Wall clock time and date at job start Sat Apr 11 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31160 * 1 3 3 Cl 1.73598 * 119.99464 * 2 1 4 4 C 1.50697 * 120.00477 * 179.97438 * 2 1 3 5 5 N 1.46494 * 109.47225 * 94.99994 * 4 2 1 6 6 C 1.36744 * 127.13617 * 94.92085 * 5 4 2 7 7 C 1.50697 * 126.34431 * 0.02562 * 6 5 4 8 8 H 1.09003 * 110.75310 * 359.01474 * 7 6 5 9 9 C 1.55301 * 110.84687 * 122.48593 * 7 6 5 10 10 C 1.55501 * 100.69617 * 152.41670 * 9 7 6 11 11 O 1.43642 * 105.18090 * 323.58227 * 10 9 7 12 12 C 1.43232 * 109.97176 * 24.43204 * 11 10 9 13 13 N 1.30289 * 107.30450 * 179.75681 * 6 5 4 14 14 N 1.28524 * 110.05813 * 0.24072 * 13 6 5 15 15 C 1.31217 * 109.86186 * 359.97438 * 14 13 6 16 16 N 1.38574 * 126.47822 * 180.02562 * 15 14 13 17 17 C 1.46900 * 110.99975 * 57.68600 * 16 15 14 18 18 C 1.46900 * 111.00120 * 293.72824 * 16 15 14 19 19 H 1.09002 * 109.47323 * 310.00153 * 18 16 15 20 20 C 1.53005 * 109.46884 * 70.00067 * 18 16 15 21 21 C 1.50704 * 109.47103 * 189.99760 * 18 16 15 22 22 H 1.07992 * 120.00139 * 0.02562 * 21 18 16 23 23 C 1.37881 * 119.99360 * 180.02562 * 21 18 16 24 24 N 1.31508 * 120.00598 * 0.02562 * 23 21 18 25 25 Si 1.86804 * 119.99386 * 180.02562 * 23 21 18 26 26 H 1.48491 * 109.47583 * 59.99764 * 25 23 21 27 27 H 1.48497 * 109.47057 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46870 * 299.99543 * 25 23 21 29 29 H 1.08008 * 119.99460 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00336 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46890 * 335.00089 * 4 2 1 32 32 H 1.08998 * 109.47500 * 215.00402 * 4 2 1 33 33 H 1.08994 * 111.12709 * 270.44596 * 9 7 6 34 34 H 1.09004 * 111.12627 * 34.61150 * 9 7 6 35 35 H 1.08997 * 110.28441 * 204.64943 * 10 9 7 36 36 H 1.09003 * 110.29208 * 82.51410 * 10 9 7 37 37 H 1.09004 * 109.83013 * 238.77403 * 12 11 10 38 38 H 1.08998 * 109.90926 * 117.84494 * 12 11 10 39 39 H 1.08995 * 109.47382 * 65.57182 * 17 16 15 40 40 H 1.09006 * 109.47136 * 185.57506 * 17 16 15 41 41 H 1.08996 * 109.46865 * 305.57067 * 17 16 15 42 42 H 1.09001 * 109.46814 * 180.02562 * 20 18 16 43 43 H 1.09001 * 109.46627 * 299.99922 * 20 18 16 44 44 H 1.09002 * 109.47070 * 59.99931 * 20 18 16 45 45 H 0.96998 * 119.99830 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1795 1.5035 0.0000 4 6 2.0652 -1.3050 0.0006 5 7 2.4136 -1.6683 -1.3751 6 6 3.5887 -1.4096 -2.0249 7 6 4.7841 -0.6897 -1.4560 8 1 4.5915 -0.3710 -0.4315 9 6 6.0528 -1.5825 -1.5278 10 6 7.1644 -0.4983 -1.6109 11 8 6.6037 0.5546 -2.4111 12 6 5.1737 0.5134 -2.3416 13 7 3.4854 -1.9061 -3.2251 14 7 2.3320 -2.4522 -3.3784 15 6 1.6321 -2.3329 -2.2749 16 7 0.3444 -2.7984 -2.0618 17 6 0.2652 -4.2484 -2.2841 18 6 -0.6208 -2.0827 -2.9069 19 1 -0.4684 -1.0085 -2.8028 20 6 -0.4174 -2.4874 -4.3683 21 6 -2.0220 -2.4353 -2.4784 22 1 -2.1797 -3.1219 -1.6599 23 6 -3.1025 -1.8811 -3.1314 24 7 -2.9104 -1.0453 -4.1284 25 14 -4.8393 -2.3175 -2.5998 26 1 -5.0366 -1.9238 -1.1817 27 1 -5.8149 -1.5950 -3.4549 28 1 -5.0470 -3.7811 -2.7407 29 1 -0.5399 -0.9354 -0.0004 30 1 -0.5401 0.9353 -0.0004 31 1 1.4403 -2.0852 0.4352 32 1 2.9758 -1.1985 0.5900 33 1 6.1573 -2.1896 -0.6286 34 1 6.0442 -2.2062 -2.4218 35 1 8.0542 -0.9055 -2.0910 36 1 7.4068 -0.1283 -0.6147 37 1 4.7584 0.3864 -3.3414 38 1 4.7968 1.4355 -1.8993 39 1 0.8630 -4.7643 -1.5328 40 1 -0.7730 -4.5716 -2.2073 41 1 0.6469 -4.4850 -3.2773 42 1 -1.1333 -1.9560 -4.9954 43 1 0.5960 -2.2325 -4.6782 44 1 -0.5698 -3.5617 -4.4725 45 1 -3.6706 -0.6552 -4.5875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401402531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:11 Heat of formation + Delta-G solvation = 66.012475 kcal Electronic energy + Delta-G solvation = -28968.880102 eV Core-core repulsion = 25050.116086 eV Total energy + Delta-G solvation = -3918.764016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.67410 -39.35169 -37.28323 -37.06944 -35.37739 -33.33216 -32.78567 -32.10656 -29.95869 -28.93989 -27.99093 -27.02474 -25.36629 -25.18718 -23.31764 -22.46316 -21.64917 -20.67617 -19.61826 -19.45413 -17.27849 -16.57694 -16.48123 -16.25963 -15.90155 -15.45360 -15.32374 -14.92655 -14.60629 -14.17968 -13.98378 -13.68819 -13.35249 -13.02843 -12.50274 -12.47641 -12.34485 -12.16725 -11.89455 -11.70525 -11.59748 -11.54713 -11.33975 -11.23567 -11.13098 -11.00715 -10.96961 -10.82601 -10.61692 -10.26235 -10.19139 -9.99083 -9.83647 -9.63003 -9.18830 -8.98495 -8.52612 -8.48470 -7.83434 -6.13121 -4.20649 1.69594 2.04831 2.26288 2.73166 3.20524 3.23087 3.29678 3.30540 3.69980 4.24333 4.27270 4.42284 4.49105 4.57235 4.60446 4.68761 4.85732 4.97262 5.05057 5.18452 5.24593 5.48437 5.53490 5.64919 5.69532 5.81683 5.84613 5.85768 5.97169 6.11070 6.22272 6.24841 6.28355 6.38844 6.53275 6.74872 6.83228 6.92331 7.00991 7.13518 7.43465 7.57472 7.67981 7.86513 8.19639 8.37835 8.82791 9.15717 9.44819 10.93040 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.003893 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.225766 B = 7190.148732 C = 8065.613902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.129 4.129 3 Cl -0.093 7.093 4 C 0.162 3.838 5 N -0.467 5.467 6 C 0.170 3.830 7 C -0.028 4.028 8 H 0.097 0.903 9 C -0.144 4.144 10 C 0.053 3.947 11 O -0.380 6.380 12 C 0.067 3.933 13 N -0.283 5.283 14 N -0.310 5.310 15 C 0.381 3.619 16 N -0.471 5.471 17 C 0.044 3.956 18 C 0.229 3.771 19 H 0.036 0.964 20 C -0.176 4.176 21 C -0.510 4.510 22 H 0.064 0.936 23 C 0.065 3.935 24 N -0.886 5.886 25 Si 0.898 3.102 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.277 1.277 29 H 0.144 0.856 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.040 0.960 42 H 0.086 0.914 43 H 0.036 0.964 44 H 0.031 0.969 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.235 0.645 11.427 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.156 4.156 3 Cl -0.065 7.065 4 C 0.038 3.962 5 N -0.160 5.160 6 C -0.098 4.098 7 C -0.049 4.049 8 H 0.115 0.885 9 C -0.182 4.182 10 C -0.024 4.024 11 O -0.299 6.299 12 C -0.010 4.010 13 N -0.123 5.123 14 N -0.153 5.153 15 C 0.026 3.974 16 N -0.197 5.197 17 C -0.103 4.103 18 C 0.124 3.876 19 H 0.054 0.946 20 C -0.235 4.235 21 C -0.549 4.549 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.523 5.523 25 Si 0.726 3.274 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.202 1.202 29 H 0.162 0.838 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.538 0.726 10.242 16.991 hybrid contribution -1.474 0.087 0.915 1.737 sum 12.064 0.813 11.157 16.453 Atomic orbital electron populations 1.24502 0.93588 1.05338 0.90379 1.23184 0.94136 0.86771 1.11471 1.98356 1.78001 1.32810 1.97298 1.20752 1.01000 0.93883 0.80519 1.46418 1.12947 1.43907 1.12777 1.23968 0.88826 1.05198 0.91760 1.20948 0.89630 0.94707 0.99592 0.88526 1.23445 0.92252 0.98175 1.04356 1.23454 0.96595 0.86839 0.95477 1.88414 1.18852 1.52423 1.70218 1.23119 0.81080 0.96267 1.00543 1.73928 1.13153 1.11914 1.13317 1.74785 0.99872 1.20914 1.19713 1.22948 0.93125 0.96267 0.85066 1.59453 0.96931 1.06001 1.57319 1.22255 1.03274 0.85353 0.99462 1.19369 0.88066 0.92873 0.87253 0.94577 1.22463 1.00364 0.99964 1.00704 1.20921 0.88894 1.27930 1.17146 0.91745 1.24893 0.99159 0.94927 0.94803 1.69896 1.31069 1.29805 1.21562 0.86559 0.83761 0.78587 0.78477 1.20210 1.21340 1.20221 0.83808 0.86705 0.86179 0.88359 0.89669 0.88803 0.89423 0.92116 0.89811 0.91020 0.93748 0.89156 0.94102 0.89558 0.94551 0.95016 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 14.02 28.97 0.41 -0.98 16 2 C -0.13 -1.69 6.08 -36.07 -0.22 -1.91 16 3 Cl -0.09 -1.17 28.99 -51.86 -1.50 -2.67 16 4 C 0.16 1.98 6.23 -5.20 -0.03 1.95 16 5 N -0.47 -7.43 2.79 -115.37 -0.32 -7.75 16 6 C 0.17 2.68 6.62 -154.02 -1.02 1.66 16 7 C -0.03 -0.33 3.36 -89.83 -0.30 -0.63 16 8 H 0.10 0.98 6.95 -51.93 -0.36 0.62 16 9 C -0.14 -1.45 6.64 -24.18 -0.16 -1.61 16 10 C 0.05 0.50 7.79 38.49 0.30 0.80 16 11 O -0.38 -4.92 11.36 -35.23 -0.40 -5.32 16 12 C 0.07 0.88 7.39 37.88 0.28 1.16 16 13 N -0.28 -5.47 11.84 32.99 0.39 -5.08 16 14 N -0.31 -6.60 9.84 30.31 0.30 -6.30 16 15 C 0.38 7.40 6.27 -318.87 -2.00 5.40 16 16 N -0.47 -9.32 4.73 -176.08 -0.83 -10.15 16 17 C 0.04 0.81 8.53 60.06 0.51 1.33 16 18 C 0.23 5.38 2.28 -68.86 -0.16 5.23 16 19 H 0.04 0.97 8.05 -51.93 -0.42 0.55 16 20 C -0.18 -4.32 8.17 37.16 0.30 -4.02 16 21 C -0.51 -12.57 7.83 -34.44 -0.27 -12.84 16 22 H 0.06 1.54 7.17 -52.49 -0.38 1.17 16 23 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 24 N -0.89 -24.05 11.32 55.43 0.63 -23.42 16 25 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 29 H 0.14 2.17 8.00 -52.48 -0.42 1.75 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 31 H 0.12 1.37 7.99 -51.93 -0.41 0.96 16 32 H 0.10 0.92 7.07 -51.93 -0.37 0.55 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.12 7.95 -51.93 -0.41 0.70 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 1.28 7.63 -51.93 -0.40 0.88 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.69 6.65 -51.93 -0.35 1.35 16 41 H 0.04 0.80 6.59 -51.93 -0.34 0.45 16 42 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 43 H 0.04 0.89 5.99 -51.93 -0.31 0.58 16 44 H 0.03 0.75 6.54 -51.93 -0.34 0.41 16 45 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 377.98 15.07 5.70 5.70 Total: -1.00 -29.38 377.98 -10.01 -39.39 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.49 Total: 3.65 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -2.45 Total: -2.91 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.16 Total: -52.71 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.40 Total: -5.32 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.50 Total: -2.67 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.38 -10.01 -39.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401402531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.406 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds