Wall clock time and date at job start Sat Apr 11 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 109.47146 * 2 1 4 4 C 1.50699 * 109.46778 * 240.00106 * 2 1 3 5 5 N 1.31071 * 126.66403 * 285.02730 * 4 2 1 6 6 N 1.28837 * 107.98973 * 179.97438 * 5 4 2 7 7 N 1.28735 * 109.40262 * 359.97438 * 6 5 4 8 8 N 1.29019 * 108.80477 * 359.74787 * 7 6 5 9 9 C 1.46506 * 126.43940 * 180.24890 * 8 7 6 10 10 N 1.46901 * 109.47166 * 120.00536 * 2 1 3 11 11 C 1.47953 * 111.00279 * 36.51341 * 10 2 1 12 12 C 1.53929 * 86.18343 * 222.41821 * 11 10 2 13 13 C 1.47964 * 110.99759 * 297.15231 * 10 2 1 14 14 H 1.09000 * 113.86013 * 23.25925 * 13 10 2 15 15 C 1.52993 * 113.76299 * 251.90253 * 13 10 2 16 16 N 1.46500 * 109.47164 * 58.93445 * 15 13 10 17 17 C 1.34778 * 120.00073 * 180.02562 * 16 15 13 18 18 O 1.21272 * 120.00017 * 0.02562 * 17 16 15 19 19 C 1.50709 * 119.99685 * 180.02562 * 17 16 15 20 20 S 1.81004 * 109.46813 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99646 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00220 * 0.02562 * 21 20 19 23 23 C 1.38806 * 119.99839 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99680 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00145 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47103 * 89.99727 * 25 23 21 27 27 H 1.48501 * 109.47074 * 210.00093 * 25 23 21 28 28 H 1.48507 * 109.47042 * 330.00175 * 25 23 21 29 29 H 1.08991 * 109.47285 * 49.97903 * 1 2 3 30 30 H 1.09001 * 109.47060 * 169.98424 * 1 2 3 31 31 H 1.09008 * 109.46745 * 289.97547 * 1 2 3 32 32 H 1.09005 * 109.46821 * 270.18159 * 9 8 7 33 33 H 1.09003 * 109.46702 * 30.17253 * 9 8 7 34 34 H 1.08995 * 109.47549 * 150.17624 * 9 8 7 35 35 H 1.09005 * 113.75607 * 108.09661 * 11 10 2 36 36 H 1.09000 * 113.86268 * 336.75299 * 11 10 2 37 37 H 1.09001 * 113.73248 * 269.36303 * 12 11 10 38 38 H 1.08997 * 113.82931 * 138.09152 * 12 11 10 39 39 H 1.09005 * 109.47155 * 298.93921 * 15 13 10 40 40 H 1.08999 * 109.47458 * 178.93718 * 15 13 10 41 41 H 0.97002 * 119.99805 * 0.02562 * 16 15 13 42 42 H 1.08999 * 109.47186 * 300.00166 * 19 17 16 43 43 H 1.08995 * 109.46962 * 60.00170 * 19 17 16 44 44 H 0.96993 * 119.99575 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.0361 -2.0042 -1.4405 6 7 2.5432 -2.2166 -2.6057 7 7 2.8626 -1.0920 -3.1447 8 7 2.5578 -0.1390 -2.3301 9 6 2.7513 1.2953 -2.5574 10 7 2.0197 -0.6926 1.1994 11 6 1.1499 -1.8394 1.5418 12 6 1.2897 -1.3769 3.0033 13 6 1.6021 0.0167 2.4289 14 1 0.7212 0.6452 2.2977 15 6 2.7471 0.7360 3.1447 16 7 3.3521 1.7144 2.2376 17 6 4.3869 2.4705 2.6549 18 8 4.8174 2.3406 3.7812 19 6 5.0089 3.4774 1.7218 20 16 6.3636 4.3282 2.5686 21 6 6.8935 5.4127 1.2850 22 1 6.3944 5.4004 0.3273 23 6 7.9524 6.2829 1.5047 24 7 8.5609 6.2974 2.6719 25 14 8.5138 7.4331 0.1442 26 1 7.7667 8.7131 0.2385 27 1 9.9681 7.6969 0.2877 28 1 8.2526 6.8037 -1.1753 29 1 -0.3633 0.6608 -0.7869 30 1 -0.3633 -1.0120 -0.1787 31 1 -0.3633 0.3511 0.9659 32 1 3.7366 1.5907 -2.1968 33 1 2.6762 1.5074 -3.6240 34 1 1.9851 1.8549 -2.0208 35 1 1.6043 -2.8100 1.3429 36 1 0.1361 -1.7563 1.1499 37 1 2.1285 -1.8327 3.5293 38 1 0.3594 -1.4195 3.5696 39 1 3.4997 0.0084 3.4486 40 1 2.3602 1.2481 4.0257 41 1 3.0080 1.8180 1.3366 42 1 5.3952 2.9657 0.8404 43 1 4.2563 4.2052 1.4187 44 1 9.3006 6.9057 2.8255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323183415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:29 Heat of formation + Delta-G solvation = 99.539398 kcal Electronic energy + Delta-G solvation = -27417.689012 eV Core-core repulsion = 23534.715290 eV Total energy + Delta-G solvation = -3882.973722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.23525 -41.72123 -40.30617 -36.72414 -35.87317 -35.03412 -34.56482 -32.21156 -31.41480 -29.29293 -28.79924 -28.45701 -27.60781 -25.61664 -24.44391 -24.02221 -22.24405 -21.81304 -20.21262 -19.68188 -18.51304 -18.32491 -17.94845 -17.66577 -17.26497 -16.86424 -16.66545 -16.44482 -15.83947 -15.61342 -15.19484 -15.00098 -14.67549 -14.60285 -14.47135 -14.23804 -14.00549 -13.76517 -13.34983 -13.19784 -13.14970 -13.12730 -12.87798 -12.76772 -12.61962 -12.41433 -12.19501 -11.99974 -11.92451 -11.82145 -11.78571 -11.65722 -11.12735 -11.11227 -10.90106 -10.24054 -10.07021 -9.76972 -8.64650 -8.33141 -6.10802 0.18298 1.05887 1.15708 1.28624 1.43457 1.49131 1.58058 1.66106 2.23370 2.29580 2.70190 2.89434 3.01453 3.23799 3.33953 3.59309 3.68672 3.72982 3.92450 4.00003 4.08718 4.17705 4.18932 4.23471 4.31363 4.32741 4.36832 4.50589 4.51249 4.54165 4.67814 4.76385 4.81621 4.93467 4.97108 5.06266 5.08681 5.17302 5.27632 5.33871 5.43368 5.49245 5.96691 6.21182 6.51288 7.08456 7.27965 7.52654 8.75996 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011891 B = 0.002927 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.155997 B = 9563.859728 C =11399.549559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.128 3.872 3 H 0.124 0.876 4 C 0.202 3.798 5 N -0.315 5.315 6 N -0.116 5.116 7 N -0.114 5.114 8 N -0.298 5.298 9 C 0.056 3.944 10 N -0.486 5.486 11 C 0.003 3.997 12 C -0.128 4.128 13 C 0.030 3.970 14 H 0.127 0.873 15 C 0.139 3.861 16 N -0.705 5.705 17 C 0.531 3.469 18 O -0.567 6.567 19 C -0.128 4.128 20 S -0.156 6.156 21 C -0.543 4.543 22 H 0.086 0.914 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 0.997 3.003 26 H -0.267 1.267 27 H -0.282 1.282 28 H -0.256 1.256 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.141 0.859 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.408 0.592 42 H 0.106 0.894 43 H 0.116 0.884 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.981 -10.410 -8.029 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.015 3.985 3 H 0.141 0.859 4 C -0.077 4.077 5 N -0.164 5.164 6 N -0.109 5.109 7 N -0.100 5.100 8 N -0.100 5.100 9 C -0.083 4.083 10 N -0.210 5.210 11 C -0.125 4.125 12 C -0.166 4.166 13 C -0.079 4.079 14 H 0.144 0.856 15 C 0.015 3.985 16 N -0.359 5.359 17 C 0.316 3.684 18 O -0.445 6.445 19 C -0.279 4.279 20 S 0.071 5.929 21 C -0.691 4.691 22 H 0.104 0.896 23 C -0.192 4.192 24 N -0.549 5.549 25 Si 0.819 3.181 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.180 1.180 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.141 0.859 34 H 0.159 0.841 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.245 0.755 42 H 0.124 0.876 43 H 0.134 0.866 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.175 -11.829 -7.008 26.092 hybrid contribution -0.373 1.678 -1.876 2.544 sum -22.549 -10.151 -8.884 26.276 Atomic orbital electron populations 1.22558 0.91788 1.04076 1.05664 1.20820 0.95989 0.97077 0.84573 0.85875 1.26220 0.98646 0.89839 0.92965 1.74854 1.18654 1.13423 1.09515 1.78589 1.13111 1.16613 1.02628 1.78802 1.19271 0.92742 1.19216 1.48731 1.38738 1.11506 1.11030 1.23034 1.07169 0.70021 1.08106 1.68722 1.46636 1.06147 0.99520 1.24108 0.98026 0.95455 0.94936 1.23317 1.03779 0.92940 0.96568 1.23926 0.96773 0.96840 0.90382 0.85600 1.21371 0.94475 0.90065 0.92636 1.45601 1.33683 1.38959 1.17665 1.20105 0.79859 0.81132 0.87263 1.90702 1.62708 1.68941 1.22148 1.23360 1.02186 1.00412 1.01940 1.85690 1.38067 1.46569 1.22550 1.23209 1.21031 1.24213 1.00663 0.89573 1.26125 0.95414 0.98693 0.98995 1.70191 1.22465 1.37692 1.24558 0.84973 0.77252 0.77956 0.77927 1.19185 1.20765 1.17989 0.89676 0.91241 0.87858 0.87316 0.85911 0.84057 0.90751 0.87663 0.89925 0.87669 0.93080 0.90588 0.75537 0.87598 0.86558 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 7.78 71.98 0.56 -0.27 16 2 C 0.13 1.24 2.56 44.17 0.11 1.36 16 3 H 0.12 0.60 5.46 -2.39 -0.01 0.59 16 4 C 0.20 3.55 6.89 138.13 0.95 4.50 16 5 N -0.31 -7.84 11.87 -50.45 -0.60 -8.44 16 6 N -0.12 -3.32 13.43 37.01 0.50 -2.82 16 7 N -0.11 -2.81 13.29 37.02 0.49 -2.32 16 8 N -0.30 -4.98 3.75 -359.63 -1.35 -6.33 16 9 C 0.06 0.33 11.04 127.77 1.41 1.74 16 10 N -0.49 -6.53 5.85 -863.07 -5.05 -11.58 16 11 C 0.00 0.03 7.12 86.40 0.62 0.65 16 12 C -0.13 -1.19 7.84 31.24 0.25 -0.94 16 13 C 0.03 0.30 3.17 45.02 0.14 0.44 16 14 H 0.13 0.49 6.04 -2.39 -0.01 0.48 16 15 C 0.14 2.57 5.80 86.38 0.50 3.07 16 16 N -0.71 -15.12 5.50 -463.06 -2.55 -17.67 16 17 C 0.53 18.06 7.85 87.66 0.69 18.75 16 18 O -0.57 -25.23 15.86 -3.01 -0.05 -25.28 16 19 C -0.13 -4.61 6.16 71.24 0.44 -4.17 16 20 S -0.16 -8.35 20.57 -56.49 -1.16 -9.52 16 21 C -0.54 -29.77 9.50 67.96 0.65 -29.12 16 22 H 0.09 4.29 7.80 -2.91 -0.02 4.26 16 23 C 0.01 0.69 5.49 84.86 0.47 1.15 16 24 N -0.91 -55.17 13.22 21.65 0.29 -54.89 16 25 Si 1.00 42.14 29.55 68.60 2.03 44.17 16 26 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 27 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 29 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.07 0.52 6.40 -2.39 -0.02 0.51 16 31 H 0.10 0.06 5.98 -2.38 -0.01 0.05 16 32 H 0.11 0.61 8.14 -2.38 -0.02 0.60 16 33 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.14 -0.25 7.41 -2.39 -0.02 -0.26 16 35 H 0.07 1.22 8.14 -2.38 -0.02 1.21 16 36 H 0.11 0.83 4.98 -2.39 -0.01 0.82 16 37 H 0.08 1.04 7.94 -2.39 -0.02 1.02 16 38 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.05 1.22 7.91 -2.38 -0.02 1.21 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.41 5.73 6.51 -92.71 -0.60 5.13 16 42 H 0.11 3.43 8.14 -2.40 -0.02 3.41 16 43 H 0.12 3.55 8.14 -2.40 -0.02 3.53 16 44 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -88.37 375.31 -0.23 -88.59 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.44 Total: 8.94 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 6.78 Total: -2.86 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -8.27 Total: -104.04 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.05 Total: -25.28 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Total: -88.37 -0.23 -88.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323183415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.133 kcal (2) G-P(sol) polarization free energy of solvation -88.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds