Wall clock time and date at job start Sat Apr 11 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 109.47146 * 2 1 4 4 C 1.50699 * 109.46778 * 240.00106 * 2 1 3 5 5 N 1.31071 * 126.66403 * 285.02730 * 4 2 1 6 6 N 1.28837 * 107.98973 * 179.97438 * 5 4 2 7 7 N 1.28735 * 109.40262 * 359.97438 * 6 5 4 8 8 N 1.29019 * 108.80477 * 359.74787 * 7 6 5 9 9 C 1.46506 * 126.43940 * 180.24890 * 8 7 6 10 10 N 1.46901 * 109.47166 * 120.00536 * 2 1 3 11 11 C 1.47953 * 111.00279 * 36.51341 * 10 2 1 12 12 C 1.53929 * 86.18343 * 222.41821 * 11 10 2 13 13 C 1.47964 * 110.99759 * 297.15231 * 10 2 1 14 14 H 1.09000 * 113.86013 * 23.25925 * 13 10 2 15 15 C 1.52993 * 113.76299 * 251.90253 * 13 10 2 16 16 N 1.46500 * 109.47164 * 58.93445 * 15 13 10 17 17 C 1.34778 * 120.00073 * 180.02562 * 16 15 13 18 18 O 1.21272 * 120.00017 * 0.02562 * 17 16 15 19 19 C 1.50709 * 119.99685 * 180.02562 * 17 16 15 20 20 S 1.81004 * 109.46813 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99646 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00220 * 0.02562 * 21 20 19 23 23 C 1.38806 * 119.99839 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99680 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00145 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47103 * 89.99727 * 25 23 21 27 27 H 1.48501 * 109.47074 * 210.00093 * 25 23 21 28 28 H 1.48507 * 109.47042 * 330.00175 * 25 23 21 29 29 H 1.08991 * 109.47285 * 49.97903 * 1 2 3 30 30 H 1.09001 * 109.47060 * 169.98424 * 1 2 3 31 31 H 1.09008 * 109.46745 * 289.97547 * 1 2 3 32 32 H 1.09005 * 109.46821 * 270.18159 * 9 8 7 33 33 H 1.09003 * 109.46702 * 30.17253 * 9 8 7 34 34 H 1.08995 * 109.47549 * 150.17624 * 9 8 7 35 35 H 1.09005 * 113.75607 * 108.09661 * 11 10 2 36 36 H 1.09000 * 113.86268 * 336.75299 * 11 10 2 37 37 H 1.09001 * 113.73248 * 269.36303 * 12 11 10 38 38 H 1.08997 * 113.82931 * 138.09152 * 12 11 10 39 39 H 1.09005 * 109.47155 * 298.93921 * 15 13 10 40 40 H 1.08999 * 109.47458 * 178.93718 * 15 13 10 41 41 H 0.97002 * 119.99805 * 0.02562 * 16 15 13 42 42 H 1.08999 * 109.47186 * 300.00166 * 19 17 16 43 43 H 1.08995 * 109.46962 * 60.00170 * 19 17 16 44 44 H 0.96993 * 119.99575 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.0361 -2.0042 -1.4405 6 7 2.5432 -2.2166 -2.6057 7 7 2.8626 -1.0920 -3.1447 8 7 2.5578 -0.1390 -2.3301 9 6 2.7513 1.2953 -2.5574 10 7 2.0197 -0.6926 1.1994 11 6 1.1499 -1.8394 1.5418 12 6 1.2897 -1.3769 3.0033 13 6 1.6021 0.0167 2.4289 14 1 0.7212 0.6452 2.2977 15 6 2.7471 0.7360 3.1447 16 7 3.3521 1.7144 2.2376 17 6 4.3869 2.4705 2.6549 18 8 4.8174 2.3406 3.7812 19 6 5.0089 3.4774 1.7218 20 16 6.3636 4.3282 2.5686 21 6 6.8935 5.4127 1.2850 22 1 6.3944 5.4004 0.3273 23 6 7.9524 6.2829 1.5047 24 7 8.5609 6.2974 2.6719 25 14 8.5138 7.4331 0.1442 26 1 7.7667 8.7131 0.2385 27 1 9.9681 7.6969 0.2877 28 1 8.2526 6.8037 -1.1753 29 1 -0.3633 0.6608 -0.7869 30 1 -0.3633 -1.0120 -0.1787 31 1 -0.3633 0.3511 0.9659 32 1 3.7366 1.5907 -2.1968 33 1 2.6762 1.5074 -3.6240 34 1 1.9851 1.8549 -2.0208 35 1 1.6043 -2.8100 1.3429 36 1 0.1361 -1.7563 1.1499 37 1 2.1285 -1.8327 3.5293 38 1 0.3594 -1.4195 3.5696 39 1 3.4997 0.0084 3.4486 40 1 2.3602 1.2481 4.0257 41 1 3.0080 1.8180 1.3366 42 1 5.3952 2.9657 0.8404 43 1 4.2563 4.2052 1.4187 44 1 9.3006 6.9057 2.8255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323183415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:29 Heat of formation + Delta-G solvation = 130.966366 kcal Electronic energy + Delta-G solvation = -27416.326236 eV Core-core repulsion = 23534.715290 eV Total energy + Delta-G solvation = -3881.610947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.44669 -41.12014 -38.98101 -36.03214 -34.97417 -34.11933 -32.47664 -31.50203 -30.13388 -28.77176 -28.08328 -27.70321 -25.53180 -24.96824 -23.69704 -23.29622 -21.61106 -20.54173 -19.48487 -17.93724 -17.86516 -17.65475 -17.18366 -16.42962 -16.26990 -15.83161 -15.31180 -14.95133 -14.85270 -14.46301 -14.39006 -14.11152 -14.04246 -13.80120 -13.36331 -13.23753 -12.99176 -12.78145 -12.65136 -12.49108 -12.14273 -11.98708 -11.73464 -11.66369 -11.40131 -11.30834 -11.14494 -11.11754 -11.09609 -11.07505 -10.80214 -10.35182 -9.86885 -9.48314 -9.24082 -9.11823 -8.91705 -8.28661 -6.55037 -6.26409 -3.97338 0.92948 1.63868 1.99220 2.90979 3.05879 3.17423 3.18287 3.25179 3.29799 3.45428 3.66437 3.78785 4.04505 4.15272 4.16088 4.24028 4.40073 4.49260 4.57006 4.66137 4.69191 4.80134 4.82674 4.98714 5.06548 5.08815 5.12605 5.14545 5.32143 5.41133 5.43540 5.46784 5.56014 5.59090 5.75685 5.76831 5.79651 5.85435 5.88741 6.03158 6.46672 6.55593 7.53685 7.62232 8.29508 8.35982 8.56157 9.18699 10.80997 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011891 B = 0.002927 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.155997 B = 9563.859728 C =11399.549559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.129 3.871 3 H 0.102 0.898 4 C 0.199 3.801 5 N -0.288 5.288 6 N -0.078 5.078 7 N -0.094 5.094 8 N -0.305 5.305 9 C 0.072 3.928 10 N -0.458 5.458 11 C 0.000 4.000 12 C -0.135 4.135 13 C 0.015 3.985 14 H 0.093 0.907 15 C 0.141 3.859 16 N -0.734 5.734 17 C 0.531 3.469 18 O -0.515 6.515 19 C -0.153 4.153 20 S -0.058 6.058 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.866 5.866 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.273 1.273 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.389 0.611 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.414 -11.787 -6.448 25.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.016 3.984 3 H 0.120 0.880 4 C -0.080 4.080 5 N -0.138 5.138 6 N -0.072 5.072 7 N -0.080 5.080 8 N -0.107 5.107 9 C -0.069 4.069 10 N -0.181 5.181 11 C -0.128 4.128 12 C -0.173 4.173 13 C -0.094 4.094 14 H 0.111 0.889 15 C 0.017 3.983 16 N -0.388 5.388 17 C 0.317 3.683 18 O -0.389 6.389 19 C -0.304 4.304 20 S 0.169 5.831 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.501 5.501 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.223 0.777 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.557 -13.190 -5.380 24.195 hybrid contribution -1.095 2.169 -2.373 3.397 sum -20.653 -11.020 -7.753 24.659 Atomic orbital electron populations 1.22562 0.93896 1.04184 1.03908 1.20537 0.94427 0.96877 0.86534 0.88033 1.25647 0.99737 0.90410 0.92205 1.74948 1.17757 1.11386 1.09678 1.78629 1.11500 1.15453 1.01592 1.78905 1.18660 0.92276 1.18174 1.48399 1.40054 1.10474 1.11725 1.22512 1.05625 0.72365 1.06416 1.68795 1.45330 1.05316 0.98643 1.24128 0.97549 0.96787 0.94328 1.23357 1.03130 0.93916 0.96908 1.23947 0.97599 0.96607 0.91235 0.88909 1.21222 0.93942 0.90951 0.92225 1.45881 1.35818 1.40496 1.16616 1.20288 0.78942 0.80847 0.88268 1.90710 1.60751 1.67283 1.20128 1.23523 1.04557 1.00031 1.02274 1.85457 1.33582 1.44737 1.19332 1.22848 1.20864 1.24411 1.00415 0.91013 1.24994 0.95357 0.96828 0.96375 1.70014 1.21692 1.36455 1.21981 0.86176 0.78022 0.80326 0.81012 1.20256 1.20709 1.19732 0.91196 0.90124 0.89951 0.87679 0.87115 0.87713 0.88408 0.89509 0.88427 0.90217 0.90741 0.90816 0.77729 0.89528 0.89412 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.82 7.78 37.16 0.29 -0.53 16 2 C 0.13 0.85 2.56 -68.86 -0.18 0.68 16 3 H 0.10 0.51 5.46 -51.93 -0.28 0.22 16 4 C 0.20 1.93 6.89 -155.43 -1.07 0.86 16 5 N -0.29 -3.63 11.87 32.70 0.39 -3.24 16 6 N -0.08 -1.10 13.43 60.35 0.81 -0.29 16 7 N -0.09 -1.18 13.29 60.35 0.80 -0.38 16 8 N -0.30 -2.83 3.75 -65.02 -0.24 -3.07 16 9 C 0.07 0.33 11.04 59.85 0.66 0.99 16 10 N -0.46 -3.65 5.85 -224.15 -1.31 -4.96 16 11 C 0.00 0.00 7.12 -2.77 -0.02 -0.02 16 12 C -0.13 -0.79 7.84 -25.80 -0.20 -0.99 16 13 C 0.02 0.10 3.17 -66.65 -0.21 -0.11 16 14 H 0.09 0.44 6.04 -51.93 -0.31 0.13 16 15 C 0.14 1.46 5.80 -4.05 -0.02 1.43 16 16 N -0.73 -8.87 5.50 -60.29 -0.33 -9.20 16 17 C 0.53 9.38 7.85 -10.98 -0.09 9.29 16 18 O -0.51 -11.33 15.86 5.56 0.09 -11.24 16 19 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 20 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 21 C -0.54 -14.85 9.50 30.94 0.29 -14.56 16 22 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.71 13.22 55.49 0.73 -24.97 16 25 Si 0.92 20.86 29.55 -169.99 -5.02 15.84 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.43 6.40 -51.93 -0.33 0.10 16 31 H 0.08 0.26 5.98 -51.92 -0.31 -0.05 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.17 7.41 -51.93 -0.39 -0.22 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.46 4.98 -51.93 -0.26 0.21 16 37 H 0.10 0.66 7.94 -51.93 -0.41 0.25 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.91 7.91 -51.93 -0.41 0.50 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.39 3.57 6.51 -40.82 -0.27 3.30 16 42 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 43 H 0.09 1.48 8.14 -51.92 -0.42 1.06 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 375.31 15.07 5.66 5.66 Total: -1.00 -38.04 375.31 -6.96 -45.00 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.90 Total: -1.71 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -0.42 Total: -3.69 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.85 Total: -46.12 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.04 -6.96 -45.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323183415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.966 kcal (2) G-P(sol) polarization free energy of solvation -38.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds