Wall clock time and date at job start Sat Apr 11 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47381 * 2 1 4 4 N 1.46506 * 109.47029 * 240.00319 * 2 1 3 5 5 C 1.36933 * 120.00134 * 85.00165 * 4 2 1 6 6 H 1.08002 * 119.99628 * 359.97438 * 5 4 2 7 7 C 1.38804 * 119.99878 * 180.02562 * 5 4 2 8 8 N 1.31625 * 120.00195 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00341 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46761 * 90.00251 * 9 7 5 11 11 H 1.48501 * 109.47292 * 210.00361 * 9 7 5 12 12 H 1.48500 * 109.47062 * 330.00405 * 9 7 5 13 13 C 1.52996 * 109.47223 * 120.00570 * 2 1 3 14 14 H 1.09000 * 110.91940 * 57.54802 * 13 2 1 15 15 C 1.55157 * 111.00814 * 181.45418 * 13 2 1 16 16 C 1.54325 * 102.94374 * 153.57356 * 15 13 2 17 17 N 1.47015 * 107.27065 * 337.80787 * 16 15 13 18 18 C 1.34778 * 125.64845 * 178.98781 * 17 16 15 19 19 O 1.21280 * 120.00070 * 179.97438 * 18 17 16 20 20 C 1.50696 * 119.99911 * 359.97438 * 18 17 16 21 21 C 1.52997 * 109.47331 * 180.02562 * 20 18 17 22 22 N 1.46504 * 109.47214 * 180.02562 * 21 20 18 23 23 C 1.35042 * 126.03659 * 125.00455 * 22 21 20 24 24 C 1.35371 * 107.73038 * 179.97438 * 23 22 21 25 25 Cl 1.73594 * 126.05231 * 180.02562 * 24 23 22 26 26 C 1.39939 * 107.90449 * 359.97438 * 24 23 22 27 27 N 1.30847 * 108.20992 * 359.71919 * 26 24 23 28 28 C 1.47425 * 108.70882 * 358.94051 * 17 16 15 29 29 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46833 * 299.99806 * 1 2 3 31 31 H 1.08998 * 109.46757 * 59.99711 * 1 2 3 32 32 H 0.97007 * 119.99750 * 265.00016 * 4 2 1 33 33 H 0.96994 * 120.00837 * 179.97438 * 8 7 5 34 34 H 1.08996 * 110.71539 * 271.93666 * 15 13 2 35 35 H 1.08993 * 110.71794 * 35.20691 * 15 13 2 36 36 H 1.09000 * 109.88274 * 97.22627 * 16 15 13 37 37 H 1.08997 * 109.87805 * 218.23167 * 16 15 13 38 38 H 1.09005 * 109.47187 * 299.99947 * 20 18 17 39 39 H 1.09004 * 109.47639 * 60.00063 * 20 18 17 40 40 H 1.08998 * 109.47224 * 300.00057 * 21 20 18 41 41 H 1.09000 * 109.47427 * 60.00103 * 21 20 18 42 42 H 1.08000 * 126.14210 * 359.97125 * 23 22 21 43 43 H 1.08000 * 125.88964 * 180.02562 * 26 24 23 44 44 H 1.08999 * 110.36633 * 265.29871 * 28 17 16 45 45 H 1.08996 * 110.37033 * 142.96251 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1963 5 6 2.1492 -0.0074 -2.3758 6 1 1.8920 1.0404 -2.4243 7 6 2.6113 -0.6619 -3.5093 8 7 2.7376 -0.0051 -4.6430 9 14 3.0556 -2.4743 -3.4255 10 1 1.8581 -3.2926 -3.7444 11 1 4.1306 -2.7664 -4.4075 12 1 3.5311 -2.8048 -2.0581 13 6 2.0401 -0.7214 1.2491 14 1 1.6547 -1.7399 1.2949 15 6 3.5906 -0.7104 1.3037 16 6 3.8841 -0.8152 2.8151 17 7 2.6860 -0.3457 3.5260 18 6 2.5343 -0.2995 4.8644 19 8 1.4977 0.1088 5.3435 20 6 3.6529 -0.7550 5.7656 21 6 3.2258 -0.6009 7.2266 22 7 4.3135 -1.0432 8.1027 23 6 4.8841 -0.3182 9.0889 24 6 5.8454 -1.0821 9.6588 25 17 6.8744 -0.6146 10.9764 26 6 5.8622 -2.3159 8.9986 27 7 4.9403 -2.2955 8.0703 28 6 1.6781 0.0674 2.5324 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 2.2491 -1.6318 -1.1527 33 1 3.0609 -0.4623 -5.4350 34 1 4.0012 -1.5679 0.7707 35 1 3.9841 0.2216 0.8981 36 1 4.0909 -1.8517 3.0816 37 1 4.7390 -0.1893 3.0709 38 1 3.8800 -1.8016 5.5623 39 1 4.5392 -0.1482 5.5799 40 1 2.9984 0.4454 7.4303 41 1 2.3397 -1.2080 7.4121 42 1 4.6208 0.6901 9.3721 43 1 6.5191 -3.1439 9.2207 44 1 1.7432 1.1399 2.3494 45 1 0.6779 -0.2004 2.8728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325469456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:35 Heat of formation + Delta-G solvation = 29.147643 kcal Electronic energy + Delta-G solvation = -26409.441731 eV Core-core repulsion = 22489.079135 eV Total energy + Delta-G solvation = -3920.362595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.29679 -41.22698 -39.23675 -37.37231 -36.92636 -35.32101 -34.28875 -32.43852 -31.54563 -31.12785 -30.43598 -28.88084 -26.45422 -25.48896 -23.94721 -22.76363 -22.22314 -21.85569 -21.31575 -20.17267 -19.56473 -18.77332 -17.73112 -17.51604 -17.11308 -16.58944 -16.12193 -15.97864 -15.52786 -15.40317 -15.12574 -14.90177 -14.69844 -14.51087 -14.23356 -14.14743 -13.94956 -13.78055 -13.54548 -13.46660 -13.33198 -12.96232 -12.83719 -12.74797 -12.47272 -12.41666 -12.27971 -11.96700 -11.91225 -11.71772 -11.69228 -11.45737 -11.39953 -11.09269 -10.95433 -10.60605 -9.72506 -9.43757 -9.28803 -7.98100 -5.30900 0.71283 0.93856 1.39673 1.43815 1.49334 1.51032 1.58258 1.72454 1.99371 2.51894 3.25256 3.34186 3.44260 3.54291 3.63201 3.74780 3.82991 3.87195 3.98557 4.09829 4.25408 4.29452 4.34529 4.38385 4.48332 4.56373 4.60006 4.66419 4.68222 4.72662 4.78817 4.86881 4.96242 5.02484 5.12997 5.15366 5.29294 5.35866 5.36345 5.57715 5.80177 5.81985 6.25516 6.43538 6.50242 6.99757 7.12611 7.88567 8.08098 9.23515 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.001819 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.304449 B =15391.512141 C =16127.491981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.185 3.815 3 H 0.046 0.954 4 N -0.745 5.745 5 C -0.221 4.221 6 H 0.055 0.945 7 C -0.067 4.067 8 N -0.987 5.987 9 Si 0.953 3.047 10 H -0.285 1.285 11 H -0.301 1.301 12 H -0.243 1.243 13 C -0.098 4.098 14 H 0.087 0.913 15 C -0.120 4.120 16 C 0.103 3.897 17 N -0.615 5.615 18 C 0.534 3.466 19 O -0.580 6.580 20 C -0.136 4.136 21 C 0.153 3.847 22 N -0.367 5.367 23 C 0.081 3.919 24 C -0.205 4.205 25 Cl -0.042 7.042 26 C 0.062 3.938 27 N -0.311 5.311 28 C 0.119 3.881 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.365 0.635 33 H 0.255 0.745 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.211 0.789 43 H 0.209 0.791 44 H 0.070 0.930 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.783 -3.063 32.037 32.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.077 3.923 3 H 0.064 0.936 4 N -0.389 5.389 5 C -0.352 4.352 6 H 0.073 0.927 7 C -0.258 4.258 8 N -0.638 5.638 9 Si 0.781 3.219 10 H -0.212 1.212 11 H -0.228 1.228 12 H -0.167 1.167 13 C -0.118 4.118 14 H 0.105 0.895 15 C -0.158 4.158 16 C -0.019 4.019 17 N -0.348 5.348 18 C 0.323 3.677 19 O -0.460 6.460 20 C -0.176 4.176 21 C 0.032 3.968 22 N -0.149 5.149 23 C -0.067 4.067 24 C -0.243 4.243 25 Cl -0.014 7.014 26 C -0.125 4.125 27 N -0.132 5.132 28 C -0.004 4.004 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.199 0.801 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.109 0.891 42 H 0.228 0.772 43 H 0.226 0.774 44 H 0.089 0.911 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.633 -3.233 31.317 31.983 hybrid contribution 0.616 -0.349 -0.197 0.735 sum 6.249 -3.582 31.120 31.943 Atomic orbital electron populations 1.22344 0.97721 1.01339 1.00680 1.20274 0.92556 0.95017 0.84429 0.93557 1.42682 1.79882 1.09571 1.06747 1.18976 1.34620 0.94334 0.87266 0.92717 1.25476 1.02676 1.02445 0.95195 1.69888 1.54992 1.37704 1.01201 0.85440 0.77372 0.80768 0.78356 1.21186 1.22810 1.16713 1.22516 0.96343 0.99918 0.92976 0.89494 1.22577 0.95041 1.03575 0.94597 1.22231 0.87279 1.01013 0.91395 1.48587 1.17814 1.63461 1.04919 1.20357 0.88588 0.77484 0.81257 1.90719 1.31087 1.49330 1.74906 1.21758 0.97650 1.05505 0.92687 1.21544 0.85725 1.02803 0.86701 1.48632 1.29153 1.10226 1.26873 1.22797 0.93981 0.99596 0.90301 1.20930 1.04028 0.97534 1.01853 1.98334 1.65907 1.91979 1.45223 1.24295 0.97215 0.98068 0.92893 1.77456 1.11562 1.00878 1.23351 1.22158 0.92541 0.98923 0.86742 0.93022 0.91259 0.94936 0.80129 0.93584 0.89965 0.91059 0.89488 0.89338 0.87038 0.86665 0.85808 0.89144 0.77196 0.77433 0.91143 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.11 9.34 71.98 0.67 -4.44 16 2 C 0.19 6.22 2.41 44.99 0.11 6.33 16 3 H 0.05 1.67 8.04 -2.39 -0.02 1.65 16 4 N -0.75 -31.69 4.62 -322.94 -1.49 -33.19 16 5 C -0.22 -11.96 10.41 84.03 0.87 -11.08 16 6 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 7 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 8 N -0.99 -62.18 13.97 21.65 0.30 -61.87 16 9 Si 0.95 43.73 27.74 68.60 1.90 45.64 16 10 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 12 H -0.24 -9.64 6.52 99.48 0.65 -8.99 16 13 C -0.10 -2.47 2.62 -9.40 -0.02 -2.49 16 14 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 15 C -0.12 -2.73 6.13 31.78 0.19 -2.53 16 16 C 0.10 1.69 6.49 86.73 0.56 2.26 16 17 N -0.62 -12.32 3.33 -811.80 -2.70 -15.02 16 18 C 0.53 10.64 7.85 87.66 0.69 11.33 16 19 O -0.58 -15.43 16.24 -3.03 -0.05 -15.48 16 20 C -0.14 -1.77 5.08 29.85 0.15 -1.62 16 21 C 0.15 1.91 5.80 86.38 0.50 2.41 16 22 N -0.37 -5.15 3.68 -347.94 -1.28 -6.43 16 23 C 0.08 0.93 11.43 83.54 0.95 1.89 16 24 C -0.20 -2.75 6.65 22.02 0.15 -2.60 16 25 Cl -0.04 -0.54 29.30 -2.72 -0.08 -0.62 16 26 C 0.06 0.88 12.02 85.25 1.02 1.90 16 27 N -0.31 -5.38 12.42 -56.97 -0.71 -6.09 16 28 C 0.12 2.75 5.56 86.86 0.48 3.23 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.80 7.45 -2.39 -0.02 1.78 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.37 14.84 5.66 -92.70 -0.52 14.31 16 33 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 1.82 8.04 -2.39 -0.02 1.81 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.12 1.18 8.03 -2.39 -0.02 1.16 16 41 H 0.09 1.31 8.10 -2.39 -0.02 1.29 16 42 H 0.21 1.03 8.06 -2.91 -0.02 1.01 16 43 H 0.21 1.88 8.06 -2.91 -0.02 1.85 16 44 H 0.07 1.66 8.00 -2.39 -0.02 1.64 16 45 H 0.08 1.82 7.96 -2.39 -0.02 1.80 16 Total: -1.00 -71.88 388.22 3.11 -68.77 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.41 Total: 23.07 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 6.80 Total: 1.22 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -5.88 Total: -122.60 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.05 Total: -15.48 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.90 Total: 45.64 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -71.88 3.11 -68.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325469456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.917 kcal (2) G-P(sol) polarization free energy of solvation -71.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds