Wall clock time and date at job start Sat Apr 11 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31162 * 1 3 3 Cl 1.73595 * 120.00136 * 2 1 4 4 C 1.50696 * 119.99931 * 180.02562 * 2 1 3 5 5 N 1.46498 * 109.47314 * 94.99905 * 4 2 1 6 6 C 1.36740 * 127.13739 * 95.12392 * 5 4 2 7 7 C 1.50700 * 126.34724 * 359.97438 * 6 5 4 8 8 H 1.08995 * 111.01737 * 357.23601 * 7 6 5 9 9 C 1.55566 * 111.22531 * 232.92807 * 7 6 5 10 10 C 1.54377 * 102.27386 * 207.98508 * 9 7 6 11 11 O 1.43241 * 107.58963 * 21.35795 * 10 9 7 12 12 C 1.43640 * 109.97044 * 1.71017 * 11 10 9 13 13 N 1.30292 * 107.30574 * 180.26289 * 6 5 4 14 14 N 1.28531 * 110.05612 * 359.56264 * 13 6 5 15 15 C 1.31224 * 109.85651 * 0.44388 * 14 13 6 16 16 N 1.38580 * 126.47494 * 179.73194 * 15 14 13 17 17 C 1.46893 * 110.99878 * 95.31105 * 16 15 14 18 18 C 1.46903 * 110.99771 * 331.35674 * 16 15 14 19 19 H 1.09005 * 109.47073 * 59.99964 * 18 16 15 20 20 C 1.52996 * 109.47584 * 300.00026 * 18 16 15 21 21 C 1.50696 * 109.46986 * 179.97438 * 18 16 15 22 22 H 1.08004 * 120.00309 * 0.02562 * 21 18 16 23 23 C 1.37875 * 120.00111 * 180.02562 * 21 18 16 24 24 N 1.31513 * 120.00133 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 120.00372 * 180.02562 * 23 21 18 26 26 H 1.48501 * 109.46772 * 359.97438 * 25 23 21 27 27 H 1.48491 * 109.47304 * 119.99703 * 25 23 21 28 28 H 1.48500 * 109.47387 * 240.00253 * 25 23 21 29 29 H 1.08001 * 120.00046 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.00148 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47268 * 334.99981 * 4 2 1 32 32 H 1.09003 * 109.47165 * 214.99708 * 4 2 1 33 33 H 1.09002 * 110.83572 * 89.78973 * 9 7 6 34 34 H 1.08996 * 111.01060 * 326.26346 * 9 7 6 35 35 H 1.08999 * 109.83329 * 261.84467 * 10 9 7 36 36 H 1.08997 * 109.83401 * 140.87252 * 10 9 7 37 37 H 1.09000 * 110.30973 * 94.48761 * 12 11 10 38 38 H 1.08999 * 110.31376 * 216.55336 * 12 11 10 39 39 H 1.09002 * 109.47119 * 53.82518 * 17 16 15 40 40 H 1.09001 * 109.46988 * 173.81791 * 17 16 15 41 41 H 1.09002 * 109.47527 * 293.81767 * 17 16 15 42 42 H 1.09005 * 109.46865 * 300.00065 * 20 18 16 43 43 H 1.09004 * 109.47260 * 59.99824 * 20 18 16 44 44 H 1.08998 * 109.47566 * 180.02562 * 20 18 16 45 45 H 0.97005 * 120.00486 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5034 0.0000 4 6 2.0651 -1.3051 -0.0006 5 7 2.4135 -1.6672 -1.3767 6 6 3.5900 -1.4115 -2.0250 7 6 4.7870 -0.6956 -1.4542 8 1 4.5879 -0.3479 -0.4406 9 6 5.2319 0.4784 -2.3728 10 6 6.7429 0.5760 -2.0719 11 8 7.1591 -0.6837 -1.5319 12 6 6.0485 -1.5942 -1.4987 13 7 3.4819 -1.8959 -3.2296 14 7 2.3296 -2.4443 -3.3825 15 6 1.6313 -2.3298 -2.2773 16 7 0.3429 -2.7939 -2.0651 17 6 0.3585 -4.1162 -1.4255 18 6 -0.4188 -2.8254 -3.3207 19 1 0.0782 -3.4863 -4.0308 20 6 -0.4961 -1.4139 -3.9059 21 6 -1.8112 -3.3348 -3.0509 22 1 -2.1014 -3.6075 -2.0470 23 6 -2.7147 -3.4527 -4.0857 24 7 -2.3613 -3.1211 -5.3083 25 14 -4.4409 -4.0835 -3.7512 26 1 -4.5857 -4.3858 -2.3045 27 1 -5.4307 -3.0480 -4.1424 28 1 -4.6783 -5.3186 -4.5406 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.4402 -2.0856 0.4334 32 1 2.9758 -1.1991 0.5889 33 1 4.7211 1.4011 -2.0974 34 1 5.0600 0.2402 -3.4224 35 1 6.9249 1.3680 -1.3454 36 1 7.2905 0.7832 -2.9913 37 1 6.0403 -2.2137 -2.3955 38 1 6.0989 -2.2201 -0.6078 39 1 0.9618 -4.0741 -0.5186 40 1 -0.6602 -4.4086 -1.1708 41 1 0.7853 -4.8472 -2.1123 42 1 -0.9932 -0.7529 -3.1958 43 1 0.5111 -1.0458 -4.1012 44 1 -1.0617 -1.4371 -4.8374 45 1 -2.9968 -3.2044 -6.0364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401402535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:13 Heat of formation + Delta-G solvation = 48.005010 kcal Electronic energy + Delta-G solvation = -28838.534429 eV Core-core repulsion = 24918.989550 eV Total energy + Delta-G solvation = -3919.544878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.04578 -40.31116 -38.78852 -38.13900 -36.54667 -34.95209 -34.11832 -33.29861 -31.29142 -30.90341 -29.60238 -28.16028 -27.32147 -26.05449 -24.58952 -23.49245 -23.10413 -22.05137 -20.95953 -20.74299 -18.58452 -18.18904 -17.73820 -17.48769 -17.22324 -16.80596 -16.49021 -16.30047 -15.77391 -15.61666 -15.24735 -15.08617 -14.62527 -14.54730 -14.21347 -13.81159 -13.47671 -13.28598 -13.26634 -13.03920 -12.97083 -12.79937 -12.70787 -12.56355 -12.49546 -12.44150 -12.19306 -12.15946 -12.06218 -12.01598 -11.97735 -11.49333 -11.10683 -11.05658 -10.56778 -10.52799 -10.28484 -10.19225 -9.25688 -8.11154 -6.25658 0.51808 0.81541 1.20604 1.45204 1.46225 1.50562 1.59320 1.81860 2.43070 2.74635 3.01364 3.21104 3.25257 3.44776 3.51732 3.60360 3.74704 3.92254 4.07498 4.13048 4.21337 4.25965 4.39939 4.57968 4.63452 4.70551 4.73193 4.78812 4.83019 4.85416 4.88605 4.91523 4.95718 5.01247 5.10317 5.12323 5.17898 5.23358 5.44223 5.53379 5.66775 5.87620 5.93506 5.97979 6.17004 6.59786 6.85701 7.43700 7.79710 8.95990 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.003661 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.439383 B = 7646.327345 C = 8486.709554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.122 4.122 3 Cl -0.085 7.085 4 C 0.150 3.850 5 N -0.466 5.466 6 C 0.191 3.809 7 C -0.025 4.025 8 H 0.125 0.875 9 C -0.139 4.139 10 C 0.055 3.945 11 O -0.393 6.393 12 C 0.069 3.931 13 N -0.318 5.318 14 N -0.363 5.363 15 C 0.377 3.623 16 N -0.453 5.453 17 C 0.044 3.956 18 C 0.242 3.758 19 H -0.025 1.025 20 C -0.110 4.110 21 C -0.518 4.518 22 H 0.079 0.921 23 C 0.012 3.988 24 N -0.921 5.921 25 Si 0.966 3.034 26 H -0.255 1.255 27 H -0.285 1.285 28 H -0.287 1.287 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.012 0.988 42 H 0.033 0.967 43 H 0.005 0.995 44 H 0.060 0.940 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.675 7.460 16.811 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.149 4.149 3 Cl -0.057 7.057 4 C 0.028 3.972 5 N -0.160 5.160 6 C -0.077 4.077 7 C -0.046 4.046 8 H 0.143 0.857 9 C -0.178 4.178 10 C -0.021 4.021 11 O -0.313 6.313 12 C -0.008 4.008 13 N -0.157 5.157 14 N -0.206 5.206 15 C 0.019 3.981 16 N -0.178 5.178 17 C -0.103 4.103 18 C 0.136 3.864 19 H -0.007 1.007 20 C -0.168 4.168 21 C -0.557 4.557 22 H 0.097 0.903 23 C -0.187 4.187 24 N -0.561 5.561 25 Si 0.792 3.208 26 H -0.179 1.179 27 H -0.211 1.211 28 H -0.213 1.213 29 H 0.152 0.848 30 H 0.140 0.860 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.127 0.873 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.031 0.969 42 H 0.052 0.948 43 H 0.024 0.976 44 H 0.079 0.921 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.997 7.467 15.603 21.051 hybrid contribution -1.357 -0.257 -0.178 1.393 sum 10.640 7.210 15.425 20.078 Atomic orbital electron populations 1.24467 0.93961 1.05071 0.91717 1.23250 0.94214 0.87293 1.10131 1.98364 1.77791 1.32350 1.97178 1.21216 1.03195 0.93987 0.78758 1.46437 1.12558 1.43219 1.13821 1.24561 0.89486 1.03367 0.90309 1.21309 0.87954 0.94761 1.00576 0.85663 1.23165 0.96476 0.98136 1.00012 1.23245 0.92782 0.86333 0.99775 1.88390 1.33939 1.23998 1.84959 1.23350 0.82704 0.91871 1.02904 1.73846 1.12540 1.13893 1.15424 1.74720 1.00619 1.22448 1.22813 1.22865 0.91509 0.97256 0.86431 1.59186 1.03229 1.26624 1.28798 1.22365 1.04173 0.86237 0.97508 1.18934 0.91452 0.93308 0.82689 1.00683 1.21525 0.96955 0.97150 1.01194 1.21379 0.95778 1.43270 0.95227 0.90272 1.25770 1.02728 0.95537 0.94666 1.70088 1.36568 1.48756 1.00642 0.85378 0.79101 0.77437 0.78921 1.17859 1.21084 1.21347 0.84789 0.86047 0.85024 0.84735 0.88606 0.91327 0.88716 0.90464 0.92825 0.87341 0.89851 0.88606 0.96932 0.94837 0.97643 0.92097 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.44 14.03 67.62 0.95 -1.49 16 2 C -0.12 -2.53 6.08 25.48 0.15 -2.37 16 3 Cl -0.08 -1.68 28.99 -2.72 -0.08 -1.76 16 4 C 0.15 2.90 6.23 85.63 0.53 3.43 16 5 N -0.47 -13.57 2.79 -518.91 -1.45 -15.02 16 6 C 0.19 5.74 6.75 137.64 0.93 6.67 16 7 C -0.02 -0.53 3.47 -9.99 -0.03 -0.56 16 8 H 0.13 1.99 6.99 -2.39 -0.02 1.97 16 9 C -0.14 -2.85 6.50 31.95 0.21 -2.64 16 10 C 0.05 0.94 7.80 72.45 0.56 1.51 16 11 O -0.39 -8.52 11.36 -148.98 -1.69 -10.21 16 12 C 0.07 1.46 7.24 72.65 0.53 1.98 16 13 N -0.32 -12.67 11.90 -49.54 -0.59 -13.26 16 14 N -0.36 -16.56 10.54 -58.00 -0.61 -17.17 16 15 C 0.38 14.58 5.78 260.11 1.50 16.08 16 16 N -0.45 -17.89 4.66 -711.01 -3.31 -21.20 16 17 C 0.04 1.49 9.14 127.69 1.17 2.66 16 18 C 0.24 12.15 1.76 44.17 0.08 12.22 16 19 H -0.02 -1.47 7.88 -2.38 -0.02 -1.49 16 20 C -0.11 -5.66 8.82 71.98 0.63 -5.03 16 21 C -0.52 -26.36 7.95 25.60 0.20 -26.15 16 22 H 0.08 3.74 6.40 -2.91 -0.02 3.72 16 23 C 0.01 0.65 5.30 84.65 0.45 1.09 16 24 N -0.92 -52.92 11.32 21.45 0.24 -52.68 16 25 Si 0.97 41.38 29.54 68.60 2.03 43.40 16 26 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 27 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 28 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 29 H 0.13 3.04 7.99 -2.91 -0.02 3.02 16 30 H 0.12 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.13 2.18 7.45 -2.39 -0.02 2.16 16 32 H 0.13 1.70 7.10 -2.39 -0.02 1.68 16 33 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.77 7.86 -2.39 -0.02 1.75 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.05 1.38 7.96 -2.39 -0.02 1.36 16 38 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.08 2.11 7.56 -2.39 -0.02 2.09 16 40 H 0.10 3.19 6.32 -2.39 -0.02 3.17 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.00 0.24 6.55 -2.39 -0.02 0.23 16 44 H 0.06 3.48 6.07 -2.39 -0.01 3.47 16 45 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 Total: -1.00 -69.42 380.57 3.40 -66.03 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 1.00 Total: 14.46 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 7.86 Total: 7.41 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -5.72 Total: -119.33 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -1.69 Total: -10.21 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.76 kcal Total: -69.42 3.40 -66.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401402535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.032 kcal (2) G-P(sol) polarization free energy of solvation -69.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds