = 24934.534192 eV Total energy + Delta-G solvation = -4367.727684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.20983 -39.76660 -38.80926 -38.50252 -36.81868 -36.04429 -34.39142 -33.81054 -33.73029 -31.68828 -31.31022 -28.06445 -27.79329 -26.50219 -25.06001 -23.21301 -22.68733 -22.07937 -20.77731 -19.74407 -19.38507 -18.39895 -17.99596 -17.65078 -16.77192 -16.70560 -16.57340 -15.86280 -15.31103 -15.25823 -14.98552 -14.82311 -14.46929 -14.40895 -14.33349 -14.19741 -14.03031 -13.67223 -13.38235 -13.22141 -13.11853 -12.85854 -12.70080 -12.32752 -12.25486 -12.10967 -11.76092 -11.74995 -11.72480 -11.17688 -11.05374 -10.96394 -10.68374 -10.61207 -10.32196 -9.98666 -9.71810 -9.58613 -9.17811 -8.63003 -8.24618 -8.18356 -6.31987 -3.83557 1.25834 2.02122 2.42171 2.47441 3.00709 3.05182 3.12696 3.13654 3.72096 3.72798 3.86799 3.98174 4.06269 4.09061 4.43721 4.55024 4.69072 4.73171 4.80697 4.95181 4.97807 5.05039 5.07983 5.16475 5.20055 5.21837 5.24359 5.34351 5.47880 5.48906 5.58141 5.75866 5.81857 5.89056 5.98389 6.36908 6.48392 6.98375 7.02559 7.34784 7.46459 7.50103 7.56857 8.07219 8.13589 8.58503 8.94096 9.41205 9.81329 10.81143 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015746 B = 0.002260 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.819526 B =12387.136416 C =13758.853595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.087 0.913 4 C 0.048 3.952 5 N -0.667 5.667 6 C 0.048 3.952 7 C 0.448 3.552 8 O -0.562 6.562 9 N -0.591 5.591 10 C -0.305 4.305 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.881 3.119 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.701 5.701 19 C 0.508 3.492 20 O -0.541 6.541 21 C 0.077 3.923 22 N -0.558 5.558 23 C 0.532 3.468 24 O -0.485 6.485 25 C -0.154 4.154 26 C -0.154 4.154 27 C 0.527 3.473 28 O -0.468 6.468 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.353 0.647 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.408 0.592 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.869 5.298 -16.273 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.105 0.895 4 C -0.082 4.082 5 N -0.300 5.300 6 C -0.085 4.085 7 C 0.234 3.766 8 O -0.444 6.444 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.353 5.353 19 C 0.292 3.708 20 O -0.418 6.418 21 C -0.048 4.048 22 N -0.301 5.301 23 C 0.322 3.678 24 O -0.357 6.357 25 C -0.193 4.193 26 C -0.194 4.194 27 C 0.315 3.685 28 O -0.338 6.338 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.173 0.827 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.243 0.757 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.459 5.498 -16.848 27.068 hybrid contribution -0.497 -0.514 2.252 2.362 sum -20.956 4.984 -14.597 26.020 Atomic orbital electron populations 1.22135 0.94808 1.02340 1.02679 1.20958 0.93656 0.97509 0.83754 0.89532 1.22319 0.89424 1.00774 0.95681 1.60054 1.03119 1.27116 1.39741 1.21711 0.95114 1.00014 0.91634 1.19699 0.87931 0.84181 0.84793 1.90589 1.70960 1.50277 1.32556 1.42205 1.07878 1.53117 1.19820 1.19436 0.79558 1.35961 1.08416 0.86280 1.25051 0.95449 0.97673 0.98046 1.69627 1.05074 1.43253 1.34128 0.86660 0.79595 0.79989 0.83046 1.19603 1.20190 1.19579 1.45695 1.66457 1.14558 1.08582 1.20588 0.77684 0.87593 0.84903 1.90694 1.50229 1.15757 1.85142 1.21585 1.06282 0.92300 0.84637 1.46303 1.16428 1.39586 1.27793 1.20816 0.82598 0.82343 0.82086 1.90770 1.22477 1.49882 1.72533 1.22446 0.97238 0.99793 0.99869 1.22454 0.97266 1.02489 0.97157 1.20856 0.82342 0.79517 0.85757 1.90862 1.25542 1.63626 1.53748 0.91529 0.91896 0.92195 0.93751 0.90308 0.82721 0.93716 0.89429 0.79723 0.91606 0.75710 0.85332 0.85959 0.86020 0.86138 0.85976 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.09 16 2 C 0.15 1.57 2.81 -67.93 -0.19 1.38 16 3 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 4 C 0.05 0.50 5.24 -3.82 -0.02 0.48 16 5 N -0.67 -9.65 5.85 -115.06 -0.67 -10.33 16 6 C 0.05 0.75 6.17 -4.98 -0.03 0.72 16 7 C 0.45 10.04 7.82 -10.99 -0.09 9.96 16 8 O -0.56 -15.11 15.78 5.55 0.09 -15.03 16 9 N -0.59 -13.97 5.09 -10.96 -0.06 -14.02 16 10 C -0.30 -8.64 10.16 -14.93 -0.15 -8.80 16 11 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 12 C 0.04 1.12 5.50 -17.46 -0.10 1.02 16 13 N -0.88 -25.81 13.96 55.50 0.77 -25.03 16 14 Si 0.88 19.29 27.74 -169.99 -4.71 14.57 16 15 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.27 -5.37 6.52 56.52 0.37 -5.01 16 18 N -0.70 -7.72 4.80 -53.81 -0.26 -7.98 16 19 C 0.51 6.56 7.86 -10.98 -0.09 6.47 16 20 O -0.54 -8.77 16.10 5.55 0.09 -8.68 16 21 C 0.08 0.80 6.04 -5.20 -0.03 0.77 16 22 N -0.56 -5.84 2.04 -116.63 -0.24 -6.08 16 23 C 0.53 5.06 8.08 -11.08 -0.09 4.97 16 24 O -0.48 -6.06 17.47 5.60 0.10 -5.96 16 25 C -0.15 -0.72 7.03 -26.94 -0.19 -0.91 16 26 C -0.15 -0.80 7.03 -26.94 -0.19 -0.99 16 27 C 0.53 5.63 8.08 -11.09 -0.09 5.54 16 28 O -0.47 -7.08 17.48 5.60 0.10 -6.98 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.35 5.74 8.43 -39.29 -0.33 5.41 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.41 3.84 8.60 -40.82 -0.35 3.49 16 40 H 0.13 1.30 7.83 -51.93 -0.41 0.89 16 41 H 0.12 0.98 7.82 -51.93 -0.41 0.58 16 42 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 389.60 15.07 5.87 5.87 Total: -1.00 -39.55 389.60 -6.15 -45.70 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -6.33 Total: 14.43 kcal Atomic # 6 Polarization: 20.42 SS G_CDS: -0.90 Total: 19.52 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -0.45 Total: -63.44 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: 0.37 Total: -36.65 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.55 -6.15 -45.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322068969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.646 kcal (2) G-P(sol) polarization free energy of solvation -39.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds