Wall clock time and date at job start Sat Apr 11 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35722 * 117.00209 * 2 1 4 4 C 1.41856 * 126.78843 * 179.71030 * 3 2 1 5 5 C 1.36661 * 103.81332 * 180.26040 * 4 3 2 6 6 C 1.47539 * 126.88058 * 179.97438 * 5 4 3 7 7 O 1.21583 * 119.99684 * 353.13812 * 6 5 4 8 8 N 1.34778 * 120.00337 * 173.14176 * 6 5 4 9 9 C 1.46498 * 119.99764 * 3.82936 * 8 6 5 10 10 C 1.46495 * 119.99951 * 183.83034 * 8 6 5 11 11 C 1.52999 * 109.47251 * 90.00136 * 10 8 6 12 12 H 1.09001 * 109.47053 * 64.99656 * 11 10 8 13 13 C 1.52997 * 109.47130 * 184.99841 * 11 10 8 14 14 N 1.46903 * 109.46919 * 304.99485 * 11 10 8 15 15 C 1.46895 * 110.99934 * 154.99783 * 14 11 10 16 16 C 1.50699 * 109.47213 * 180.02562 * 15 14 11 17 17 O 1.21289 * 119.99983 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99722 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99823 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99734 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00223 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99917 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00040 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46813 * 90.00168 * 23 21 19 25 25 H 1.48497 * 109.47232 * 209.99899 * 23 21 19 26 26 H 1.48493 * 109.47336 * 330.00415 * 23 21 19 27 27 O 1.34659 * 106.23861 * 359.97438 * 5 4 3 28 28 N 1.20870 * 111.63908 * 359.97438 * 27 5 4 29 29 H 1.08997 * 109.46941 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47220 * 300.00134 * 1 2 3 31 31 H 1.09002 * 109.46921 * 60.00449 * 1 2 3 32 32 H 1.07999 * 128.09174 * 0.25721 * 4 3 2 33 33 H 1.08997 * 109.47140 * 84.02909 * 9 8 6 34 34 H 1.08994 * 109.47258 * 204.03182 * 9 8 6 35 35 H 1.09006 * 109.47231 * 324.03664 * 9 8 6 36 36 H 1.09008 * 109.46981 * 209.99987 * 10 8 6 37 37 H 1.08996 * 109.47277 * 329.99527 * 10 8 6 38 38 H 1.09002 * 109.47068 * 180.02562 * 13 11 10 39 39 H 1.09005 * 109.47143 * 299.99978 * 13 11 10 40 40 H 1.09001 * 109.47304 * 59.99968 * 13 11 10 41 41 H 1.00898 * 110.99846 * 31.04958 * 14 11 10 42 42 H 1.09003 * 109.47519 * 300.01001 * 15 14 11 43 43 H 1.09009 * 109.47101 * 59.99897 * 15 14 11 44 44 H 0.96999 * 120.00366 * 359.97438 * 18 16 15 45 45 H 0.97004 * 120.00192 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4432 1.4504 0.0057 5 6 3.5391 2.8136 0.0091 6 6 4.7785 3.6140 0.0160 7 8 5.8558 3.0653 0.1451 8 7 4.7166 4.9534 -0.1208 9 6 3.4155 5.6230 -0.1920 10 6 5.9503 5.7396 -0.1982 11 6 6.3830 5.8670 -1.6602 12 1 5.6389 6.4429 -2.2105 13 6 7.7348 6.5798 -1.7318 14 7 6.5032 4.5285 -2.2537 15 6 6.3272 4.5811 -3.7111 16 6 6.4563 3.1929 -4.2831 17 8 6.6730 2.2522 -3.5488 18 7 6.3308 2.9968 -5.6106 19 6 6.4477 1.7337 -6.1310 20 1 6.6408 0.8961 -5.4771 21 6 6.3179 1.5314 -7.4995 22 7 6.0825 2.5505 -8.2949 23 14 6.4779 -0.1894 -8.2085 24 1 5.1428 -0.8391 -8.2370 25 1 7.0182 -0.1076 -9.5893 26 1 7.3997 -0.9895 -7.3628 27 8 2.2759 3.2801 0.0048 28 7 1.4686 2.3805 -0.0010 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.2442 0.7260 0.0072 33 1 3.0415 5.7984 0.8167 34 1 3.5252 6.5759 -0.7096 35 1 2.7118 4.9929 -0.7359 36 1 5.7752 6.7323 0.2167 37 1 6.7350 5.2413 0.3709 38 1 8.0429 6.6710 -2.7734 39 1 7.6457 7.5730 -1.2914 40 1 8.4789 6.0038 -1.1815 41 1 5.8481 3.8865 -1.8333 42 1 5.3395 4.9793 -3.9437 43 1 7.0906 5.2263 -4.1462 44 1 6.1571 3.7490 -6.1978 45 1 5.9923 2.4093 -9.2504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331427561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:57 Heat of formation + Delta-G solvation = -17.108405 kcal Electronic energy + Delta-G solvation = -30446.859387 eV Core-core repulsion = 26083.781814 eV Total energy + Delta-G solvation = -4363.077573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.15243 -40.33496 -39.06787 -38.21224 -36.83203 -35.15184 -33.82621 -33.38017 -32.12979 -31.23572 -30.76682 -27.91189 -27.71870 -26.59246 -26.30010 -24.04884 -23.59075 -23.11684 -20.95287 -20.19867 -19.24697 -18.43936 -18.16909 -17.82571 -17.13319 -16.64184 -16.57220 -16.15401 -15.77872 -15.54144 -15.19338 -15.02172 -14.56470 -14.41102 -14.10592 -13.80300 -13.77280 -13.38406 -13.37509 -12.81581 -12.58957 -12.46520 -12.41764 -12.12243 -12.07531 -11.82092 -11.63788 -11.62786 -11.53272 -11.36239 -11.07318 -10.86693 -10.39624 -10.35350 -10.16673 -9.98566 -9.51948 -9.45282 -8.96209 -8.34994 -7.96898 -7.89212 -6.36665 -3.76920 0.61220 1.93946 2.29176 2.44822 2.81526 3.00546 3.21280 3.29363 3.36252 3.88925 3.97550 4.13305 4.31400 4.41878 4.64300 4.79754 4.83031 4.83671 4.88863 5.01931 5.03678 5.15048 5.21189 5.27405 5.28205 5.32062 5.42865 5.51588 5.61931 5.71183 5.75181 5.84014 6.02464 6.04346 6.12565 6.31921 6.41677 6.71279 6.88814 7.33288 7.60313 7.64936 7.79158 7.92391 8.12359 8.67865 9.23839 9.60403 10.12927 10.81347 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007867 B = 0.003903 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.176963 B = 7172.802356 C = 9963.761261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.279 6.279 3 C 0.208 3.792 4 C -0.142 4.142 5 C -0.060 4.060 6 C 0.596 3.404 7 O -0.473 6.473 8 N -0.611 5.611 9 C 0.069 3.931 10 C 0.113 3.887 11 C 0.064 3.936 12 H 0.043 0.957 13 C -0.138 4.138 14 N -0.658 5.658 15 C 0.049 3.951 16 C 0.440 3.560 17 O -0.575 6.575 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.904 5.904 23 Si 0.929 3.071 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.269 1.269 27 O 0.113 5.887 28 N -0.395 5.395 29 H 0.107 0.893 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.193 0.807 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.348 0.652 42 H 0.038 0.962 43 H 0.086 0.914 44 H 0.391 0.609 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.692 8.699 17.475 21.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.185 6.185 3 C 0.011 3.989 4 C -0.164 4.164 5 C -0.126 4.126 6 C 0.381 3.619 7 O -0.345 6.345 8 N -0.346 5.346 9 C -0.074 4.074 10 C -0.009 4.009 11 C -0.047 4.047 12 H 0.061 0.939 13 C -0.196 4.196 14 N -0.296 5.296 15 C -0.084 4.084 16 C 0.225 3.775 17 O -0.459 6.459 18 N -0.203 5.203 19 C -0.426 4.426 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.546 5.546 23 Si 0.756 3.244 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 O 0.049 5.951 28 N -0.121 5.121 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.211 0.789 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.172 0.828 42 H 0.056 0.944 43 H 0.104 0.896 44 H 0.224 0.776 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.448 7.858 17.822 21.648 hybrid contribution -0.797 -0.552 -1.128 1.488 sum -10.244 7.305 16.693 20.904 Atomic orbital electron populations 1.23102 0.76631 1.04317 1.02361 1.86247 1.22711 1.20321 1.89206 1.21862 0.90621 0.85784 1.00624 1.22280 0.94611 0.95067 1.04471 1.23937 0.86854 0.93871 1.07941 1.16628 0.85467 0.81705 0.78106 1.91012 1.26358 1.70208 1.46892 1.47770 1.08462 1.05708 1.72658 1.22091 0.83751 0.98804 1.02752 1.21902 0.85873 0.95862 0.97275 1.21972 0.97324 0.91406 0.94019 0.93892 1.21743 0.96492 0.98683 1.02692 1.60192 1.59346 1.07190 1.02853 1.21744 0.99853 0.97453 0.89307 1.19843 0.84520 0.89835 0.83261 1.90552 1.53363 1.43103 1.58856 1.41858 1.63010 1.10016 1.05444 1.19707 1.45567 0.85989 0.91362 0.87970 1.25235 0.97429 0.99323 0.95977 1.69614 1.49547 1.30539 1.04855 0.85875 0.78580 0.81919 0.78041 1.20504 1.20938 1.19372 1.85069 1.11899 1.29263 1.68913 1.73922 1.16272 0.96862 1.25000 0.87471 0.92246 0.92032 0.78950 0.91600 0.90027 0.90063 0.89171 0.88240 0.92159 0.92735 0.91518 0.82811 0.94401 0.89572 0.77566 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.73 101.05 1.08 1.35 16 2 O -0.28 -3.54 10.57 -18.87 -0.20 -3.74 16 3 C 0.21 2.87 8.00 -16.72 -0.13 2.74 16 4 C -0.14 -2.01 10.98 -38.77 -0.43 -2.44 16 5 C -0.06 -0.83 6.89 -36.36 -0.25 -1.08 16 6 C 0.60 8.58 5.90 -12.47 -0.07 8.50 16 7 O -0.47 -8.44 15.32 5.29 0.08 -8.36 16 8 N -0.61 -6.80 2.66 -182.82 -0.49 -7.29 16 9 C 0.07 0.54 9.69 59.85 0.58 1.12 16 10 C 0.11 1.16 5.19 -4.05 -0.02 1.14 16 11 C 0.06 0.79 2.95 -67.71 -0.20 0.59 16 12 H 0.04 0.49 7.80 -51.93 -0.40 0.09 16 13 C -0.14 -1.51 9.41 37.16 0.35 -1.16 16 14 N -0.66 -11.69 5.87 -107.99 -0.63 -12.32 16 15 C 0.05 0.93 5.96 -4.98 -0.03 0.90 16 16 C 0.44 11.00 7.82 -10.98 -0.09 10.91 16 17 O -0.58 -16.58 15.78 5.55 0.09 -16.50 16 18 N -0.57 -14.90 5.29 -10.96 -0.06 -14.96 16 19 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 20 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -25.10 13.05 55.50 0.72 -24.38 16 23 Si 0.93 21.62 29.55 -169.99 -5.02 16.59 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 O 0.11 1.41 7.98 15.51 0.12 1.53 16 28 N -0.39 -5.25 11.50 30.47 0.35 -4.89 16 29 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.19 2.62 8.06 -52.49 -0.42 2.19 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.48 8.03 -51.93 -0.42 0.06 16 35 H 0.08 0.73 5.42 -51.93 -0.28 0.44 16 36 H 0.09 0.60 8.07 -51.92 -0.42 0.18 16 37 H 0.10 1.17 7.37 -51.93 -0.38 0.79 16 38 H 0.06 0.71 7.45 -51.93 -0.39 0.33 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.35 6.70 4.29 -39.29 -0.17 6.54 16 42 H 0.04 0.65 8.06 -51.93 -0.42 0.24 16 43 H 0.09 1.49 7.44 -51.92 -0.39 1.10 16 44 H 0.39 9.81 7.90 -40.82 -0.32 9.49 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -35.61 381.76 -4.78 -40.39 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -6.06 Total: 13.78 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 0.55 Total: 14.40 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: -0.10 Total: -63.85 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: 0.09 Total: -27.06 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.61 -4.78 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331427561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.284 kcal (2) G-P(sol) polarization free energy of solvation -35.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds