Wall clock time and date at job start Sat Apr 11 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47672 * 2 1 4 4 N 1.39928 * 125.75346 * 270.00235 * 3 2 1 5 5 C 1.30405 * 108.96122 * 179.73062 * 4 3 2 6 6 C 1.50704 * 125.97874 * 180.26299 * 5 4 3 7 7 C 1.41340 * 108.05086 * 0.41170 * 5 4 3 8 8 C 1.47295 * 126.44236 * 179.85233 * 7 5 4 9 9 O 1.21618 * 120.00052 * 269.71521 * 8 7 5 10 10 N 1.34786 * 120.00226 * 89.70839 * 8 7 5 11 11 C 1.47421 * 125.64190 * 4.89607 * 10 8 7 12 12 C 1.54911 * 104.82908 * 204.16282 * 11 10 8 13 13 C 1.55151 * 101.58372 * 322.99189 * 12 11 10 14 14 C 1.47016 * 125.65019 * 184.93979 * 10 8 7 15 15 H 1.08994 * 109.88880 * 59.33064 * 14 10 8 16 16 C 1.53004 * 109.88147 * 298.31805 * 14 10 8 17 17 N 1.46499 * 109.47283 * 175.29078 * 16 14 10 18 18 C 1.36932 * 120.00036 * 174.93651 * 17 16 14 19 19 H 1.08001 * 120.00087 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99737 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00145 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99703 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47085 * 180.02562 * 22 20 18 24 24 H 1.48498 * 109.47183 * 300.00000 * 22 20 18 25 25 H 1.48496 * 109.47477 * 60.00002 * 22 20 18 26 26 C 1.34350 * 125.74702 * 89.99785 * 3 2 1 27 27 Cl 1.73601 * 126.32011 * 0.02562 * 26 3 2 28 28 H 1.09007 * 109.46851 * 59.99823 * 1 2 3 29 29 H 1.09001 * 109.47799 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47360 * 300.00084 * 1 2 3 31 31 H 1.09001 * 109.47360 * 239.99916 * 2 1 3 32 32 H 1.08997 * 109.47180 * 120.00631 * 2 1 3 33 33 H 1.08998 * 109.46625 * 270.17430 * 6 5 4 34 34 H 1.08996 * 109.46681 * 30.17145 * 6 5 4 35 35 H 1.08997 * 109.47073 * 150.17645 * 6 5 4 36 36 H 1.08999 * 110.36951 * 323.00100 * 11 10 8 37 37 H 1.08998 * 110.37038 * 85.21988 * 11 10 8 38 38 H 1.08999 * 111.00685 * 81.06795 * 12 11 10 39 39 H 1.09001 * 111.00381 * 204.91375 * 12 11 10 40 40 H 1.08994 * 110.72241 * 277.14055 * 13 12 11 41 41 H 1.08998 * 110.72161 * 153.86171 * 13 12 11 42 42 H 1.08997 * 109.46646 * 55.29460 * 16 14 10 43 43 H 1.09003 * 109.47367 * 295.29651 * 16 14 10 44 44 H 0.97005 * 119.99755 * 354.93770 * 17 16 14 45 45 H 0.96995 * 119.99957 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2910 2.1520 -1.1356 5 6 2.7018 3.3309 -0.7588 6 6 3.0946 4.4647 -1.6706 7 6 2.7175 3.3583 0.6542 8 6 3.1185 4.4934 1.5029 9 8 4.2771 4.6113 1.8532 10 7 2.2013 5.4016 1.8912 11 6 0.7529 5.3270 1.6266 12 6 0.2622 6.7949 1.6903 13 6 1.1362 7.3661 2.8379 14 6 2.4797 6.6310 2.6479 15 1 3.1736 7.2602 2.0906 16 6 3.0774 6.2785 4.0115 17 7 3.4551 7.5086 4.7119 18 6 3.9181 7.4489 5.9991 19 1 4.0052 6.4950 6.4980 20 6 4.2754 8.6146 6.6629 21 7 4.1688 9.7771 6.0550 22 14 4.9077 8.5331 8.4187 23 1 5.2173 9.9044 8.8975 24 1 3.8698 7.9274 9.2910 25 1 6.1382 7.7030 8.4639 26 6 2.2801 2.1211 1.0904 27 17 2.1024 1.6170 2.7421 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.1593 4.3985 -1.8946 34 1 2.5237 4.4004 -2.5969 35 1 2.8849 5.4150 -1.1797 36 1 0.5691 4.9082 0.6372 37 1 0.2582 4.7265 2.3899 38 1 0.4604 7.3143 0.7527 39 1 -0.7967 6.8422 1.9449 40 1 0.7009 7.1292 3.8087 41 1 1.2661 8.4424 2.7247 42 1 3.9602 5.6548 3.8709 43 1 2.3395 5.7359 4.6024 44 1 3.3772 8.3653 4.2636 45 1 3.8401 9.8194 5.1434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324274561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:34 Heat of formation + Delta-G solvation = 26.002687 kcal Electronic energy + Delta-G solvation = -28021.849392 eV Core-core repulsion = 24101.350421 eV Total energy + Delta-G solvation = -3920.498971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.73073 -41.04828 -38.64180 -38.22536 -36.75556 -36.00565 -33.59847 -32.74587 -32.42728 -31.16053 -30.05564 -28.77939 -26.58017 -25.69186 -24.59203 -23.71618 -22.75043 -21.97933 -21.35228 -20.31565 -19.40173 -18.59659 -17.95069 -17.57695 -16.81895 -16.69492 -16.25308 -15.80593 -15.68177 -15.35415 -15.28339 -15.08181 -14.99407 -14.43457 -14.24180 -14.20223 -13.82503 -13.70696 -13.59041 -13.43382 -13.20334 -13.14212 -12.92915 -12.74044 -12.73862 -12.59884 -12.30329 -12.18710 -11.99377 -11.91875 -11.88439 -11.70372 -11.33764 -11.18118 -10.91347 -10.42920 -9.87480 -9.79035 -9.14822 -8.43326 -5.36838 0.07653 0.19926 1.08340 1.33482 1.35543 1.56316 1.66955 1.83868 1.93196 2.69724 3.09677 3.35991 3.48111 3.55353 3.62840 3.82278 3.86905 3.95087 3.95389 3.98279 4.14933 4.18166 4.23978 4.26516 4.41966 4.61237 4.64020 4.64934 4.68723 4.69651 4.77162 4.85602 4.90357 4.96375 5.05381 5.07599 5.14506 5.22026 5.29782 5.36398 5.47516 5.53632 6.24033 6.41137 6.47540 6.99847 7.06934 7.94393 8.07075 9.08955 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016081 B = 0.003059 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.788392 B = 9150.060828 C = 9777.632101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.340 5.340 4 N -0.277 5.277 5 C 0.117 3.883 6 C -0.077 4.077 7 C -0.272 4.272 8 C 0.609 3.391 9 O -0.572 6.572 10 N -0.597 5.597 11 C 0.100 3.900 12 C -0.115 4.115 13 C -0.116 4.116 14 C 0.137 3.863 15 H 0.060 0.940 16 C 0.159 3.841 17 N -0.746 5.746 18 C -0.339 4.339 19 H 0.057 0.943 20 C -0.098 4.098 21 N -0.969 5.969 22 Si 1.128 2.872 23 H -0.286 1.286 24 H -0.275 1.275 25 H -0.283 1.283 26 C 0.158 3.842 27 Cl 0.017 6.983 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.002 0.998 43 H 0.017 0.983 44 H 0.364 0.636 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.298 -19.926 -18.289 30.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.011 4.011 3 N -0.122 5.122 4 N -0.100 5.100 5 C -0.048 4.048 6 C -0.135 4.135 7 C -0.288 4.288 8 C 0.397 3.603 9 O -0.450 6.450 10 N -0.330 5.330 11 C -0.021 4.021 12 C -0.152 4.152 13 C -0.154 4.154 14 C 0.033 3.967 15 H 0.078 0.922 16 C 0.031 3.969 17 N -0.392 5.392 18 C -0.470 4.470 19 H 0.075 0.925 20 C -0.289 4.289 21 N -0.617 5.617 22 Si 0.952 3.048 23 H -0.212 1.212 24 H -0.200 1.200 25 H -0.209 1.209 26 C -0.001 4.001 27 Cl 0.045 6.955 28 H 0.081 0.919 29 H 0.127 0.873 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.127 0.873 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.020 0.980 43 H 0.035 0.965 44 H 0.197 0.803 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.418 -20.247 -17.602 29.997 hybrid contribution 0.107 -0.281 -0.196 0.359 sum -13.312 -20.528 -17.799 30.255 Atomic orbital electron populations 1.22160 0.92080 1.05089 1.02787 1.22356 0.97017 0.74976 1.06706 1.48943 1.48904 1.13414 1.00954 1.77217 1.23485 1.03634 1.05663 1.22589 0.96330 0.94955 0.90974 1.20393 1.03164 0.92018 0.97941 1.19602 1.20001 0.94538 0.94664 1.17137 0.83715 0.80932 0.78561 1.90824 1.20676 1.76164 1.57378 1.48486 1.09103 1.21726 1.53678 1.22527 0.78234 0.99107 1.02240 1.22800 1.00785 0.93076 0.98563 1.22584 0.92578 1.00108 1.00163 1.21618 0.98591 0.85674 0.90788 0.92194 1.20868 0.95839 0.88669 0.91516 1.42301 1.79678 1.03854 1.13320 1.20318 1.39865 0.95282 0.91530 0.92499 1.27242 1.01038 0.91107 1.09541 1.70981 1.51305 1.25569 1.13831 0.82636 0.76216 0.75563 0.70343 1.21199 1.20048 1.20948 1.21949 1.01841 0.91866 0.84421 1.98455 1.95872 1.90794 1.10370 0.91920 0.87328 0.92540 0.86084 0.87285 0.89458 0.87621 0.90318 0.88915 0.90962 0.88966 0.86962 0.91318 0.89858 0.97962 0.96497 0.80345 0.94425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 10.24 71.98 0.74 -0.57 16 2 C 0.11 1.19 6.97 86.38 0.60 1.79 16 3 N -0.34 -6.73 3.58 -336.07 -1.20 -7.93 16 4 N -0.28 -6.14 12.49 -46.66 -0.58 -6.72 16 5 C 0.12 2.78 7.26 43.53 0.32 3.10 16 6 C -0.08 -1.39 10.28 71.24 0.73 -0.65 16 7 C -0.27 -7.65 4.74 -20.12 -0.10 -7.75 16 8 C 0.61 21.35 7.05 86.62 0.61 21.96 16 9 O -0.57 -26.05 15.90 -4.09 -0.07 -26.11 16 10 N -0.60 -18.57 3.06 -792.04 -2.43 -21.00 16 11 C 0.10 2.15 6.73 86.86 0.58 2.74 16 12 C -0.11 -2.12 7.08 31.98 0.23 -1.89 16 13 C -0.12 -3.33 6.21 31.78 0.20 -3.13 16 14 C 0.14 4.99 2.95 45.34 0.13 5.13 16 15 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 16 C 0.16 7.53 5.65 86.38 0.49 8.01 16 17 N -0.75 -41.14 5.41 -343.45 -1.86 -43.00 16 18 C -0.34 -20.61 9.99 84.03 0.84 -19.77 16 19 H 0.06 3.46 7.83 -2.91 -0.02 3.43 16 20 C -0.10 -5.94 5.50 84.86 0.47 -5.47 16 21 N -0.97 -62.23 13.70 21.65 0.30 -61.93 16 22 Si 1.13 54.20 29.92 68.60 2.05 56.26 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 26 C 0.16 3.84 7.54 84.32 0.64 4.48 16 27 Cl 0.02 0.39 28.56 -2.72 -0.08 0.32 16 28 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.11 0.96 7.77 -2.39 -0.02 0.94 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.46 8.01 -2.39 -0.02 1.44 16 36 H 0.09 1.65 7.61 -2.39 -0.02 1.63 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.07 2.17 7.77 -2.39 -0.02 2.15 16 41 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.00 0.13 6.56 -2.39 -0.02 0.12 16 43 H 0.02 0.81 8.03 -2.39 -0.02 0.79 16 44 H 0.36 20.08 6.43 -92.70 -0.60 19.49 16 45 H 0.25 15.62 6.77 -92.71 -0.63 14.99 16 Total: -1.00 -82.68 388.48 3.16 -79.52 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.55 Total: 22.63 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 6.47 Total: 7.97 kcal Atomic # 7 Polarization: -134.81 SS G_CDS: -5.77 Total: -140.58 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.07 Total: -26.11 kcal Atomic # 14 Polarization: 54.20 SS G_CDS: 2.05 Total: 56.26 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -0.08 Total: 0.32 kcal Total: -82.68 3.16 -79.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324274561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.527 kcal (2) G-P(sol) polarization free energy of solvation -82.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds