Wall clock time and date at job start Sat Apr 11 2020 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31162 * 1 3 3 Cl 1.73595 * 120.00136 * 2 1 4 4 C 1.50696 * 119.99931 * 180.02562 * 2 1 3 5 5 N 1.46498 * 109.47314 * 94.99905 * 4 2 1 6 6 C 1.36740 * 127.13739 * 95.12392 * 5 4 2 7 7 C 1.50700 * 126.34724 * 359.97438 * 6 5 4 8 8 H 1.08995 * 111.01737 * 357.23601 * 7 6 5 9 9 C 1.55566 * 111.22531 * 232.92807 * 7 6 5 10 10 C 1.54377 * 102.27386 * 207.98508 * 9 7 6 11 11 O 1.43241 * 107.58963 * 21.35795 * 10 9 7 12 12 C 1.43640 * 109.97044 * 1.71017 * 11 10 9 13 13 N 1.30292 * 107.30574 * 180.26289 * 6 5 4 14 14 N 1.28531 * 110.05612 * 359.56264 * 13 6 5 15 15 C 1.31224 * 109.85651 * 0.44388 * 14 13 6 16 16 N 1.38580 * 126.47494 * 179.73194 * 15 14 13 17 17 C 1.46893 * 110.99878 * 95.31105 * 16 15 14 18 18 C 1.46903 * 110.99771 * 331.35674 * 16 15 14 19 19 H 1.09005 * 109.47073 * 59.99964 * 18 16 15 20 20 C 1.52996 * 109.47584 * 300.00026 * 18 16 15 21 21 C 1.50696 * 109.46986 * 179.97438 * 18 16 15 22 22 H 1.08004 * 120.00309 * 0.02562 * 21 18 16 23 23 C 1.37875 * 120.00111 * 180.02562 * 21 18 16 24 24 N 1.31513 * 120.00133 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 120.00372 * 180.02562 * 23 21 18 26 26 H 1.48501 * 109.46772 * 359.97438 * 25 23 21 27 27 H 1.48491 * 109.47304 * 119.99703 * 25 23 21 28 28 H 1.48500 * 109.47387 * 240.00253 * 25 23 21 29 29 H 1.08001 * 120.00046 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.00148 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47268 * 334.99981 * 4 2 1 32 32 H 1.09003 * 109.47165 * 214.99708 * 4 2 1 33 33 H 1.09002 * 110.83572 * 89.78973 * 9 7 6 34 34 H 1.08996 * 111.01060 * 326.26346 * 9 7 6 35 35 H 1.08999 * 109.83329 * 261.84467 * 10 9 7 36 36 H 1.08997 * 109.83401 * 140.87252 * 10 9 7 37 37 H 1.09000 * 110.30973 * 94.48761 * 12 11 10 38 38 H 1.08999 * 110.31376 * 216.55336 * 12 11 10 39 39 H 1.09002 * 109.47119 * 53.82518 * 17 16 15 40 40 H 1.09001 * 109.46988 * 173.81791 * 17 16 15 41 41 H 1.09002 * 109.47527 * 293.81767 * 17 16 15 42 42 H 1.09005 * 109.46865 * 300.00065 * 20 18 16 43 43 H 1.09004 * 109.47260 * 59.99824 * 20 18 16 44 44 H 1.08998 * 109.47566 * 180.02562 * 20 18 16 45 45 H 0.97005 * 120.00486 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5034 0.0000 4 6 2.0651 -1.3051 -0.0006 5 7 2.4135 -1.6672 -1.3767 6 6 3.5900 -1.4115 -2.0250 7 6 4.7870 -0.6956 -1.4542 8 1 4.5879 -0.3479 -0.4406 9 6 5.2319 0.4784 -2.3728 10 6 6.7429 0.5760 -2.0719 11 8 7.1591 -0.6837 -1.5319 12 6 6.0485 -1.5942 -1.4987 13 7 3.4819 -1.8959 -3.2296 14 7 2.3296 -2.4443 -3.3825 15 6 1.6313 -2.3298 -2.2773 16 7 0.3429 -2.7939 -2.0651 17 6 0.3585 -4.1162 -1.4255 18 6 -0.4188 -2.8254 -3.3207 19 1 0.0782 -3.4863 -4.0308 20 6 -0.4961 -1.4139 -3.9059 21 6 -1.8112 -3.3348 -3.0509 22 1 -2.1014 -3.6075 -2.0470 23 6 -2.7147 -3.4527 -4.0857 24 7 -2.3613 -3.1211 -5.3083 25 14 -4.4409 -4.0835 -3.7512 26 1 -4.5857 -4.3858 -2.3045 27 1 -5.4307 -3.0480 -4.1424 28 1 -4.6783 -5.3186 -4.5406 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.4402 -2.0856 0.4334 32 1 2.9758 -1.1991 0.5889 33 1 4.7211 1.4011 -2.0974 34 1 5.0600 0.2402 -3.4224 35 1 6.9249 1.3680 -1.3454 36 1 7.2905 0.7832 -2.9913 37 1 6.0403 -2.2137 -2.3955 38 1 6.0989 -2.2201 -0.6078 39 1 0.9618 -4.0741 -0.5186 40 1 -0.6602 -4.4086 -1.1708 41 1 0.7853 -4.8472 -2.1123 42 1 -0.9932 -0.7529 -3.1958 43 1 0.5111 -1.0458 -4.1012 44 1 -1.0617 -1.4371 -4.8374 45 1 -2.9968 -3.2044 -6.0364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401402535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:14 Heat of formation + Delta-G solvation = 65.059362 kcal Electronic energy + Delta-G solvation = -28837.794896 eV Core-core repulsion = 24918.989550 eV Total energy + Delta-G solvation = -3918.805346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.67374 -39.38439 -37.22575 -37.11120 -35.46585 -33.32060 -32.83909 -32.16097 -29.94906 -29.33052 -28.34807 -27.10236 -25.49014 -24.41886 -23.43224 -22.35218 -21.71396 -20.91795 -19.75772 -19.37893 -17.32450 -16.67739 -16.43934 -16.38972 -15.94653 -15.41999 -15.32908 -14.85608 -14.64927 -14.37087 -13.82717 -13.72974 -13.61042 -13.24655 -12.62822 -12.50627 -12.35729 -12.30300 -12.05800 -11.93102 -11.65820 -11.58847 -11.24629 -11.14304 -11.09997 -11.05401 -10.97353 -10.78741 -10.36861 -10.30091 -10.14327 -10.07187 -9.87906 -9.65550 -9.34275 -9.21286 -8.66270 -8.51747 -7.62859 -6.10548 -4.18346 1.56718 2.00862 2.15789 2.67491 3.22987 3.24123 3.31426 3.33203 3.67633 4.23847 4.26674 4.35560 4.45826 4.52677 4.54059 4.69816 4.83661 4.99724 5.02395 5.10890 5.21879 5.43898 5.54716 5.57786 5.63457 5.70306 5.76327 5.80664 5.91093 6.03123 6.04682 6.08763 6.18151 6.29767 6.43166 6.74408 6.80849 6.86232 7.01338 7.10961 7.36215 7.60183 7.67381 7.88685 8.16751 8.37294 8.84058 9.20807 9.46830 10.95919 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.003661 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.439383 B = 7646.327345 C = 8486.709554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.117 4.117 3 Cl -0.089 7.089 4 C 0.160 3.840 5 N -0.476 5.476 6 C 0.165 3.835 7 C -0.027 4.027 8 H 0.098 0.902 9 C -0.141 4.141 10 C 0.054 3.946 11 O -0.382 6.382 12 C 0.065 3.935 13 N -0.278 5.278 14 N -0.311 5.311 15 C 0.389 3.611 16 N -0.465 5.465 17 C 0.044 3.956 18 C 0.229 3.771 19 H 0.026 0.974 20 C -0.129 4.129 21 C -0.515 4.515 22 H 0.065 0.935 23 C 0.064 3.936 24 N -0.883 5.883 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.139 0.861 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.094 0.906 41 H 0.034 0.966 42 H 0.026 0.974 43 H 0.013 0.987 44 H 0.089 0.911 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.339 6.716 13.473 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 Cl -0.061 7.061 4 C 0.036 3.964 5 N -0.171 5.171 6 C -0.102 4.102 7 C -0.048 4.048 8 H 0.116 0.884 9 C -0.180 4.180 10 C -0.023 4.023 11 O -0.301 6.301 12 C -0.012 4.012 13 N -0.118 5.118 14 N -0.154 5.154 15 C 0.034 3.966 16 N -0.191 5.191 17 C -0.104 4.104 18 C 0.125 3.875 19 H 0.043 0.957 20 C -0.188 4.188 21 C -0.554 4.554 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.521 5.521 25 Si 0.727 3.273 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.157 0.843 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.112 0.888 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.032 0.968 44 H 0.108 0.892 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.642 6.715 12.221 18.165 hybrid contribution -1.378 -0.089 0.837 1.615 sum 10.264 6.626 13.059 17.883 Atomic orbital electron populations 1.24384 0.93689 1.04884 0.91935 1.23209 0.94142 0.86975 1.10100 1.98361 1.77977 1.32579 1.97199 1.20751 1.01085 0.93704 0.80846 1.46317 1.13567 1.44400 1.12861 1.23885 0.88877 1.05948 0.91454 1.21072 0.89538 0.94814 0.99412 0.88427 1.23195 0.95188 0.98034 1.01561 1.23116 0.93998 0.86482 0.98677 1.88395 1.33677 1.23246 1.84831 1.23400 0.83024 0.91968 1.02847 1.73930 1.12941 1.11933 1.12981 1.74834 0.99199 1.20720 1.20671 1.23019 0.91531 0.96302 0.85760 1.59281 1.02962 1.25412 1.31482 1.22281 1.03412 0.87941 0.96722 1.19361 0.91382 0.95068 0.81694 0.95671 1.21778 0.98071 0.96480 1.02435 1.21060 0.95596 1.44016 0.94717 0.91670 1.24900 0.98711 0.95281 0.94952 1.69923 1.35252 1.47307 0.99612 0.86437 0.84108 0.78494 0.78308 1.19740 1.20990 1.21009 0.84315 0.86711 0.86616 0.88177 0.89778 0.88877 0.91230 0.91033 0.90558 0.89587 0.93944 0.88781 0.94772 0.95461 0.96806 0.89234 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 14.03 28.97 0.41 -0.90 16 2 C -0.12 -1.37 6.08 -36.07 -0.22 -1.59 16 3 Cl -0.09 -1.01 28.99 -51.86 -1.50 -2.51 16 4 C 0.16 1.81 6.23 -5.20 -0.03 1.78 16 5 N -0.48 -7.33 2.79 -115.37 -0.32 -7.65 16 6 C 0.17 2.57 6.75 -154.02 -1.04 1.53 16 7 C -0.03 -0.32 3.47 -89.38 -0.31 -0.63 16 8 H 0.10 0.99 6.99 -51.93 -0.36 0.62 16 9 C -0.14 -1.57 6.50 -24.64 -0.16 -1.73 16 10 C 0.05 0.53 7.80 37.88 0.30 0.83 16 11 O -0.38 -4.60 11.36 -35.23 -0.40 -5.00 16 12 C 0.07 0.75 7.24 38.18 0.28 1.03 16 13 N -0.28 -5.41 11.90 32.99 0.39 -5.02 16 14 N -0.31 -6.85 10.54 30.32 0.32 -6.53 16 15 C 0.39 7.54 5.78 -318.86 -1.84 5.70 16 16 N -0.47 -9.23 4.66 -176.08 -0.82 -10.05 16 17 C 0.04 0.76 9.14 60.06 0.55 1.31 16 18 C 0.23 5.58 1.76 -68.87 -0.12 5.46 16 19 H 0.03 0.72 7.88 -51.93 -0.41 0.31 16 20 C -0.13 -3.22 8.82 37.16 0.33 -2.89 16 21 C -0.52 -13.06 7.95 -34.44 -0.27 -13.33 16 22 H 0.07 1.58 6.40 -52.48 -0.34 1.25 16 23 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 24 N -0.88 -24.56 11.32 55.43 0.63 -23.93 16 25 Si 0.90 20.21 29.54 -169.99 -5.02 15.18 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.14 1.72 7.99 -52.49 -0.42 1.30 16 30 H 0.11 1.25 8.06 -52.48 -0.42 0.83 16 31 H 0.12 1.18 7.45 -51.93 -0.39 0.80 16 32 H 0.10 0.88 7.10 -51.93 -0.37 0.51 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.20 7.86 -51.93 -0.41 0.79 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.99 7.96 -51.93 -0.41 0.58 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.59 7.56 -51.93 -0.39 0.20 16 40 H 0.09 1.63 6.32 -51.93 -0.33 1.31 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.01 0.33 6.55 -51.93 -0.34 -0.01 16 44 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 45 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 380.57 15.07 5.74 5.74 Total: -1.00 -30.49 380.57 -9.80 -40.30 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.57 Total: 1.31 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.24 Total: -1.84 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.20 Total: -53.18 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.40 Total: -5.00 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.49 -9.80 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401402535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.357 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds