Wall clock time and date at job start Sat Apr 11 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35722 * 117.00209 * 2 1 4 4 C 1.41856 * 126.78843 * 179.71030 * 3 2 1 5 5 C 1.36661 * 103.81332 * 180.26040 * 4 3 2 6 6 C 1.47539 * 126.88058 * 179.97438 * 5 4 3 7 7 O 1.21583 * 119.99684 * 353.13812 * 6 5 4 8 8 N 1.34778 * 120.00337 * 173.14176 * 6 5 4 9 9 C 1.46498 * 119.99764 * 3.82936 * 8 6 5 10 10 C 1.46495 * 119.99951 * 183.83034 * 8 6 5 11 11 C 1.52999 * 109.47251 * 90.00136 * 10 8 6 12 12 H 1.09001 * 109.47053 * 64.99656 * 11 10 8 13 13 C 1.52997 * 109.47130 * 184.99841 * 11 10 8 14 14 N 1.46903 * 109.46919 * 304.99485 * 11 10 8 15 15 C 1.46895 * 110.99934 * 154.99783 * 14 11 10 16 16 C 1.50699 * 109.47213 * 180.02562 * 15 14 11 17 17 O 1.21289 * 119.99983 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99722 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99823 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99734 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00223 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99917 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00040 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46813 * 90.00168 * 23 21 19 25 25 H 1.48497 * 109.47232 * 209.99899 * 23 21 19 26 26 H 1.48493 * 109.47336 * 330.00415 * 23 21 19 27 27 O 1.34659 * 106.23861 * 359.97438 * 5 4 3 28 28 N 1.20870 * 111.63908 * 359.97438 * 27 5 4 29 29 H 1.08997 * 109.46941 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47220 * 300.00134 * 1 2 3 31 31 H 1.09002 * 109.46921 * 60.00449 * 1 2 3 32 32 H 1.07999 * 128.09174 * 0.25721 * 4 3 2 33 33 H 1.08997 * 109.47140 * 84.02909 * 9 8 6 34 34 H 1.08994 * 109.47258 * 204.03182 * 9 8 6 35 35 H 1.09006 * 109.47231 * 324.03664 * 9 8 6 36 36 H 1.09008 * 109.46981 * 209.99987 * 10 8 6 37 37 H 1.08996 * 109.47277 * 329.99527 * 10 8 6 38 38 H 1.09002 * 109.47068 * 180.02562 * 13 11 10 39 39 H 1.09005 * 109.47143 * 299.99978 * 13 11 10 40 40 H 1.09001 * 109.47304 * 59.99968 * 13 11 10 41 41 H 1.00898 * 110.99846 * 31.04958 * 14 11 10 42 42 H 1.09003 * 109.47519 * 300.01001 * 15 14 11 43 43 H 1.09009 * 109.47101 * 59.99897 * 15 14 11 44 44 H 0.96999 * 120.00366 * 359.97438 * 18 16 15 45 45 H 0.97004 * 120.00192 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4432 1.4504 0.0057 5 6 3.5391 2.8136 0.0091 6 6 4.7785 3.6140 0.0160 7 8 5.8558 3.0653 0.1451 8 7 4.7166 4.9534 -0.1208 9 6 3.4155 5.6230 -0.1920 10 6 5.9503 5.7396 -0.1982 11 6 6.3830 5.8670 -1.6602 12 1 5.6389 6.4429 -2.2105 13 6 7.7348 6.5798 -1.7318 14 7 6.5032 4.5285 -2.2537 15 6 6.3272 4.5811 -3.7111 16 6 6.4563 3.1929 -4.2831 17 8 6.6730 2.2522 -3.5488 18 7 6.3308 2.9968 -5.6106 19 6 6.4477 1.7337 -6.1310 20 1 6.6408 0.8961 -5.4771 21 6 6.3179 1.5314 -7.4995 22 7 6.0825 2.5505 -8.2949 23 14 6.4779 -0.1894 -8.2085 24 1 5.1428 -0.8391 -8.2370 25 1 7.0182 -0.1076 -9.5893 26 1 7.3997 -0.9895 -7.3628 27 8 2.2759 3.2801 0.0048 28 7 1.4686 2.3805 -0.0010 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.2442 0.7260 0.0072 33 1 3.0415 5.7984 0.8167 34 1 3.5252 6.5759 -0.7096 35 1 2.7118 4.9929 -0.7359 36 1 5.7752 6.7323 0.2167 37 1 6.7350 5.2413 0.3709 38 1 8.0429 6.6710 -2.7734 39 1 7.6457 7.5730 -1.2914 40 1 8.4789 6.0038 -1.1815 41 1 5.8481 3.8865 -1.8333 42 1 5.3395 4.9793 -3.9437 43 1 7.0906 5.2263 -4.1462 44 1 6.1571 3.7490 -6.1978 45 1 5.9923 2.4093 -9.2504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331427561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:56 Heat of formation + Delta-G solvation = -46.940384 kcal Electronic energy + Delta-G solvation = -30448.152999 eV Core-core repulsion = 26083.781814 eV Total energy + Delta-G solvation = -4364.371184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.20099 -41.38234 -40.11539 -40.00385 -38.01434 -36.33039 -35.83998 -34.42565 -33.37238 -33.14956 -32.01178 -28.69535 -28.49451 -28.02530 -27.47351 -25.82105 -24.67808 -24.12665 -21.97006 -21.21443 -21.10505 -19.95934 -19.39380 -19.19696 -18.13969 -18.04205 -17.59487 -17.27072 -17.08769 -16.64476 -16.47876 -16.34391 -15.98137 -15.96144 -15.56168 -15.15395 -14.91394 -14.81440 -14.28894 -14.23637 -13.72924 -13.49868 -13.35279 -13.29134 -13.19636 -12.96907 -12.94607 -12.90384 -12.63703 -12.58040 -12.46194 -12.39242 -12.13351 -11.94271 -11.53074 -11.51199 -11.08974 -10.50732 -10.35982 -10.03102 -9.83994 -9.27830 -8.48473 -5.97123 -0.46554 0.86374 1.27889 1.35560 1.39122 1.51626 1.52411 1.74696 2.02795 2.07040 2.27759 2.87252 2.94403 3.18269 3.43592 3.50518 3.60973 3.89392 3.92970 4.15636 4.20722 4.22715 4.25407 4.27351 4.42241 4.47121 4.47813 4.53915 4.57685 4.57955 4.67882 4.88811 4.95788 5.00220 5.11521 5.29617 5.38870 5.53081 5.78459 5.89682 5.96768 6.16137 6.42678 6.59055 6.66795 6.87409 7.11138 7.53777 8.10602 8.69065 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007867 B = 0.003903 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.176963 B = 7172.802356 C = 9963.761261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.293 6.293 3 C 0.203 3.797 4 C -0.165 4.165 5 C -0.058 4.058 6 C 0.591 3.409 7 O -0.520 6.520 8 N -0.600 5.600 9 C 0.061 3.939 10 C 0.113 3.887 11 C 0.060 3.940 12 H 0.065 0.935 13 C -0.134 4.134 14 N -0.683 5.683 15 C 0.064 3.936 16 C 0.433 3.567 17 O -0.621 6.621 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.075 0.925 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.270 1.270 25 H -0.267 1.267 26 H -0.275 1.275 27 O 0.131 5.869 28 N -0.396 5.396 29 H 0.136 0.864 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.188 0.812 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.141 0.859 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.338 0.662 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.396 0.604 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.898 10.862 17.399 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.200 6.200 3 C 0.006 3.994 4 C -0.188 4.188 5 C -0.125 4.125 6 C 0.376 3.624 7 O -0.396 6.396 8 N -0.333 5.333 9 C -0.080 4.080 10 C -0.008 4.008 11 C -0.050 4.050 12 H 0.083 0.917 13 C -0.192 4.192 14 N -0.320 5.320 15 C -0.068 4.068 16 C 0.220 3.780 17 O -0.507 6.507 18 N -0.209 5.209 19 C -0.464 4.464 20 H 0.093 0.907 21 C -0.210 4.210 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.192 1.192 26 H -0.200 1.200 27 O 0.065 5.935 28 N -0.121 5.121 29 H 0.154 0.846 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.205 0.795 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.087 0.913 36 H 0.159 0.841 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.160 0.840 42 H 0.079 0.921 43 H 0.124 0.876 44 H 0.230 0.770 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.698 10.092 17.732 23.037 hybrid contribution -0.469 -1.155 -1.085 1.653 sum -11.167 8.937 16.647 21.947 Atomic orbital electron populations 1.23414 0.74582 1.06383 1.02681 1.86240 1.24811 1.19867 1.89052 1.21923 0.90486 0.86295 1.00672 1.22403 0.95148 0.95670 1.05552 1.23914 0.87204 0.93732 1.07601 1.16798 0.84808 0.82853 0.77955 1.90983 1.27801 1.71336 1.49472 1.47908 1.10191 1.04599 1.70582 1.22383 0.81767 0.99366 1.04469 1.22067 0.85080 0.97776 0.95894 1.22203 0.98840 0.88881 0.95042 0.91720 1.21738 0.95120 1.00248 1.02118 1.60216 1.59678 1.10156 1.01964 1.21604 1.01704 0.93238 0.90287 1.20969 0.82519 0.91993 0.82504 1.90521 1.54948 1.45437 1.59769 1.41908 1.63392 1.09435 1.06204 1.19641 1.48242 0.86555 0.92006 0.90713 1.26005 0.96210 1.03212 0.95589 1.69666 1.48863 1.32077 1.05384 0.84959 0.78714 0.77221 0.77636 1.19590 1.19168 1.19988 1.85090 1.11262 1.28777 1.68348 1.73875 1.16314 0.96845 1.25109 0.84633 0.91318 0.92246 0.79484 0.89360 0.86978 0.91299 0.84135 0.90157 0.93199 0.88878 0.93219 0.84008 0.92115 0.87626 0.76980 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.73 113.37 1.22 1.61 16 2 O -0.29 -7.52 10.57 -90.44 -0.96 -8.48 16 3 C 0.20 5.72 8.00 85.78 0.69 6.41 16 4 C -0.16 -4.96 10.98 22.80 0.25 -4.71 16 5 C -0.06 -1.64 6.89 24.36 0.17 -1.47 16 6 C 0.59 17.23 5.90 86.70 0.51 17.74 16 7 O -0.52 -19.52 15.32 -3.98 -0.06 -19.58 16 8 N -0.60 -12.25 2.66 -850.57 -2.26 -14.52 16 9 C 0.06 0.77 9.69 127.77 1.24 2.00 16 10 C 0.11 2.03 5.19 86.38 0.45 2.48 16 11 C 0.06 1.34 2.95 44.91 0.13 1.47 16 12 H 0.06 1.19 7.80 -2.39 -0.02 1.18 16 13 C -0.13 -2.59 9.41 71.98 0.68 -1.91 16 14 N -0.68 -23.93 5.87 -495.57 -2.91 -26.84 16 15 C 0.06 2.38 5.96 85.56 0.51 2.89 16 16 C 0.43 22.15 7.82 87.66 0.69 22.84 16 17 O -0.62 -37.39 15.78 -3.06 -0.05 -37.44 16 18 N -0.57 -30.78 5.29 -306.99 -1.62 -32.40 16 19 C -0.33 -19.84 9.68 84.04 0.81 -19.03 16 20 H 0.07 4.76 7.16 -2.91 -0.02 4.74 16 21 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 22 N -0.92 -50.55 13.05 21.66 0.28 -50.26 16 23 Si 0.99 44.27 29.55 68.60 2.03 46.30 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 27 O 0.13 3.19 7.98 65.67 0.52 3.71 16 28 N -0.40 -10.43 11.50 -172.02 -1.98 -12.41 16 29 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.19 5.65 8.06 -2.91 -0.02 5.63 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.11 0.76 8.03 -2.39 -0.02 0.74 16 35 H 0.07 1.08 5.42 -2.38 -0.01 1.07 16 36 H 0.14 1.14 8.07 -2.38 -0.02 1.12 16 37 H 0.08 1.81 7.37 -2.39 -0.02 1.80 16 38 H 0.05 1.07 7.45 -2.39 -0.02 1.05 16 39 H 0.09 1.08 8.14 -2.38 -0.02 1.07 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.34 13.16 4.29 -89.70 -0.38 12.77 16 42 H 0.06 1.98 8.06 -2.39 -0.02 1.96 16 43 H 0.11 3.50 7.44 -2.38 -0.02 3.48 16 44 H 0.40 20.07 7.90 -92.71 -0.73 19.34 16 45 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -80.98 381.76 0.73 -80.25 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: -0.07 Total: 41.47 kcal Atomic # 6 Polarization: 22.40 SS G_CDS: 7.80 Total: 30.21 kcal Atomic # 7 Polarization: -127.94 SS G_CDS: -8.49 Total: -136.43 kcal Atomic # 8 Polarization: -61.25 SS G_CDS: -0.54 Total: -61.79 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -80.98 0.73 -80.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331427561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.306 kcal (2) G-P(sol) polarization free energy of solvation -80.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds