Wall clock time and date at job start Sat Apr 11 2020 05:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47381 * 2 1 4 4 N 1.46506 * 109.47029 * 240.00319 * 2 1 3 5 5 C 1.36933 * 120.00134 * 85.00165 * 4 2 1 6 6 H 1.08002 * 119.99628 * 359.97438 * 5 4 2 7 7 C 1.38804 * 119.99878 * 180.02562 * 5 4 2 8 8 N 1.31625 * 120.00195 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00341 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46761 * 90.00251 * 9 7 5 11 11 H 1.48501 * 109.47292 * 210.00361 * 9 7 5 12 12 H 1.48500 * 109.47062 * 330.00405 * 9 7 5 13 13 C 1.52996 * 109.47223 * 120.00570 * 2 1 3 14 14 H 1.09000 * 110.91940 * 57.54802 * 13 2 1 15 15 C 1.55157 * 111.00814 * 181.45418 * 13 2 1 16 16 C 1.54325 * 102.94374 * 153.57356 * 15 13 2 17 17 N 1.47015 * 107.27065 * 337.80787 * 16 15 13 18 18 C 1.34778 * 125.64845 * 178.98781 * 17 16 15 19 19 O 1.21280 * 120.00070 * 179.97438 * 18 17 16 20 20 C 1.50696 * 119.99911 * 359.97438 * 18 17 16 21 21 C 1.52997 * 109.47331 * 180.02562 * 20 18 17 22 22 N 1.46504 * 109.47214 * 180.02562 * 21 20 18 23 23 C 1.35042 * 126.03659 * 125.00455 * 22 21 20 24 24 C 1.35371 * 107.73038 * 179.97438 * 23 22 21 25 25 Cl 1.73594 * 126.05231 * 180.02562 * 24 23 22 26 26 C 1.39939 * 107.90449 * 359.97438 * 24 23 22 27 27 N 1.30847 * 108.20992 * 359.71919 * 26 24 23 28 28 C 1.47425 * 108.70882 * 358.94051 * 17 16 15 29 29 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46833 * 299.99806 * 1 2 3 31 31 H 1.08998 * 109.46757 * 59.99711 * 1 2 3 32 32 H 0.97007 * 119.99750 * 265.00016 * 4 2 1 33 33 H 0.96994 * 120.00837 * 179.97438 * 8 7 5 34 34 H 1.08996 * 110.71539 * 271.93666 * 15 13 2 35 35 H 1.08993 * 110.71794 * 35.20691 * 15 13 2 36 36 H 1.09000 * 109.88274 * 97.22627 * 16 15 13 37 37 H 1.08997 * 109.87805 * 218.23167 * 16 15 13 38 38 H 1.09005 * 109.47187 * 299.99947 * 20 18 17 39 39 H 1.09004 * 109.47639 * 60.00063 * 20 18 17 40 40 H 1.08998 * 109.47224 * 300.00057 * 21 20 18 41 41 H 1.09000 * 109.47427 * 60.00103 * 21 20 18 42 42 H 1.08000 * 126.14210 * 359.97125 * 23 22 21 43 43 H 1.08000 * 125.88964 * 180.02562 * 26 24 23 44 44 H 1.08999 * 110.36633 * 265.29871 * 28 17 16 45 45 H 1.08996 * 110.37033 * 142.96251 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1963 5 6 2.1492 -0.0074 -2.3758 6 1 1.8920 1.0404 -2.4243 7 6 2.6113 -0.6619 -3.5093 8 7 2.7376 -0.0051 -4.6430 9 14 3.0556 -2.4743 -3.4255 10 1 1.8581 -3.2926 -3.7444 11 1 4.1306 -2.7664 -4.4075 12 1 3.5311 -2.8048 -2.0581 13 6 2.0401 -0.7214 1.2491 14 1 1.6547 -1.7399 1.2949 15 6 3.5906 -0.7104 1.3037 16 6 3.8841 -0.8152 2.8151 17 7 2.6860 -0.3457 3.5260 18 6 2.5343 -0.2995 4.8644 19 8 1.4977 0.1088 5.3435 20 6 3.6529 -0.7550 5.7656 21 6 3.2258 -0.6009 7.2266 22 7 4.3135 -1.0432 8.1027 23 6 4.8841 -0.3182 9.0889 24 6 5.8454 -1.0821 9.6588 25 17 6.8744 -0.6146 10.9764 26 6 5.8622 -2.3159 8.9986 27 7 4.9403 -2.2955 8.0703 28 6 1.6781 0.0674 2.5324 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 2.2491 -1.6318 -1.1527 33 1 3.0609 -0.4623 -5.4350 34 1 4.0012 -1.5679 0.7707 35 1 3.9841 0.2216 0.8981 36 1 4.0909 -1.8517 3.0816 37 1 4.7390 -0.1893 3.0709 38 1 3.8800 -1.8016 5.5623 39 1 4.5392 -0.1482 5.5799 40 1 2.9984 0.4454 7.4303 41 1 2.3397 -1.2080 7.4121 42 1 4.6208 0.6901 9.3721 43 1 6.5191 -3.1439 9.2207 44 1 1.7432 1.1399 2.3494 45 1 0.6779 -0.2004 2.8728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325469456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:36 Heat of formation + Delta-G solvation = 49.414953 kcal Electronic energy + Delta-G solvation = -26408.562874 eV Core-core repulsion = 22489.079135 eV Total energy + Delta-G solvation = -3919.483739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.74275 -40.30853 -38.15523 -36.83468 -35.47124 -34.69589 -32.54769 -31.28754 -30.69985 -29.91430 -29.60313 -27.75699 -25.48754 -24.09718 -22.81068 -21.68874 -21.53094 -21.20817 -19.93354 -19.32943 -18.17713 -17.64485 -16.93428 -16.54820 -16.30510 -15.39190 -15.31449 -14.92006 -14.58285 -14.38126 -13.99593 -13.81651 -13.70050 -13.61223 -13.25622 -12.95775 -12.75155 -12.68131 -12.52297 -12.30712 -12.16525 -11.96982 -11.89995 -11.72160 -11.62138 -11.07442 -10.90702 -10.87786 -10.64506 -10.57018 -10.32386 -10.19594 -10.03801 -9.96770 -9.63437 -8.99610 -8.88780 -8.81883 -7.33340 -5.81632 -3.17592 1.25030 1.47982 2.13151 2.30623 2.34075 2.79583 3.31255 3.35127 3.41271 3.96510 4.14559 4.27752 4.33938 4.49875 4.53826 4.60694 4.70366 4.80105 4.89980 4.93585 5.10142 5.13563 5.23588 5.29191 5.34832 5.43134 5.51824 5.55958 5.73246 5.77192 5.87482 5.88467 6.02170 6.04994 6.16631 6.26943 6.31572 6.36665 6.43260 6.72615 6.95128 7.05641 7.29967 7.86016 7.94020 8.37131 9.15290 9.87700 10.07284 11.36626 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.001819 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.304449 B =15391.512141 C =16127.491981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.190 3.810 3 H 0.058 0.942 4 N -0.746 5.746 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.884 3.116 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.107 4.107 14 H 0.080 0.920 15 C -0.119 4.119 16 C 0.096 3.904 17 N -0.613 5.613 18 C 0.533 3.467 19 O -0.547 6.547 20 C -0.150 4.150 21 C 0.151 3.849 22 N -0.363 5.363 23 C 0.077 3.923 24 C -0.191 4.191 25 Cl -0.044 7.044 26 C 0.064 3.936 27 N -0.280 5.280 28 C 0.114 3.886 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.360 0.640 33 H 0.259 0.741 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.184 0.816 43 H 0.192 0.808 44 H 0.073 0.927 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.906 -1.795 29.355 29.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.080 3.920 3 H 0.076 0.924 4 N -0.389 5.389 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.581 5.581 9 Si 0.715 3.285 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.099 0.901 15 C -0.157 4.157 16 C -0.027 4.027 17 N -0.346 5.346 18 C 0.321 3.679 19 O -0.426 6.426 20 C -0.190 4.190 21 C 0.030 3.970 22 N -0.145 5.145 23 C -0.071 4.071 24 C -0.230 4.230 25 Cl -0.016 7.016 26 C -0.123 4.123 27 N -0.101 5.101 28 C -0.008 4.008 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.128 0.872 41 H 0.118 0.882 42 H 0.201 0.799 43 H 0.208 0.792 44 H 0.091 0.909 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.756 -1.955 28.565 29.024 hybrid contribution 0.942 -0.868 0.568 1.401 sum 5.698 -2.823 29.133 29.819 Atomic orbital electron populations 1.22457 0.98665 1.01015 1.00660 1.20102 0.92026 0.95436 0.84389 0.92386 1.42726 1.79762 1.09414 1.06978 1.19043 1.37011 0.95599 0.85517 0.89211 1.24666 1.01467 0.97419 0.95562 1.69695 1.52602 1.35551 1.00264 0.86564 0.78114 0.86910 0.76938 1.21189 1.21828 1.20376 1.22727 0.95379 1.00114 0.94482 0.90137 1.22610 0.96223 1.04359 0.92492 1.22207 0.87408 0.99393 0.93688 1.48540 1.17742 1.63509 1.04820 1.19866 0.88356 0.78337 0.81335 1.90730 1.29555 1.47851 1.74432 1.21854 0.98625 1.05336 0.93201 1.21549 0.86218 1.02158 0.87044 1.48600 1.29010 1.10377 1.26484 1.22318 0.94841 0.98747 0.91242 1.20793 1.03459 0.97287 1.01448 1.98334 1.65921 1.92021 1.45316 1.23919 0.97520 0.97377 0.93438 1.77499 1.10555 0.99850 1.22183 1.22331 0.92204 0.99267 0.86983 0.93542 0.94052 0.92183 0.80705 0.93056 0.89769 0.89685 0.91396 0.91344 0.87296 0.88205 0.87243 0.88217 0.79868 0.79156 0.90890 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 9.34 37.16 0.35 -2.39 16 2 C 0.19 3.26 2.41 -67.93 -0.16 3.10 16 3 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 4 N -0.75 -16.14 4.62 -53.42 -0.25 -16.39 16 5 C -0.24 -6.44 10.41 -15.06 -0.16 -6.60 16 6 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 8 N -0.93 -28.50 13.97 55.49 0.78 -27.73 16 9 Si 0.88 21.26 27.74 -169.99 -4.71 16.55 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.14 6.52 56.52 0.37 -5.77 16 13 C -0.11 -1.46 2.62 -88.47 -0.23 -1.69 16 14 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.12 -1.49 6.13 -24.90 -0.15 -1.65 16 16 C 0.10 0.95 6.49 -3.07 -0.02 0.93 16 17 N -0.61 -6.95 3.33 -170.52 -0.57 -7.52 16 18 C 0.53 5.96 7.85 -10.99 -0.09 5.87 16 19 O -0.55 -7.74 16.24 5.56 0.09 -7.65 16 20 C -0.15 -1.19 5.08 -27.89 -0.14 -1.33 16 21 C 0.15 1.11 5.80 -4.04 -0.02 1.09 16 22 N -0.36 -2.94 3.68 -61.33 -0.23 -3.17 16 23 C 0.08 0.53 11.43 -17.16 -0.20 0.34 16 24 C -0.19 -1.47 6.65 -39.97 -0.27 -1.73 16 25 Cl -0.04 -0.31 29.30 -51.86 -1.52 -1.83 16 26 C 0.06 0.51 12.02 -17.33 -0.21 0.30 16 27 N -0.28 -2.67 12.42 30.64 0.38 -2.29 16 28 C 0.11 1.43 5.56 -2.52 -0.01 1.42 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.36 7.71 5.66 -40.82 -0.23 7.48 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.11 0.66 8.03 -51.93 -0.42 0.24 16 41 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 42 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.19 1.02 8.06 -52.49 -0.42 0.59 16 44 H 0.07 0.91 8.00 -51.93 -0.42 0.50 16 45 H 0.08 1.03 7.96 -51.93 -0.41 0.62 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -32.55 388.22 -8.53 -41.08 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.94 Total: 5.41 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -1.41 Total: -2.30 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.12 Total: -57.10 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.09 Total: -7.65 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.71 Total: 16.55 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.52 Total: -1.83 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.55 -8.53 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325469456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.495 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds