Wall clock time and date at job start Sat Apr 11 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47175 * 2 1 4 4 N 1.46502 * 109.47283 * 240.00327 * 2 1 3 5 5 C 1.36937 * 120.00065 * 85.00039 * 4 2 1 6 6 H 1.07996 * 120.00135 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00098 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99617 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00112 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46962 * 90.00010 * 9 7 5 11 11 H 1.48502 * 109.47287 * 209.99595 * 9 7 5 12 12 H 1.48497 * 109.47442 * 329.99761 * 9 7 5 13 13 C 1.52995 * 109.47055 * 120.00185 * 2 1 3 14 14 H 1.08994 * 110.88784 * 63.88112 * 13 2 1 15 15 C 1.55158 * 111.00364 * 299.99950 * 13 2 1 16 16 C 1.54323 * 102.94177 * 206.38958 * 15 13 2 17 17 N 1.47018 * 107.27523 * 22.19264 * 16 15 13 18 18 C 1.34776 * 125.65254 * 181.02639 * 17 16 15 19 19 O 1.21484 * 119.99993 * 180.02562 * 18 17 16 20 20 C 1.48453 * 119.99763 * 0.02562 * 18 17 16 21 21 C 1.39540 * 120.54700 * 179.97438 * 20 18 17 22 22 C 1.38762 * 118.25810 * 180.02562 * 21 20 18 23 23 C 1.50703 * 120.42183 * 179.97438 * 22 21 20 24 24 F 1.39899 * 109.47150 * 210.00090 * 23 22 21 25 25 F 1.39896 * 109.47285 * 330.00547 * 23 22 21 26 26 N 1.32200 * 119.15049 * 359.74937 * 22 21 20 27 27 C 1.31877 * 121.03800 * 0.51200 * 26 22 21 28 28 N 1.31588 * 121.91309 * 359.47173 * 27 26 22 29 29 C 1.47433 * 108.70052 * 1.28906 * 17 16 15 30 30 H 1.09001 * 109.46799 * 59.99971 * 1 2 3 31 31 H 1.09002 * 109.46750 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47215 * 299.99746 * 1 2 3 33 33 H 0.96997 * 119.99930 * 265.00207 * 4 2 1 34 34 H 0.96999 * 119.99822 * 179.97438 * 8 7 5 35 35 H 1.08999 * 110.72041 * 88.02618 * 15 13 2 36 36 H 1.08995 * 110.87209 * 324.81949 * 15 13 2 37 37 H 1.09005 * 109.88345 * 262.77730 * 16 15 13 38 38 H 1.09003 * 110.01445 * 141.68599 * 16 15 13 39 39 H 1.08000 * 120.86918 * 359.97438 * 21 20 18 40 40 H 1.09006 * 109.46795 * 90.00152 * 23 22 21 41 41 H 1.08002 * 119.04657 * 179.75987 * 27 26 22 42 42 H 1.09002 * 110.36728 * 94.48419 * 29 17 16 43 43 H 1.09000 * 110.36348 * 216.80187 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1492 -0.0074 -2.3758 6 1 1.8920 1.0404 -2.4243 7 6 2.6114 -0.6618 -3.5093 8 7 2.9245 -1.9389 -3.4502 9 14 2.7892 0.2700 -5.1185 10 1 4.1515 0.8550 -5.2038 11 1 2.5785 -0.6614 -6.2557 12 1 1.7792 1.3570 -5.1753 13 6 2.0400 -0.7213 1.2492 14 1 1.7469 -1.7710 1.2387 15 6 1.5425 -0.0178 2.5396 16 6 2.6244 -0.3900 3.5752 17 7 3.8422 -0.7378 2.8285 18 6 5.0090 -1.1384 3.3713 19 8 5.9541 -1.4005 2.6544 20 6 5.1392 -1.2594 4.8451 21 6 6.3416 -1.6736 5.4193 22 6 6.4104 -1.7707 6.8018 23 6 7.6848 -2.2138 7.4732 24 9 7.3775 -2.8738 8.6678 25 9 8.3806 -3.0827 6.6259 26 7 5.3452 -1.4653 7.5226 27 6 4.2221 -1.0817 6.9474 28 7 4.1110 -0.9752 5.6406 29 6 3.5776 -0.5697 1.3879 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6317 -1.1527 34 1 3.2471 -2.3963 -4.2424 35 1 0.5701 -0.4074 2.8408 36 1 1.4975 1.0623 2.4003 37 1 2.2944 -1.2452 4.1650 38 1 2.8211 0.4584 4.2306 39 1 7.1961 -1.9132 4.8037 40 1 8.3040 -1.3427 7.6882 41 1 3.3703 -0.8436 7.5672 42 1 3.8952 0.4191 1.0567 43 1 4.0880 -1.3443 0.8156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325418733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:43 Heat of formation + Delta-G solvation = -61.085165 kcal Electronic energy + Delta-G solvation = -29036.968462 eV Core-core repulsion = 24560.896398 eV Total energy + Delta-G solvation = -4476.072064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.54756 -47.55096 -41.78604 -39.86859 -37.89557 -35.37243 -34.70572 -33.00081 -32.47470 -30.57904 -28.75275 -28.35138 -28.09977 -25.65601 -24.30481 -23.93760 -22.91317 -21.56890 -20.25822 -19.68149 -18.70176 -18.26848 -18.09568 -17.39816 -17.02996 -16.42021 -16.15018 -15.97608 -15.86108 -15.45137 -15.01778 -14.71920 -14.34184 -14.21664 -13.86214 -13.81756 -13.65379 -13.43092 -13.10684 -12.80126 -12.73619 -12.26827 -12.16398 -12.06618 -11.75400 -11.41027 -11.39282 -11.32906 -10.88725 -10.77983 -10.69449 -10.56372 -10.47169 -10.34152 -10.21422 -9.89155 -9.76898 -9.62939 -8.91831 -8.63686 -6.96975 -5.76172 -3.05337 -0.06968 0.14513 2.40807 2.52383 2.71116 3.26023 3.38551 3.43937 3.46388 3.48940 3.50687 3.57888 4.02873 4.26909 4.29868 4.39387 4.56777 4.69971 4.76523 4.91001 5.00175 5.04417 5.38546 5.48913 5.55468 5.61190 5.75574 5.86961 5.90524 5.93066 6.08133 6.11244 6.13727 6.23162 6.29591 6.38121 6.50936 6.61381 6.83677 7.05673 7.26629 7.39577 7.70056 7.89779 8.41876 9.53277 10.09831 10.44181 11.46334 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.019480 B = 0.002297 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.042429 B =12187.501010 C =13349.534524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.101 4.101 14 H 0.082 0.918 15 C -0.129 4.129 16 C 0.114 3.886 17 N -0.591 5.591 18 C 0.574 3.426 19 O -0.519 6.519 20 C 0.151 3.849 21 C -0.140 4.140 22 C 0.098 3.902 23 C 0.331 3.669 24 F -0.181 7.181 25 F -0.186 7.186 26 N -0.481 5.481 27 C 0.298 3.702 28 N -0.477 5.477 29 C 0.117 3.883 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.171 0.829 40 H 0.139 0.861 41 H 0.212 0.788 42 H 0.076 0.924 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 2.818 25.898 26.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.736 3.264 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.121 4.121 14 H 0.101 0.899 15 C -0.167 4.167 16 C -0.008 4.008 17 N -0.323 5.323 18 C 0.358 3.642 19 O -0.395 6.395 20 C 0.002 3.998 21 C -0.163 4.163 22 C -0.051 4.051 23 C 0.276 3.724 24 F -0.162 7.162 25 F -0.167 7.167 26 N -0.196 5.196 27 C 0.011 3.989 28 N -0.193 5.193 29 C -0.004 4.004 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.188 0.812 40 H 0.156 0.844 41 H 0.228 0.772 42 H 0.095 0.905 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.264 2.964 25.916 26.288 hybrid contribution 0.727 -0.191 -1.329 1.527 sum 3.991 2.773 24.587 25.063 Atomic orbital electron populations 1.22440 0.99021 1.00918 1.00027 1.20151 0.91974 0.95140 0.85289 0.93283 1.42430 1.78176 1.10706 1.05287 1.19193 1.36661 0.93812 0.87284 0.91224 1.24733 1.02146 0.95942 0.98041 1.69658 1.50778 1.08626 1.28901 0.86225 0.77778 0.78587 0.83791 1.21736 1.21840 1.20828 1.22714 0.93229 1.00913 0.95248 0.89916 1.22778 0.97954 1.01464 0.94544 1.22177 0.83657 1.00904 0.94104 1.48440 1.11066 1.63240 1.09548 1.17277 0.82719 0.79167 0.85001 1.90864 1.37821 1.50211 1.60563 1.21761 0.89573 0.93196 0.95313 1.22696 1.00688 0.97493 0.95413 1.22196 0.95387 0.96269 0.91283 1.20050 0.88215 0.88873 0.75285 1.93063 1.93935 1.83094 1.46153 1.93074 1.79573 1.72669 1.71387 1.68004 0.99797 1.10271 1.41490 1.25161 0.94526 0.90873 0.88371 1.68682 1.30724 1.13441 1.06482 1.22480 0.96484 1.03064 0.78358 0.92772 0.93503 0.94303 0.78273 0.93509 0.89974 0.90419 0.90743 0.90879 0.81161 0.84356 0.77197 0.90529 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.27 37.16 0.34 -2.36 16 2 C 0.18 3.35 2.43 -67.93 -0.17 3.19 16 3 H 0.05 0.91 8.01 -51.93 -0.42 0.50 16 4 N -0.72 -17.26 4.97 -53.43 -0.27 -17.53 16 5 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 6 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 9 Si 0.90 22.27 29.55 -169.99 -5.02 17.25 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 C -0.10 -1.51 2.67 -88.35 -0.24 -1.75 16 14 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 15 C -0.13 -1.43 5.28 -24.90 -0.13 -1.56 16 16 C 0.11 1.25 5.42 -3.07 -0.02 1.23 16 17 N -0.59 -8.37 3.32 -171.25 -0.57 -8.94 16 18 C 0.57 8.54 7.86 -12.05 -0.09 8.44 16 19 O -0.52 -9.42 16.68 5.38 0.09 -9.33 16 20 C 0.15 1.77 6.75 -82.64 -0.56 1.21 16 21 C -0.14 -1.42 9.07 -38.90 -0.35 -1.78 16 22 C 0.10 0.86 6.61 -82.24 -0.54 0.32 16 23 C 0.33 2.27 5.74 36.01 0.21 2.48 16 24 F -0.18 -1.60 17.09 2.25 0.04 -1.57 16 25 F -0.19 -1.57 16.56 2.25 0.04 -1.53 16 26 N -0.48 -4.32 10.08 -10.81 -0.11 -4.43 16 27 C 0.30 2.34 12.28 -92.26 -1.13 1.21 16 28 N -0.48 -4.69 7.07 -11.14 -0.08 -4.77 16 29 C 0.12 1.91 6.24 -2.40 -0.01 1.89 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.51 7.27 -51.93 -0.38 0.13 16 33 H 0.38 9.86 7.80 -40.82 -0.32 9.55 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 36 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 37 H 0.07 0.77 7.44 -51.93 -0.39 0.39 16 38 H 0.07 0.73 7.56 -51.93 -0.39 0.33 16 39 H 0.17 1.66 7.37 -52.49 -0.39 1.27 16 40 H 0.14 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.21 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.08 1.30 7.99 -51.93 -0.41 0.88 16 43 H 0.09 1.69 8.03 -51.93 -0.42 1.27 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -32.98 369.15 -8.14 -41.12 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.61 Total: 5.85 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -2.94 Total: 5.52 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.30 Total: -62.88 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.08 Total: -3.09 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.98 -8.14 -41.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325418733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.962 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds