Wall clock time and date at job start Sat Apr 11 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47175 * 2 1 4 4 N 1.46502 * 109.47283 * 240.00327 * 2 1 3 5 5 C 1.36937 * 120.00065 * 85.00039 * 4 2 1 6 6 H 1.07996 * 120.00135 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00098 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99617 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00112 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46962 * 90.00010 * 9 7 5 11 11 H 1.48502 * 109.47287 * 209.99595 * 9 7 5 12 12 H 1.48497 * 109.47442 * 329.99761 * 9 7 5 13 13 C 1.52995 * 109.47055 * 120.00185 * 2 1 3 14 14 H 1.08994 * 110.88784 * 63.88112 * 13 2 1 15 15 C 1.55158 * 111.00364 * 299.99950 * 13 2 1 16 16 C 1.54323 * 102.94177 * 206.38958 * 15 13 2 17 17 N 1.47018 * 107.27523 * 22.19264 * 16 15 13 18 18 C 1.34776 * 125.65254 * 181.02639 * 17 16 15 19 19 O 1.21484 * 119.99993 * 180.02562 * 18 17 16 20 20 C 1.48453 * 119.99763 * 0.02562 * 18 17 16 21 21 C 1.39540 * 120.54700 * 179.97438 * 20 18 17 22 22 C 1.38762 * 118.25810 * 180.02562 * 21 20 18 23 23 C 1.50703 * 120.42183 * 179.97438 * 22 21 20 24 24 F 1.39899 * 109.47150 * 210.00090 * 23 22 21 25 25 F 1.39896 * 109.47285 * 330.00547 * 23 22 21 26 26 N 1.32200 * 119.15049 * 359.74937 * 22 21 20 27 27 C 1.31877 * 121.03800 * 0.51200 * 26 22 21 28 28 N 1.31588 * 121.91309 * 359.47173 * 27 26 22 29 29 C 1.47433 * 108.70052 * 1.28906 * 17 16 15 30 30 H 1.09001 * 109.46799 * 59.99971 * 1 2 3 31 31 H 1.09002 * 109.46750 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47215 * 299.99746 * 1 2 3 33 33 H 0.96997 * 119.99930 * 265.00207 * 4 2 1 34 34 H 0.96999 * 119.99822 * 179.97438 * 8 7 5 35 35 H 1.08999 * 110.72041 * 88.02618 * 15 13 2 36 36 H 1.08995 * 110.87209 * 324.81949 * 15 13 2 37 37 H 1.09005 * 109.88345 * 262.77730 * 16 15 13 38 38 H 1.09003 * 110.01445 * 141.68599 * 16 15 13 39 39 H 1.08000 * 120.86918 * 359.97438 * 21 20 18 40 40 H 1.09006 * 109.46795 * 90.00152 * 23 22 21 41 41 H 1.08002 * 119.04657 * 179.75987 * 27 26 22 42 42 H 1.09002 * 110.36728 * 94.48419 * 29 17 16 43 43 H 1.09000 * 110.36348 * 216.80187 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1492 -0.0074 -2.3758 6 1 1.8920 1.0404 -2.4243 7 6 2.6114 -0.6618 -3.5093 8 7 2.9245 -1.9389 -3.4502 9 14 2.7892 0.2700 -5.1185 10 1 4.1515 0.8550 -5.2038 11 1 2.5785 -0.6614 -6.2557 12 1 1.7792 1.3570 -5.1753 13 6 2.0400 -0.7213 1.2492 14 1 1.7469 -1.7710 1.2387 15 6 1.5425 -0.0178 2.5396 16 6 2.6244 -0.3900 3.5752 17 7 3.8422 -0.7378 2.8285 18 6 5.0090 -1.1384 3.3713 19 8 5.9541 -1.4005 2.6544 20 6 5.1392 -1.2594 4.8451 21 6 6.3416 -1.6736 5.4193 22 6 6.4104 -1.7707 6.8018 23 6 7.6848 -2.2138 7.4732 24 9 7.3775 -2.8738 8.6678 25 9 8.3806 -3.0827 6.6259 26 7 5.3452 -1.4653 7.5226 27 6 4.2221 -1.0817 6.9474 28 7 4.1110 -0.9752 5.6406 29 6 3.5776 -0.5697 1.3879 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6317 -1.1527 34 1 3.2471 -2.3963 -4.2424 35 1 0.5701 -0.4074 2.8408 36 1 1.4975 1.0623 2.4003 37 1 2.2944 -1.2452 4.1650 38 1 2.8211 0.4584 4.2306 39 1 7.1961 -1.9132 4.8037 40 1 8.3040 -1.3427 7.6882 41 1 3.3703 -0.8436 7.5672 42 1 3.8952 0.4191 1.0567 43 1 4.0880 -1.3443 0.8156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325418733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:42 Heat of formation + Delta-G solvation = -81.940812 kcal Electronic energy + Delta-G solvation = -29037.872831 eV Core-core repulsion = 24560.896398 eV Total energy + Delta-G solvation = -4476.976432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.14663 -48.16331 -42.57089 -40.97647 -39.15701 -36.87467 -35.56576 -34.24852 -33.73069 -32.04635 -30.02109 -29.78728 -28.86059 -26.61064 -25.83572 -25.03511 -23.88625 -22.90187 -21.21615 -21.07797 -19.50999 -19.27740 -18.85890 -18.66318 -18.05437 -17.54174 -17.09531 -16.82102 -16.76076 -16.68285 -16.12664 -15.80549 -15.56755 -15.38880 -15.07729 -14.95764 -14.49026 -14.48061 -14.22108 -14.06473 -13.99580 -13.62044 -13.38592 -13.14242 -12.91076 -12.79189 -12.62040 -12.40229 -12.25651 -12.18087 -12.07625 -11.98946 -11.76525 -11.65891 -11.50576 -11.32427 -11.09572 -10.92592 -10.57890 -9.79944 -8.97553 -7.91519 -5.18792 -0.90287 -0.54391 1.42075 1.46917 1.48416 1.53286 1.56262 2.03435 2.45318 2.56821 2.61004 2.81947 3.02509 3.27040 3.41882 3.50121 3.60434 3.69698 3.75835 3.82408 3.86164 4.09065 4.18170 4.31903 4.36767 4.45674 4.56780 4.66137 4.73324 4.86948 4.91282 4.98278 5.00709 5.08140 5.13116 5.23702 5.33467 5.42300 5.44763 5.55521 5.67104 6.26825 6.31006 6.56070 6.77603 7.36785 8.14785 8.35543 9.32196 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.019480 B = 0.002297 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.042429 B =12187.501010 C =13349.534524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 H 0.048 0.952 4 N -0.738 5.738 5 C -0.229 4.229 6 H 0.077 0.923 7 C -0.080 4.080 8 N -0.972 5.972 9 Si 0.967 3.033 10 H -0.292 1.292 11 H -0.299 1.299 12 H -0.267 1.267 13 C -0.092 4.092 14 H 0.075 0.925 15 C -0.116 4.116 16 C 0.116 3.884 17 N -0.592 5.592 18 C 0.567 3.433 19 O -0.566 6.566 20 C 0.138 3.862 21 C -0.147 4.147 22 C 0.105 3.895 23 C 0.329 3.671 24 F -0.192 7.192 25 F -0.197 7.197 26 N -0.486 5.486 27 C 0.305 3.695 28 N -0.478 5.478 29 C 0.121 3.879 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.370 0.630 34 H 0.248 0.752 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.166 0.834 40 H 0.185 0.815 41 H 0.253 0.747 42 H 0.065 0.935 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.957 4.538 28.937 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.071 3.929 3 H 0.066 0.934 4 N -0.378 5.378 5 C -0.361 4.361 6 H 0.095 0.905 7 C -0.272 4.272 8 N -0.623 5.623 9 Si 0.797 3.203 10 H -0.219 1.219 11 H -0.226 1.226 12 H -0.192 1.192 13 C -0.112 4.112 14 H 0.093 0.907 15 C -0.154 4.154 16 C -0.005 4.005 17 N -0.322 5.322 18 C 0.353 3.647 19 O -0.445 6.445 20 C -0.010 4.010 21 C -0.170 4.170 22 C -0.045 4.045 23 C 0.275 3.725 24 F -0.173 7.173 25 F -0.178 7.178 26 N -0.200 5.200 27 C 0.018 3.982 28 N -0.194 5.194 29 C -0.001 4.001 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.201 0.799 34 H 0.057 0.943 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.184 0.816 40 H 0.201 0.799 41 H 0.269 0.731 42 H 0.084 0.916 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.704 4.738 29.014 29.448 hybrid contribution 1.172 -0.694 -2.130 2.528 sum 2.875 4.044 26.884 27.339 Atomic orbital electron populations 1.22277 0.96889 1.00952 1.01159 1.20416 0.93252 0.94780 0.84461 0.93394 1.42673 1.78467 1.10242 1.06422 1.19594 1.34168 0.94107 0.88242 0.90500 1.25507 1.03454 0.96819 1.01402 1.69822 1.53040 1.10248 1.29205 0.85226 0.77749 0.77522 0.79829 1.21907 1.22601 1.19182 1.22525 0.92028 1.00673 0.95983 0.90683 1.22812 0.99092 1.01904 0.91558 1.22381 0.82007 1.02123 0.93974 1.48525 1.12081 1.62851 1.08772 1.17814 0.82165 0.78225 0.86453 1.90826 1.39367 1.52182 1.62133 1.21262 0.90964 0.95216 0.93565 1.22678 1.00188 0.97938 0.96164 1.22478 0.96167 0.95278 0.90625 1.20520 0.87873 0.89752 0.74362 1.93040 1.94052 1.83501 1.46701 1.93055 1.79672 1.73272 1.71806 1.68125 1.00096 1.10277 1.41522 1.26006 0.95227 0.89124 0.87810 1.68650 1.29889 1.13680 1.07216 1.22219 0.97337 1.00853 0.79707 0.94799 0.94016 0.89931 0.79885 0.94336 0.87122 0.89062 0.89522 0.88966 0.81608 0.79850 0.73145 0.91649 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.27 71.98 0.67 -4.07 16 2 C 0.18 6.38 2.43 44.99 0.11 6.49 16 3 H 0.05 1.73 8.01 -2.39 -0.02 1.71 16 4 N -0.74 -35.99 4.97 -322.94 -1.61 -37.60 16 5 C -0.23 -12.49 9.93 84.03 0.83 -11.66 16 6 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 7 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 8 N -0.97 -60.47 13.06 21.65 0.28 -60.19 16 9 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 10 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 11 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 C -0.09 -2.69 2.67 -9.32 -0.02 -2.71 16 14 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 15 C -0.12 -2.15 5.28 31.78 0.17 -1.98 16 16 C 0.12 2.23 5.42 86.73 0.47 2.70 16 17 N -0.59 -16.71 3.32 -814.03 -2.71 -19.42 16 18 C 0.57 17.34 7.86 86.97 0.68 18.02 16 19 O -0.57 -21.92 16.68 -3.67 -0.06 -21.99 16 20 C 0.14 3.15 6.75 42.00 0.28 3.43 16 21 C -0.15 -2.91 9.07 22.71 0.21 -2.70 16 22 C 0.10 1.66 6.61 42.63 0.28 1.94 16 23 C 0.33 3.87 5.74 71.24 0.41 4.28 16 24 F -0.19 -3.02 17.09 44.97 0.77 -2.25 16 25 F -0.20 -3.13 16.56 44.97 0.74 -2.39 16 26 N -0.49 -7.37 10.08 -188.12 -1.90 -9.26 16 27 C 0.31 3.75 12.28 180.92 2.22 5.97 16 28 N -0.48 -8.21 7.07 -189.15 -1.34 -9.55 16 29 C 0.12 4.10 6.24 86.93 0.54 4.64 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.84 7.27 -2.39 -0.02 1.82 16 33 H 0.37 19.87 7.80 -92.71 -0.72 19.14 16 34 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.11 1.53 8.11 -2.39 -0.02 1.51 16 36 H 0.09 1.52 8.04 -2.39 -0.02 1.50 16 37 H 0.09 1.51 7.44 -2.38 -0.02 1.49 16 38 H 0.09 1.48 7.56 -2.39 -0.02 1.47 16 39 H 0.17 3.37 7.37 -2.91 -0.02 3.35 16 40 H 0.18 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.25 0.77 8.06 -2.91 -0.02 0.75 16 42 H 0.07 2.32 7.99 -2.39 -0.02 2.30 16 43 H 0.05 1.92 8.03 -2.39 -0.02 1.90 16 Total: -1.00 -75.68 369.15 3.87 -71.82 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.33 Total: 21.92 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 7.32 Total: 20.20 kcal Atomic # 7 Polarization: -128.75 SS G_CDS: -7.26 Total: -136.02 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.06 Total: -21.99 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 1.51 Total: -4.64 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -75.68 3.87 -71.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325418733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.124 kcal (2) G-P(sol) polarization free energy of solvation -75.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds