Wall clock time and date at job start Sat Apr 11 2020 06:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 N 1.46903 * 109.46973 * 174.99783 * 4 2 1 6 6 C 1.46896 * 111.00028 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47190 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99912 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99930 * 179.97438 * 7 6 5 10 10 C 1.37099 * 119.99971 * 179.97438 * 9 7 6 11 11 H 1.07997 * 119.99994 * 0.02562 * 10 9 7 12 12 C 1.38956 * 120.00034 * 180.02562 * 10 9 7 13 13 N 1.31418 * 119.99940 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99992 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47066 * 89.99970 * 14 12 10 16 16 H 1.48500 * 109.46977 * 210.00051 * 14 12 10 17 17 H 1.48495 * 109.47230 * 329.99625 * 14 12 10 18 18 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 19 19 C 1.34777 * 119.99828 * 84.72116 * 18 2 1 20 20 O 1.21283 * 120.00222 * 0.28168 * 19 18 2 21 21 C 1.50703 * 120.00290 * 180.27728 * 19 18 2 22 22 N 1.46492 * 109.47441 * 180.02562 * 21 19 18 23 23 C 1.33876 * 122.76146 * 269.71084 * 22 21 19 24 24 O 1.21226 * 125.39833 * 359.97438 * 23 22 21 25 25 C 1.51316 * 109.20807 * 179.84322 * 23 22 21 26 26 C 1.54229 * 103.55173 * 0.38473 * 25 23 22 27 27 C 1.33879 * 122.76450 * 90.00117 * 22 21 19 28 28 O 1.21226 * 125.39314 * 359.97438 * 27 22 21 29 29 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 30 30 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 31 31 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47038 * 294.99798 * 4 2 1 33 33 H 1.08999 * 109.47047 * 55.00424 * 4 2 1 34 34 H 1.00906 * 110.99926 * 56.04584 * 5 4 2 35 35 H 1.09001 * 109.46867 * 300.00094 * 6 5 4 36 36 H 1.08992 * 109.47029 * 60.00008 * 6 5 4 37 37 H 0.97002 * 120.00702 * 359.97438 * 9 7 6 38 38 H 0.96998 * 119.99422 * 180.02562 * 13 12 10 39 39 H 0.97001 * 120.00384 * 265.00562 * 18 2 1 40 40 H 1.08998 * 109.46954 * 300.00581 * 21 19 18 41 41 H 1.09002 * 109.46946 * 59.99717 * 21 19 18 42 42 H 1.09001 * 110.79630 * 241.77753 * 25 23 22 43 43 H 1.08995 * 110.41699 * 118.80996 * 25 23 22 44 44 H 1.09004 * 110.60531 * 241.26208 * 26 25 23 45 45 H 1.09003 * 110.60704 * 118.29726 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5041 -0.8267 1.1904 6 6 4.0303 -1.5160 2.3761 7 6 5.5317 -1.6045 2.2806 8 8 6.1067 -1.1387 1.3196 9 7 6.2354 -2.2002 3.2635 10 6 7.6012 -2.2811 3.1764 11 1 8.1132 -1.8672 2.3204 12 6 8.3268 -2.8958 4.1896 13 7 9.6360 -2.9739 4.1059 14 14 7.4412 -3.6125 5.6700 15 1 7.0920 -5.0303 5.3994 16 1 8.3267 -3.5392 6.8598 17 1 6.2009 -2.8377 5.9277 18 7 2.0184 -0.6906 -1.1962 19 6 2.1417 -0.0196 -2.3585 20 8 1.8533 1.1572 -2.4129 21 6 2.6382 -0.7314 -3.5905 22 7 2.6829 0.2088 -4.7131 23 6 1.6483 0.3980 -5.5413 24 8 0.5783 -0.1673 -5.4689 25 6 2.0247 1.4318 -6.5801 26 6 3.4752 1.8038 -6.2107 27 6 3.7638 0.9453 -4.9986 28 8 4.8081 0.9276 -4.3832 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2951 34 1 3.9280 0.0825 1.0823 35 1 3.7558 -0.9589 3.2718 36 1 3.6095 -2.5200 2.4293 37 1 5.7757 -2.5717 4.0327 38 1 10.1424 -3.4033 4.8130 39 1 2.2490 -1.6318 -1.1527 40 1 3.6381 -1.1236 -3.4054 41 1 1.9643 -1.5536 -3.8314 42 1 1.3753 2.3044 -6.5108 43 1 1.9824 0.9992 -7.5797 44 1 3.5473 2.8616 -5.9575 45 1 4.1544 1.5564 -7.0265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322068969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:19 Heat of formation + Delta-G solvation = -159.360595 kcal Electronic energy + Delta-G solvation = -29303.780282 eV Core-core repulsion = 24934.534192 eV Total energy + Delta-G solvation = -4369.246091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.97952 -40.76877 -40.26405 -39.68978 -37.90000 -36.92643 -36.08911 -35.20342 -34.45336 -33.75249 -32.23656 -29.14789 -28.81967 -27.12921 -26.64674 -24.56692 -23.34427 -22.96130 -21.73406 -21.27545 -20.55187 -20.25246 -18.90441 -18.52916 -17.86803 -17.57965 -17.52228 -17.25777 -16.73236 -16.42754 -16.22801 -15.77083 -15.72443 -15.42462 -15.31000 -15.12017 -14.94007 -14.86944 -14.69783 -14.35450 -14.31132 -14.08289 -13.68373 -13.53965 -13.20703 -13.15612 -13.03645 -12.83342 -12.74716 -12.42100 -12.12361 -11.99213 -11.90917 -11.78858 -11.64240 -11.52101 -11.14079 -10.69601 -10.46436 -10.25926 -10.12474 -9.38095 -8.42155 -6.03541 0.48315 1.27195 1.29365 1.35553 1.44396 1.46275 1.68855 1.95553 2.22567 2.26345 2.69588 3.13993 3.19570 3.24799 3.35455 3.62206 3.64559 3.79104 3.95611 4.09731 4.10324 4.18800 4.19438 4.26378 4.32923 4.45840 4.55394 4.62417 4.73250 4.73820 4.74313 4.89140 4.90664 4.99379 5.22830 5.46435 5.51659 5.73810 5.87714 6.01042 6.24655 6.27824 6.42963 6.58753 6.69522 6.87474 7.11872 7.38970 7.96627 8.75737 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015746 B = 0.002260 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.819526 B =12387.136416 C =13758.853595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.145 3.855 3 H 0.059 0.941 4 C 0.056 3.944 5 N -0.685 5.685 6 C 0.064 3.936 7 C 0.446 3.554 8 O -0.617 6.617 9 N -0.590 5.590 10 C -0.330 4.330 11 H 0.052 0.948 12 C -0.018 4.018 13 N -0.936 5.936 14 Si 0.968 3.032 15 H -0.255 1.255 16 H -0.276 1.276 17 H -0.230 1.230 18 N -0.694 5.694 19 C 0.500 3.500 20 O -0.581 6.581 21 C 0.072 3.928 22 N -0.566 5.566 23 C 0.524 3.476 24 O -0.520 6.520 25 C -0.138 4.138 26 C -0.141 4.141 27 C 0.516 3.484 28 O -0.527 6.527 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.338 0.662 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.391 0.609 38 H 0.279 0.721 39 H 0.416 0.584 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.156 0.844 44 H 0.137 0.863 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.402 4.491 -15.336 29.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 H 0.077 0.923 4 C -0.073 4.073 5 N -0.316 5.316 6 C -0.068 4.068 7 C 0.234 3.766 8 O -0.501 6.501 9 N -0.232 5.232 10 C -0.459 4.459 11 H 0.070 0.930 12 C -0.216 4.216 13 N -0.576 5.576 14 Si 0.788 3.212 15 H -0.180 1.180 16 H -0.202 1.202 17 H -0.153 1.153 18 N -0.345 5.345 19 C 0.285 3.715 20 O -0.461 6.461 21 C -0.053 4.053 22 N -0.308 5.308 23 C 0.316 3.684 24 O -0.394 6.394 25 C -0.177 4.177 26 C -0.180 4.180 27 C 0.308 3.692 28 O -0.401 6.401 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.156 0.844 35 H 0.095 0.905 36 H 0.141 0.859 37 H 0.226 0.774 38 H 0.089 0.911 39 H 0.253 0.747 40 H 0.143 0.857 41 H 0.162 0.838 42 H 0.159 0.841 43 H 0.174 0.826 44 H 0.155 0.845 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -24.049 4.672 -15.919 29.217 hybrid contribution 0.637 -0.220 1.859 1.977 sum -23.413 4.452 -14.060 27.670 Atomic orbital electron populations 1.22038 0.93006 1.03396 1.02448 1.21014 0.94930 0.96186 0.83909 0.92314 1.22383 0.86577 1.02444 0.95863 1.60059 1.05542 1.26350 1.39695 1.21646 0.89199 1.02660 0.93333 1.21098 0.90960 0.81502 0.83063 1.90573 1.73035 1.51875 1.34628 1.42021 1.06064 1.53986 1.21170 1.18992 0.82061 1.37471 1.07364 0.93024 1.26179 0.96220 0.97297 1.01913 1.69819 1.07590 1.44345 1.35887 0.85320 0.79400 0.79766 0.76720 1.17979 1.20154 1.15289 1.45730 1.65578 1.14893 1.08327 1.21035 0.77196 0.87287 0.85969 1.90658 1.52206 1.17400 1.85872 1.21656 1.06409 0.92945 0.84270 1.46596 1.17039 1.39451 1.27720 1.21730 0.81651 0.82544 0.82434 1.90746 1.23673 1.51460 1.73568 1.22590 0.96624 0.98821 0.99635 1.22600 0.98243 1.01960 0.95152 1.21909 0.81319 0.79326 0.86620 1.90827 1.27650 1.65523 1.56059 0.89746 0.94137 0.90408 0.91642 0.87751 0.84412 0.90454 0.85932 0.77374 0.91145 0.74712 0.85694 0.83821 0.84102 0.82632 0.84479 0.82904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.48 71.98 0.68 -1.75 16 2 C 0.14 2.96 2.81 44.99 0.13 3.09 16 3 H 0.06 1.55 7.58 -2.39 -0.02 1.53 16 4 C 0.06 0.99 5.24 86.30 0.45 1.44 16 5 N -0.68 -18.70 5.85 -517.94 -3.03 -21.73 16 6 C 0.06 1.79 6.17 85.56 0.53 2.32 16 7 C 0.45 19.89 7.82 87.66 0.69 20.57 16 8 O -0.62 -34.69 15.78 -3.06 -0.05 -34.73 16 9 N -0.59 -27.62 5.09 -306.99 -1.56 -29.18 16 10 C -0.33 -19.47 10.16 84.04 0.85 -18.61 16 11 H 0.05 3.67 7.39 -2.91 -0.02 3.64 16 12 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 13 N -0.94 -56.93 13.96 21.67 0.30 -56.63 16 14 Si 0.97 38.52 27.74 68.60 1.90 40.42 16 15 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 16 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 17 H -0.23 -7.57 6.52 99.48 0.65 -6.93 16 18 N -0.69 -15.28 4.80 -442.53 -2.12 -17.41 16 19 C 0.50 13.49 7.86 87.66 0.69 14.18 16 20 O -0.58 -19.83 16.10 -3.04 -0.05 -19.88 16 21 C 0.07 1.59 6.04 85.64 0.52 2.11 16 22 N -0.57 -12.13 2.04 -760.74 -1.55 -13.69 16 23 C 0.52 9.64 8.08 87.99 0.71 10.35 16 24 O -0.52 -12.90 17.47 -2.86 -0.05 -12.95 16 25 C -0.14 -0.91 7.03 30.46 0.21 -0.70 16 26 C -0.14 -1.18 7.03 30.46 0.21 -0.97 16 27 C 0.52 11.31 8.08 87.99 0.71 12.02 16 28 O -0.53 -17.02 17.48 -2.86 -0.05 -17.07 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.34 11.03 8.43 -89.69 -0.76 10.28 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.39 14.87 5.76 -92.71 -0.53 14.33 16 38 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.42 7.59 8.60 -92.71 -0.80 6.79 16 40 H 0.13 2.77 7.83 -2.39 -0.02 2.76 16 41 H 0.14 2.39 7.82 -2.39 -0.02 2.37 16 42 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.16 0.03 8.14 -2.39 -0.02 0.01 16 44 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -97.22 389.60 -0.50 -97.72 By element: Atomic # 1 Polarization: 42.68 SS G_CDS: -1.09 Total: 41.59 kcal Atomic # 6 Polarization: 36.70 SS G_CDS: 6.85 Total: 43.55 kcal Atomic # 7 Polarization: -130.67 SS G_CDS: -7.97 Total: -138.63 kcal Atomic # 8 Polarization: -84.44 SS G_CDS: -0.20 Total: -84.64 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -97.22 -0.50 -97.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322068969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.645 kcal (2) G-P(sol) polarization free energy of solvation -97.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds