Wall clock time and date at job start Sat Apr 11 2020 06:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31157 * 1 3 3 Cl 1.73607 * 119.99680 * 2 1 4 4 C 1.50700 * 120.00373 * 179.97438 * 2 1 3 5 5 N 1.46498 * 109.46688 * 95.00122 * 4 2 1 6 6 C 1.36737 * 127.13936 * 86.05230 * 5 4 2 7 7 C 1.50703 * 126.34627 * 359.97020 * 6 5 4 8 8 H 1.09003 * 110.75345 * 359.30695 * 7 6 5 9 9 C 1.55306 * 110.84728 * 122.77315 * 7 6 5 10 10 C 1.55207 * 100.82765 * 152.17950 * 9 7 6 11 11 O 1.43646 * 105.26012 * 323.81730 * 10 9 7 12 12 C 1.43239 * 109.96852 * 24.28542 * 11 10 9 13 13 N 1.30294 * 107.30551 * 179.97438 * 6 5 4 14 14 N 1.28524 * 110.05335 * 359.97438 * 13 6 5 15 15 C 1.31215 * 109.86209 * 0.02562 * 14 13 6 16 16 N 1.38579 * 126.47312 * 180.02562 * 15 14 13 17 17 C 1.46899 * 111.00279 * 71.16156 * 16 15 14 18 18 C 1.46907 * 110.99670 * 307.20968 * 16 15 14 19 19 H 1.08993 * 109.47044 * 60.00263 * 18 16 15 20 20 C 1.52999 * 109.46859 * 300.00063 * 18 16 15 21 21 C 1.50704 * 109.46926 * 180.02562 * 18 16 15 22 22 H 1.07998 * 119.99949 * 0.02562 * 21 18 16 23 23 C 1.37878 * 119.99775 * 179.97438 * 21 18 16 24 24 N 1.31514 * 120.00070 * 0.02562 * 23 21 18 25 25 Si 1.86801 * 119.99688 * 179.97438 * 23 21 18 26 26 H 1.48502 * 109.47075 * 90.00371 * 25 23 21 27 27 H 1.48495 * 109.46779 * 209.99989 * 25 23 21 28 28 H 1.48501 * 109.47148 * 330.00149 * 25 23 21 29 29 H 1.08006 * 119.99453 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00521 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.46892 * 334.99659 * 4 2 1 32 32 H 1.09005 * 109.47173 * 214.99717 * 4 2 1 33 33 H 1.09001 * 111.12925 * 270.24916 * 9 7 6 34 34 H 1.09005 * 111.12657 * 34.40406 * 9 7 6 35 35 H 1.08998 * 110.37039 * 204.80066 * 10 9 7 36 36 H 1.08996 * 110.12366 * 82.71365 * 10 9 7 37 37 H 1.08999 * 109.82812 * 238.77053 * 12 11 10 38 38 H 1.09000 * 109.90654 * 117.84236 * 12 11 10 39 39 H 1.08993 * 109.46950 * 52.90223 * 17 16 15 40 40 H 1.09001 * 109.46703 * 172.89880 * 17 16 15 41 41 H 1.08999 * 109.47340 * 292.89663 * 17 16 15 42 42 H 1.09007 * 109.47482 * 300.00110 * 20 18 16 43 43 H 1.09000 * 109.47496 * 60.00125 * 20 18 16 44 44 H 1.08997 * 109.46674 * 180.02562 * 20 18 16 45 45 H 0.96998 * 120.00128 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1795 1.5035 0.0000 4 6 2.0652 -1.3051 0.0006 5 7 2.4136 -1.6683 -1.3752 6 6 3.5146 -1.2688 -2.0809 7 6 4.6115 -0.3614 -1.5866 8 1 4.4134 -0.0370 -0.5649 9 6 5.9944 -1.0611 -1.6859 10 6 6.9302 0.1654 -1.8563 11 8 6.1897 1.0970 -2.6608 12 6 4.7850 0.8525 -2.5245 13 7 3.4394 -1.8181 -3.2600 14 7 2.3744 -2.5324 -3.3464 15 6 1.7072 -2.4761 -2.2180 16 7 0.5114 -3.1169 -1.9353 17 6 0.7106 -4.5656 -1.7954 18 6 -0.4994 -2.8209 -2.9594 19 1 -0.1421 -3.1608 -3.9314 20 6 -0.7504 -1.3124 -3.0072 21 6 -1.7832 -3.5328 -2.6185 22 1 -1.8425 -4.1436 -1.7298 23 6 -2.8825 -3.4034 -3.4407 24 7 -2.8104 -2.6593 -4.5227 25 14 -4.4736 -4.2864 -3.0186 26 1 -5.3166 -3.4080 -2.1684 27 1 -5.2044 -4.6143 -4.2690 28 1 -4.1645 -5.5388 -2.2828 29 1 -0.5399 -0.9354 0.0004 30 1 -0.5401 0.9352 -0.0004 31 1 1.4403 -2.0852 0.4353 32 1 2.9759 -1.1985 0.5900 33 1 6.2235 -1.6101 -0.7725 34 1 6.0425 -1.7144 -2.5571 35 1 7.8493 -0.1263 -2.3644 36 1 7.1569 0.6021 -0.8837 37 1 4.3519 0.6309 -3.4999 38 1 4.2964 1.7260 -2.0929 39 1 1.5030 -4.7551 -1.0715 40 1 -0.2145 -5.0279 -1.4509 41 1 0.9908 -4.9886 -2.7601 42 1 -1.1077 -0.9725 -2.0351 43 1 0.1780 -0.7972 -3.2534 44 1 -1.5007 -1.0929 -3.7667 45 1 -3.5836 -2.5685 -5.1013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401402523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:02 Heat of formation + Delta-G solvation = 45.930882 kcal Electronic energy + Delta-G solvation = -28996.787660 eV Core-core repulsion = 25077.152841 eV Total energy + Delta-G solvation = -3919.634819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.08071 -40.31918 -38.77431 -38.17460 -36.54464 -34.98251 -34.15581 -33.35095 -31.36542 -30.84078 -29.53873 -28.20799 -27.32761 -26.09868 -24.57649 -23.50940 -23.18655 -22.09236 -20.93923 -20.73906 -18.61620 -18.21825 -17.89525 -17.39106 -17.20248 -16.84660 -16.51221 -16.29901 -15.92012 -15.52120 -15.33263 -15.12533 -14.74919 -14.30195 -14.15536 -13.75464 -13.52619 -13.32862 -13.21655 -13.11696 -12.96636 -12.81594 -12.69121 -12.65945 -12.54507 -12.40639 -12.22724 -12.16394 -12.11523 -12.01395 -11.97022 -11.52729 -11.12266 -11.06545 -10.56954 -10.55970 -10.28395 -9.98098 -9.52412 -8.12272 -6.26737 0.46950 0.77440 1.16730 1.44963 1.47145 1.49988 1.58322 1.76694 2.42961 2.74976 3.00580 3.19832 3.24070 3.40129 3.48454 3.58848 3.74730 3.91161 4.10220 4.15127 4.28640 4.29373 4.37983 4.59194 4.65443 4.68834 4.70107 4.76756 4.83033 4.85304 4.85926 4.89248 4.90713 4.98781 5.06670 5.10802 5.17437 5.20144 5.41268 5.53217 5.65528 5.85789 5.95421 5.96383 6.16059 6.59876 6.84747 7.43036 7.72755 8.94557 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016326 B = 0.003736 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.615220 B = 7493.488458 C = 8236.260040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.121 4.121 3 Cl -0.082 7.082 4 C 0.150 3.850 5 N -0.460 5.460 6 C 0.193 3.807 7 C -0.026 4.026 8 H 0.125 0.875 9 C -0.139 4.139 10 C 0.050 3.950 11 O -0.399 6.399 12 C 0.072 3.928 13 N -0.319 5.319 14 N -0.361 5.361 15 C 0.374 3.626 16 N -0.459 5.459 17 C 0.051 3.949 18 C 0.238 3.762 19 H -0.032 1.032 20 C -0.109 4.109 21 C -0.518 4.518 22 H 0.078 0.922 23 C 0.015 3.985 24 N -0.922 5.922 25 Si 0.966 3.034 26 H -0.273 1.273 27 H -0.293 1.293 28 H -0.261 1.261 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.012 0.988 42 H 0.054 0.946 43 H -0.009 1.009 44 H 0.060 0.940 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.792 5.277 16.110 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.148 4.148 3 Cl -0.054 7.054 4 C 0.029 3.971 5 N -0.153 5.153 6 C -0.075 4.075 7 C -0.047 4.047 8 H 0.143 0.857 9 C -0.177 4.177 10 C -0.026 4.026 11 O -0.319 6.319 12 C -0.006 4.006 13 N -0.158 5.158 14 N -0.204 5.204 15 C 0.017 3.983 16 N -0.185 5.185 17 C -0.096 4.096 18 C 0.133 3.867 19 H -0.015 1.015 20 C -0.167 4.167 21 C -0.557 4.557 22 H 0.096 0.904 23 C -0.185 4.185 24 N -0.561 5.561 25 Si 0.791 3.209 26 H -0.198 1.198 27 H -0.219 1.219 28 H -0.185 1.185 29 H 0.149 0.851 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.135 0.865 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.030 0.970 42 H 0.073 0.927 43 H 0.011 0.989 44 H 0.078 0.922 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.031 5.387 14.867 21.141 hybrid contribution -1.410 -0.300 -0.087 1.444 sum 12.621 5.087 14.780 20.091 Atomic orbital electron populations 1.24490 0.94113 1.05015 0.91990 1.23262 0.94189 0.87361 1.09972 1.98366 1.77608 1.32234 1.97144 1.21209 1.03156 0.93987 0.78774 1.46514 1.18195 1.36245 1.14342 1.24669 0.91250 1.01848 0.89753 1.21206 0.90459 0.92103 1.00894 0.85697 1.23415 0.90828 0.98689 1.04812 1.23664 0.95176 0.87235 0.96496 1.88400 1.16692 1.57154 1.69610 1.22957 0.82851 0.96191 0.98556 1.73858 1.14142 1.10767 1.17080 1.74648 1.03741 1.20821 1.21140 1.22734 0.93474 0.95648 0.86456 1.59247 1.00644 1.10331 1.48277 1.22260 1.02999 0.84674 0.99673 1.19045 0.88060 0.93694 0.85938 1.01453 1.21586 0.97492 0.96300 1.01328 1.21326 0.95216 1.29485 1.09647 0.90385 1.25745 1.02211 0.95944 0.94579 1.70068 1.31337 1.40097 1.14573 0.85434 0.78969 0.79191 0.77296 1.19817 1.21908 1.18530 0.85057 0.85838 0.84877 0.84662 0.86498 0.91130 0.88033 0.89326 0.93080 0.90276 0.90631 0.88805 0.96958 0.92741 0.98950 0.92158 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 12.67 67.62 0.86 -1.87 16 2 C -0.12 -2.64 6.08 25.49 0.16 -2.49 16 3 Cl -0.08 -1.67 28.20 -2.72 -0.08 -1.74 16 4 C 0.15 3.11 6.07 85.63 0.52 3.63 16 5 N -0.46 -13.87 2.79 -518.92 -1.45 -15.32 16 6 C 0.19 5.97 6.62 137.64 0.91 6.88 16 7 C -0.03 -0.56 3.38 -10.28 -0.03 -0.60 16 8 H 0.13 2.07 6.35 -2.39 -0.02 2.06 16 9 C -0.14 -2.47 6.63 32.14 0.21 -2.26 16 10 C 0.05 0.80 7.78 72.74 0.57 1.37 16 11 O -0.40 -9.77 11.36 -148.98 -1.69 -11.46 16 12 C 0.07 1.83 7.40 72.45 0.54 2.36 16 13 N -0.32 -12.89 11.84 -49.54 -0.59 -13.47 16 14 N -0.36 -16.46 11.97 -58.01 -0.69 -17.15 16 15 C 0.37 14.68 5.09 260.11 1.32 16.00 16 16 N -0.46 -18.40 4.65 -711.00 -3.31 -21.70 16 17 C 0.05 1.86 9.13 127.69 1.17 3.02 16 18 C 0.24 11.85 1.96 44.17 0.09 11.94 16 19 H -0.03 -1.94 8.00 -2.39 -0.02 -1.96 16 20 C -0.11 -5.32 8.84 71.98 0.64 -4.68 16 21 C -0.52 -26.24 7.96 25.60 0.20 -26.03 16 22 H 0.08 3.70 6.40 -2.91 -0.02 3.68 16 23 C 0.01 0.76 5.30 84.65 0.45 1.21 16 24 N -0.92 -52.34 11.32 21.45 0.24 -52.09 16 25 Si 0.97 41.12 29.54 68.60 2.03 43.14 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 28 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 29 H 0.13 3.35 7.41 -2.91 -0.02 3.33 16 30 H 0.12 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.13 2.56 7.98 -2.39 -0.02 2.54 16 32 H 0.14 1.81 7.46 -2.38 -0.02 1.79 16 33 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.63 7.95 -2.38 -0.02 1.61 16 35 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 1.62 7.63 -2.39 -0.02 1.60 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 39 H 0.08 2.22 8.09 -2.39 -0.02 2.20 16 40 H 0.09 3.31 6.36 -2.39 -0.02 3.29 16 41 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.05 2.38 6.03 -2.38 -0.01 2.37 16 43 H -0.01 -0.43 7.22 -2.39 -0.02 -0.45 16 44 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 45 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -69.34 377.91 3.05 -66.28 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 1.00 Total: 15.03 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 7.59 Total: 8.49 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -5.79 Total: -119.74 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -1.69 Total: -11.46 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.08 Total: -1.74 kcal Total: -69.34 3.05 -66.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401402523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.215 kcal (2) G-P(sol) polarization free energy of solvation -69.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds