Wall clock time and date at job start Sat Apr 11 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47672 * 2 1 4 4 N 1.39928 * 125.75346 * 270.00235 * 3 2 1 5 5 C 1.30405 * 108.96122 * 179.73062 * 4 3 2 6 6 C 1.50704 * 125.97874 * 180.26299 * 5 4 3 7 7 C 1.41340 * 108.05086 * 0.41170 * 5 4 3 8 8 C 1.47295 * 126.44236 * 179.85233 * 7 5 4 9 9 O 1.21618 * 120.00052 * 269.71521 * 8 7 5 10 10 N 1.34786 * 120.00226 * 89.70839 * 8 7 5 11 11 C 1.47421 * 125.64190 * 4.89607 * 10 8 7 12 12 C 1.54911 * 104.82908 * 204.16282 * 11 10 8 13 13 C 1.55151 * 101.58372 * 322.99189 * 12 11 10 14 14 C 1.47016 * 125.65019 * 184.93979 * 10 8 7 15 15 H 1.08994 * 109.88880 * 59.33064 * 14 10 8 16 16 C 1.53004 * 109.88147 * 298.31805 * 14 10 8 17 17 N 1.46499 * 109.47283 * 175.29078 * 16 14 10 18 18 C 1.36932 * 120.00036 * 174.93651 * 17 16 14 19 19 H 1.08001 * 120.00087 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99737 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00145 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99703 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47085 * 180.02562 * 22 20 18 24 24 H 1.48498 * 109.47183 * 300.00000 * 22 20 18 25 25 H 1.48496 * 109.47477 * 60.00002 * 22 20 18 26 26 C 1.34350 * 125.74702 * 89.99785 * 3 2 1 27 27 Cl 1.73601 * 126.32011 * 0.02562 * 26 3 2 28 28 H 1.09007 * 109.46851 * 59.99823 * 1 2 3 29 29 H 1.09001 * 109.47799 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47360 * 300.00084 * 1 2 3 31 31 H 1.09001 * 109.47360 * 239.99916 * 2 1 3 32 32 H 1.08997 * 109.47180 * 120.00631 * 2 1 3 33 33 H 1.08998 * 109.46625 * 270.17430 * 6 5 4 34 34 H 1.08996 * 109.46681 * 30.17145 * 6 5 4 35 35 H 1.08997 * 109.47073 * 150.17645 * 6 5 4 36 36 H 1.08999 * 110.36951 * 323.00100 * 11 10 8 37 37 H 1.08998 * 110.37038 * 85.21988 * 11 10 8 38 38 H 1.08999 * 111.00685 * 81.06795 * 12 11 10 39 39 H 1.09001 * 111.00381 * 204.91375 * 12 11 10 40 40 H 1.08994 * 110.72241 * 277.14055 * 13 12 11 41 41 H 1.08998 * 110.72161 * 153.86171 * 13 12 11 42 42 H 1.08997 * 109.46646 * 55.29460 * 16 14 10 43 43 H 1.09003 * 109.47367 * 295.29651 * 16 14 10 44 44 H 0.97005 * 119.99755 * 354.93770 * 17 16 14 45 45 H 0.96995 * 119.99957 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2910 2.1520 -1.1356 5 6 2.7018 3.3309 -0.7588 6 6 3.0946 4.4647 -1.6706 7 6 2.7175 3.3583 0.6542 8 6 3.1185 4.4934 1.5029 9 8 4.2771 4.6113 1.8532 10 7 2.2013 5.4016 1.8912 11 6 0.7529 5.3270 1.6266 12 6 0.2622 6.7949 1.6903 13 6 1.1362 7.3661 2.8379 14 6 2.4797 6.6310 2.6479 15 1 3.1736 7.2602 2.0906 16 6 3.0774 6.2785 4.0115 17 7 3.4551 7.5086 4.7119 18 6 3.9181 7.4489 5.9991 19 1 4.0052 6.4950 6.4980 20 6 4.2754 8.6146 6.6629 21 7 4.1688 9.7771 6.0550 22 14 4.9077 8.5331 8.4187 23 1 5.2173 9.9044 8.8975 24 1 3.8698 7.9274 9.2910 25 1 6.1382 7.7030 8.4639 26 6 2.2801 2.1211 1.0904 27 17 2.1024 1.6170 2.7421 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.1593 4.3985 -1.8946 34 1 2.5237 4.4004 -2.5969 35 1 2.8849 5.4150 -1.1797 36 1 0.5691 4.9082 0.6372 37 1 0.2582 4.7265 2.3899 38 1 0.4604 7.3143 0.7527 39 1 -0.7967 6.8422 1.9449 40 1 0.7009 7.1292 3.8087 41 1 1.2661 8.4424 2.7247 42 1 3.9602 5.6548 3.8709 43 1 2.3395 5.7359 4.6024 44 1 3.3772 8.3653 4.2636 45 1 3.8401 9.8194 5.1434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324274561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:35 Heat of formation + Delta-G solvation = 50.650260 kcal Electronic energy + Delta-G solvation = -28020.780593 eV Core-core repulsion = 24101.350421 eV Total energy + Delta-G solvation = -3919.430172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.78376 -39.76261 -37.26906 -37.25665 -35.29492 -34.69798 -31.87849 -31.72665 -31.28550 -30.08527 -28.45881 -28.02140 -25.05976 -24.33545 -23.14002 -22.28617 -21.79436 -20.89698 -20.28744 -19.04051 -17.72239 -17.17155 -16.73837 -16.33367 -15.84394 -15.37037 -15.05445 -14.73139 -14.22495 -14.02937 -13.77790 -13.63895 -13.56107 -13.32426 -13.25254 -13.04555 -12.94168 -12.72550 -12.64121 -12.50439 -12.20019 -12.05558 -11.90880 -11.77225 -11.56490 -11.17098 -10.99433 -10.75796 -10.58422 -10.52195 -10.42493 -9.93564 -9.76825 -9.56825 -9.13369 -8.88515 -8.75897 -8.42920 -6.89205 -6.01514 -2.99764 1.02705 1.14869 2.05573 2.13743 2.65199 3.15085 3.57640 3.62151 3.78980 3.93277 4.36289 4.42411 4.57344 4.61110 4.67565 4.68883 4.76879 4.93451 5.02584 5.11150 5.14458 5.17356 5.36794 5.38155 5.45005 5.49981 5.54340 5.59054 5.59656 5.69090 5.79353 5.91013 5.95314 6.04395 6.07400 6.14807 6.25771 6.38626 6.52783 6.81739 7.04590 7.15312 7.66412 7.90810 8.32986 8.84815 9.32624 10.18644 10.34112 11.47480 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016081 B = 0.003059 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.788392 B = 9150.060828 C = 9777.632101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.351 5.351 4 N -0.273 5.273 5 C 0.119 3.881 6 C -0.077 4.077 7 C -0.246 4.246 8 C 0.607 3.393 9 O -0.514 6.514 10 N -0.601 5.601 11 C 0.104 3.896 12 C -0.133 4.133 13 C -0.120 4.120 14 C 0.131 3.869 15 H 0.076 0.924 16 C 0.151 3.849 17 N -0.739 5.739 18 C -0.324 4.324 19 H 0.063 0.937 20 C -0.047 4.047 21 N -0.947 5.947 22 Si 1.080 2.920 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.296 1.296 26 C 0.157 3.843 27 Cl 0.015 6.985 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.036 0.964 43 H 0.021 0.979 44 H 0.366 0.634 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.269 -18.567 -17.332 28.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.134 5.134 4 N -0.096 5.096 5 C -0.047 4.047 6 C -0.136 4.136 7 C -0.262 4.262 8 C 0.393 3.607 9 O -0.388 6.388 10 N -0.336 5.336 11 C -0.019 4.019 12 C -0.171 4.171 13 C -0.158 4.158 14 C 0.028 3.972 15 H 0.094 0.906 16 C 0.023 3.977 17 N -0.385 5.385 18 C -0.455 4.455 19 H 0.081 0.919 20 C -0.244 4.244 21 N -0.593 5.593 22 Si 0.911 3.089 23 H -0.211 1.211 24 H -0.224 1.224 25 H -0.223 1.223 26 C 0.000 4.000 27 Cl 0.043 6.957 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.054 0.946 43 H 0.039 0.961 44 H 0.199 0.801 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.319 -18.839 -16.594 27.539 hybrid contribution -0.516 -0.588 -0.469 0.912 sum -11.835 -19.427 -17.063 28.437 Atomic orbital electron populations 1.22191 0.93467 1.03594 1.03583 1.21893 0.95891 0.76927 1.05246 1.48561 1.50340 1.12554 1.01906 1.77233 1.23367 1.03776 1.05259 1.22275 0.96638 0.94225 0.91574 1.20301 1.02748 0.93097 0.97427 1.19785 1.17553 0.94779 0.94062 1.16703 0.84436 0.80475 0.79120 1.90862 1.18200 1.74662 1.55094 1.48406 1.07370 1.22916 1.54888 1.22253 0.80934 0.97896 1.00827 1.22789 1.00061 0.94584 0.99680 1.22666 0.93792 1.00352 0.98999 1.21850 0.97235 0.84472 0.93683 0.90625 1.20921 0.97243 0.90595 0.88987 1.42204 1.79770 1.02749 1.13825 1.20015 1.39896 0.95341 0.90224 0.91922 1.25736 1.01104 0.91668 1.05885 1.70877 1.49859 1.24645 1.13899 0.83243 0.75785 0.75372 0.74512 1.21058 1.22374 1.22306 1.21958 1.02165 0.91978 0.83870 1.98456 1.95923 1.90886 1.10449 0.91258 0.89959 0.91712 0.87740 0.88485 0.89519 0.90040 0.89989 0.91099 0.91567 0.90702 0.90001 0.89909 0.89926 0.94571 0.96121 0.80121 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.24 37.16 0.38 -0.52 16 2 C 0.12 0.80 6.97 -4.05 -0.03 0.77 16 3 N -0.35 -3.76 3.58 -57.57 -0.21 -3.97 16 4 N -0.27 -3.27 12.49 33.90 0.42 -2.84 16 5 C 0.12 1.48 7.26 -82.02 -0.60 0.88 16 6 C -0.08 -0.74 10.28 36.01 0.37 -0.37 16 7 C -0.25 -3.49 4.74 -105.02 -0.50 -3.99 16 8 C 0.61 10.37 7.05 -12.57 -0.09 10.28 16 9 O -0.51 -11.08 15.90 5.26 0.08 -10.99 16 10 N -0.60 -9.31 3.06 -164.32 -0.50 -9.82 16 11 C 0.10 1.22 6.73 -2.53 -0.02 1.20 16 12 C -0.13 -1.42 7.08 -24.58 -0.17 -1.59 16 13 C -0.12 -1.76 6.21 -24.90 -0.15 -1.91 16 14 C 0.13 2.31 2.95 -66.95 -0.20 2.11 16 15 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 16 C 0.15 3.41 5.65 -4.04 -0.02 3.39 16 17 N -0.74 -19.66 5.41 -59.91 -0.32 -19.98 16 18 C -0.32 -9.62 9.99 -15.06 -0.15 -9.78 16 19 H 0.06 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.05 -1.41 5.50 -17.43 -0.10 -1.51 16 21 N -0.95 -29.97 13.70 55.49 0.76 -29.21 16 22 Si 1.08 26.91 29.92 -169.99 -5.09 21.83 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.30 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 26 C 0.16 1.97 7.54 -16.43 -0.12 1.85 16 27 Cl 0.01 0.17 28.56 -51.86 -1.48 -1.31 16 28 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.53 7.77 -51.93 -0.40 0.13 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 36 H 0.07 0.73 7.61 -51.93 -0.40 0.34 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.32 7.77 -51.93 -0.40 0.92 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.04 0.93 6.56 -51.93 -0.34 0.59 16 43 H 0.02 0.48 8.03 -51.93 -0.42 0.06 16 44 H 0.37 9.71 6.43 -40.82 -0.26 9.44 16 45 H 0.25 7.87 6.77 -40.82 -0.28 7.60 16 LS Contribution 388.48 15.07 5.85 5.85 Total: -1.00 -36.92 388.48 -8.65 -45.57 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.77 Total: 4.06 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.40 Total: 0.82 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: 0.15 Total: -65.83 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 26.91 SS G_CDS: -5.09 Total: 21.83 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -1.48 Total: -1.31 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.92 -8.65 -45.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324274561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.216 kcal (2) G-P(sol) polarization free energy of solvation -36.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds