Wall clock time and date at job start Sat Apr 11 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.46657 * 2 1 4 4 C 1.50698 * 109.47432 * 119.99875 * 2 1 3 5 5 N 1.31071 * 126.66252 * 75.02565 * 4 2 1 6 6 N 1.28835 * 107.99286 * 179.97438 * 5 4 2 7 7 N 1.28742 * 109.39953 * 0.02562 * 6 5 4 8 8 N 1.29019 * 108.80459 * 359.74235 * 7 6 5 9 9 C 1.46509 * 126.43696 * 180.24710 * 8 7 6 10 10 N 1.46904 * 109.47323 * 240.00269 * 2 1 3 11 11 C 1.48303 * 111.10201 * 322.62450 * 10 2 1 12 12 C 1.53936 * 86.18340 * 137.54407 * 11 10 2 13 13 C 1.47961 * 110.99749 * 61.87334 * 10 2 1 14 14 H 1.09000 * 113.76074 * 336.73740 * 13 10 2 15 15 C 1.53000 * 113.75610 * 107.99289 * 13 10 2 16 16 N 1.46500 * 109.47349 * 303.01974 * 15 13 10 17 17 C 1.34769 * 119.99890 * 180.02562 * 16 15 13 18 18 O 1.21283 * 120.00534 * 359.97438 * 17 16 15 19 19 C 1.50707 * 119.99882 * 179.97438 * 17 16 15 20 20 S 1.81003 * 109.47126 * 179.97438 * 19 17 16 21 21 C 1.76200 * 99.99793 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99935 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99951 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99917 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99852 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47101 * 89.99958 * 25 23 21 27 27 H 1.48501 * 109.46767 * 210.00209 * 25 23 21 28 28 H 1.48493 * 109.47204 * 329.99861 * 25 23 21 29 29 H 1.09004 * 109.46541 * 189.85316 * 1 2 3 30 30 H 1.09003 * 109.47053 * 309.84611 * 1 2 3 31 31 H 1.08995 * 109.47420 * 69.85436 * 1 2 3 32 32 H 1.08995 * 109.46845 * 270.17971 * 9 8 7 33 33 H 1.09002 * 109.46793 * 30.18195 * 9 8 7 34 34 H 1.09002 * 109.46823 * 150.17824 * 9 8 7 35 35 H 1.08999 * 113.76592 * 23.22528 * 11 10 2 36 36 H 1.09003 * 113.75547 * 251.86026 * 11 10 2 37 37 H 1.08991 * 113.73749 * 221.92182 * 12 11 10 38 38 H 1.08999 * 113.83025 * 90.64532 * 12 11 10 39 39 H 1.09005 * 109.47076 * 63.01759 * 15 13 10 40 40 H 1.09001 * 109.46843 * 183.01218 * 15 13 10 41 41 H 0.96996 * 119.99594 * 0.02562 * 16 15 13 42 42 H 1.08995 * 109.47363 * 300.00192 * 19 17 16 43 43 H 1.09007 * 109.46621 * 60.00352 * 19 17 16 44 44 H 0.97001 * 119.99337 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.0372 -2.0042 1.4400 6 7 2.5451 -2.2168 2.6048 7 7 2.8640 -1.0920 3.1440 8 7 2.5681 -0.1397 2.3255 9 6 2.7736 1.2938 2.5475 10 7 2.0198 -0.6924 -1.1995 11 6 1.1612 -1.8548 -1.5330 12 6 1.2852 -1.3956 -2.9970 13 6 1.5825 0.0042 -2.4295 14 1 0.6940 0.6205 -2.2929 15 6 2.7113 0.7373 -3.1569 16 7 3.3383 1.6967 -2.2444 17 6 4.3630 2.4613 -2.6705 18 8 4.7666 2.3549 -3.8092 19 6 5.0076 3.4487 -1.7319 20 16 6.3430 4.3159 -2.5925 21 6 6.9038 5.3738 -1.2998 22 1 6.4276 5.3417 -0.3310 23 6 7.9574 6.2484 -1.5267 24 7 8.3766 7.0383 -0.5608 25 14 8.7814 6.3034 -3.2022 26 1 8.0938 7.3022 -4.0595 27 1 10.2067 6.6874 -3.0404 28 1 8.6987 4.9643 -3.8387 29 1 -0.3632 -1.0126 0.1759 30 1 -0.3633 0.6585 0.7890 31 1 -0.3634 0.3539 -0.9647 32 1 1.8900 1.7179 3.0243 33 1 3.6403 1.4411 3.1919 34 1 2.9435 1.7888 1.5913 35 1 0.1493 -1.7822 -1.1342 36 1 1.6299 -2.8185 -1.3338 37 1 0.3511 -1.4531 -3.5555 38 1 2.1261 -1.8411 -3.5285 39 1 3.4560 0.0156 -3.4930 40 1 2.3045 1.2673 -4.0181 41 1 3.0158 1.7816 -1.3336 42 1 4.2628 4.1700 -1.3959 43 1 5.4147 2.9187 -0.8707 44 1 9.1127 7.6498 -0.7195 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323183414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:26 Heat of formation + Delta-G solvation = 100.365022 kcal Electronic energy + Delta-G solvation = -27462.847854 eV Core-core repulsion = 23579.909934 eV Total energy + Delta-G solvation = -3882.937921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.24114 -41.71114 -40.34324 -36.73105 -35.88674 -35.04606 -34.65757 -32.22092 -31.47996 -29.30149 -28.82352 -28.45392 -27.80730 -25.62966 -24.46180 -24.02459 -22.25213 -21.85163 -20.24415 -19.71892 -18.52677 -18.31619 -17.99366 -17.70143 -17.32336 -17.04198 -16.68487 -16.48184 -15.70869 -15.62981 -15.19666 -15.03318 -14.92200 -14.68427 -14.59250 -14.24371 -14.05960 -13.77944 -13.40599 -13.33962 -13.19984 -13.17593 -12.99964 -12.79108 -12.66171 -12.39184 -12.19728 -12.00035 -11.92023 -11.88518 -11.83602 -11.69175 -11.16164 -11.12701 -10.95360 -10.50687 -10.09545 -9.77754 -8.97870 -8.50976 -6.20782 0.18107 1.00471 1.04992 1.15019 1.31421 1.47779 1.56572 1.60823 2.19413 2.25832 2.66463 2.75371 2.87957 2.89601 3.23469 3.56560 3.63204 3.71028 3.92683 3.94766 4.06044 4.15414 4.20260 4.22283 4.24720 4.31577 4.35806 4.46110 4.51313 4.53508 4.67733 4.76164 4.81595 4.93079 4.96720 5.06236 5.08151 5.16493 5.25847 5.33734 5.46583 5.71615 5.95568 6.12361 6.46386 6.95245 7.21841 7.52104 8.61042 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.002914 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.471438 B = 9606.005592 C =11226.925825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.128 3.872 3 H 0.123 0.877 4 C 0.202 3.798 5 N -0.314 5.314 6 N -0.115 5.115 7 N -0.114 5.114 8 N -0.298 5.298 9 C 0.057 3.943 10 N -0.486 5.486 11 C 0.003 3.997 12 C -0.127 4.127 13 C 0.028 3.972 14 H 0.126 0.874 15 C 0.139 3.861 16 N -0.705 5.705 17 C 0.532 3.468 18 O -0.563 6.563 19 C -0.110 4.110 20 S -0.181 6.181 21 C -0.525 4.525 22 H 0.067 0.933 23 C 0.047 3.953 24 N -0.917 5.917 25 Si 0.910 3.090 26 H -0.261 1.261 27 H -0.262 1.262 28 H -0.238 1.238 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.408 0.592 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.444 -13.450 0.978 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.016 3.984 3 H 0.141 0.859 4 C -0.077 4.077 5 N -0.164 5.164 6 N -0.109 5.109 7 N -0.101 5.101 8 N -0.100 5.100 9 C -0.082 4.082 10 N -0.210 5.210 11 C -0.125 4.125 12 C -0.165 4.165 13 C -0.081 4.081 14 H 0.143 0.857 15 C 0.015 3.985 16 N -0.358 5.358 17 C 0.318 3.682 18 O -0.442 6.442 19 C -0.261 4.261 20 S 0.046 5.954 21 C -0.673 4.673 22 H 0.085 0.915 23 C -0.158 4.158 24 N -0.555 5.555 25 Si 0.732 3.268 26 H -0.186 1.186 27 H -0.187 1.187 28 H -0.162 1.162 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.147 0.853 33 H 0.131 0.869 34 H 0.147 0.853 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.244 0.756 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.683 -14.745 0.113 26.222 hybrid contribution -0.363 1.453 1.365 2.026 sum -22.046 -13.292 1.477 25.786 Atomic orbital electron populations 1.22550 0.91823 1.04047 1.05641 1.20824 0.96004 0.97025 0.84573 0.85915 1.26218 0.98550 0.89859 0.93090 1.74851 1.18602 1.13343 1.09579 1.78591 1.13152 1.16553 1.02574 1.78821 1.19559 0.92741 1.18959 1.48725 1.38583 1.11529 1.11153 1.23013 1.07467 0.70064 1.07650 1.68831 1.46768 1.05957 0.99471 1.24156 0.98071 0.95217 0.95063 1.23310 1.03885 0.92841 0.96463 1.23951 0.96928 0.96846 0.90373 0.85676 1.21397 0.94285 0.90395 0.92422 1.45593 1.34218 1.39475 1.16538 1.19985 0.79912 0.80913 0.87427 1.90703 1.63447 1.68853 1.21163 1.23270 1.00844 1.00390 1.01628 1.84837 1.41028 1.48312 1.21243 1.22456 1.21599 1.24226 0.98994 0.91529 1.25508 0.96194 0.93715 1.00422 1.70008 1.27901 1.23461 1.34093 0.85923 0.79112 0.81316 0.80403 1.18596 1.18676 1.16230 0.91233 0.89837 0.87803 0.85334 0.86875 0.85307 0.87808 0.90733 0.87717 0.89780 0.92787 0.90339 0.75578 0.86161 0.87181 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 7.82 71.98 0.56 -0.27 16 2 C 0.13 1.21 2.65 44.17 0.12 1.33 16 3 H 0.12 0.57 5.10 -2.38 -0.01 0.56 16 4 C 0.20 3.53 6.89 138.13 0.95 4.48 16 5 N -0.31 -7.77 11.82 -50.45 -0.60 -8.36 16 6 N -0.11 -3.30 13.43 37.01 0.50 -2.80 16 7 N -0.11 -2.85 13.29 37.02 0.49 -2.36 16 8 N -0.30 -5.08 3.75 -359.63 -1.35 -6.42 16 9 C 0.06 0.38 11.21 127.77 1.43 1.82 16 10 N -0.49 -6.13 5.81 -859.50 -5.00 -11.13 16 11 C 0.00 0.03 7.10 86.34 0.61 0.64 16 12 C -0.13 -1.05 7.84 31.24 0.25 -0.80 16 13 C 0.03 0.25 3.20 45.02 0.14 0.39 16 14 H 0.13 0.38 5.96 -2.39 -0.01 0.37 16 15 C 0.14 2.30 5.83 86.38 0.50 2.80 16 16 N -0.70 -13.74 5.48 -463.05 -2.54 -16.28 16 17 C 0.53 16.53 7.85 87.66 0.69 17.22 16 18 O -0.56 -22.75 15.86 -3.04 -0.05 -22.80 16 19 C -0.11 -3.74 6.16 71.24 0.44 -3.30 16 20 S -0.18 -8.74 18.55 -56.49 -1.05 -9.79 16 21 C -0.53 -29.27 10.04 67.95 0.68 -28.59 16 22 H 0.07 3.86 8.03 -2.91 -0.02 3.83 16 23 C 0.05 2.69 5.50 84.86 0.47 3.15 16 24 N -0.92 -54.38 13.97 21.65 0.30 -54.08 16 25 Si 0.91 44.05 27.74 68.60 1.90 45.95 16 26 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 27 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 28 H -0.24 -11.58 6.74 99.48 0.67 -10.91 16 29 H 0.07 0.52 6.37 -2.38 -0.02 0.50 16 30 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.10 0.05 5.93 -2.39 -0.01 0.03 16 32 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.13 0.25 7.00 -2.39 -0.02 0.24 16 35 H 0.10 0.79 5.01 -2.39 -0.01 0.77 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.08 0.95 7.92 -2.39 -0.02 0.93 16 39 H 0.05 1.16 7.88 -2.38 -0.02 1.14 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.41 5.22 6.42 -92.71 -0.60 4.62 16 42 H 0.12 3.49 8.14 -2.40 -0.02 3.48 16 43 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 44 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -84.62 371.80 -0.12 -84.74 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 0.42 Total: 4.45 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 6.85 Total: -1.13 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -8.19 Total: -101.43 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.80 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.90 Total: 45.95 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.05 Total: -9.79 kcal Total: -84.62 -0.12 -84.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323183414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.104 kcal (2) G-P(sol) polarization free energy of solvation -84.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds