Wall clock time and date at job start Sat Apr 11 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47244 * 2 1 4 4 N 1.46505 * 109.47032 * 240.00224 * 2 1 3 5 5 C 1.36930 * 119.99940 * 85.00277 * 4 2 1 6 6 H 1.08001 * 120.00411 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00112 * 180.27595 * 5 4 2 8 8 N 1.31628 * 119.99969 * 359.72014 * 7 5 4 9 9 Si 1.86801 * 120.00558 * 179.72330 * 7 5 4 10 10 H 1.48495 * 109.47281 * 89.99610 * 9 7 5 11 11 H 1.48498 * 109.47418 * 210.00154 * 9 7 5 12 12 H 1.48507 * 109.46664 * 329.99808 * 9 7 5 13 13 C 1.52999 * 109.47330 * 120.00351 * 2 1 3 14 14 H 1.09009 * 109.58047 * 302.43585 * 13 2 1 15 15 C 1.53189 * 109.58602 * 62.71413 * 13 2 1 16 16 C 1.53046 * 109.31297 * 174.42512 * 15 13 2 17 17 C 1.53041 * 109.53686 * 298.63934 * 16 15 13 18 18 C 1.53193 * 109.31230 * 61.36238 * 17 16 15 19 19 N 1.46927 * 109.58910 * 182.15139 * 13 2 1 20 20 C 1.34772 * 120.63021 * 6.60379 * 19 13 2 21 21 O 1.21651 * 120.00230 * 5.92941 * 20 19 13 22 22 C 1.47030 * 120.00156 * 185.93539 * 20 19 13 23 23 C 1.38541 * 126.90378 * 89.88542 * 22 20 19 24 24 Cl 1.73600 * 127.34028 * 0.02562 * 23 22 20 25 25 C 1.39810 * 105.32377 * 179.86484 * 23 22 20 26 26 N 1.30842 * 107.87613 * 0.41231 * 25 23 22 27 27 N 1.28432 * 110.97881 * 359.73590 * 26 25 23 28 28 C 1.46503 * 125.18534 * 179.97438 * 27 26 25 29 29 H 1.08999 * 109.47608 * 174.95376 * 1 2 3 30 30 H 1.08996 * 109.47075 * 294.95676 * 1 2 3 31 31 H 1.09003 * 109.46961 * 54.95100 * 1 2 3 32 32 H 0.96995 * 120.00037 * 264.99924 * 4 2 1 33 33 H 0.96995 * 120.00149 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.50255 * 294.37932 * 15 13 2 35 35 H 1.08999 * 109.49664 * 54.44604 * 15 13 2 36 36 H 1.09003 * 109.45524 * 58.65623 * 16 15 13 37 37 H 1.08995 * 109.45751 * 178.62841 * 16 15 13 38 38 H 1.08998 * 109.49982 * 181.31634 * 17 16 15 39 39 H 1.09005 * 109.49542 * 301.40993 * 17 16 15 40 40 H 1.09002 * 109.58688 * 65.15661 * 18 17 16 41 41 H 1.09005 * 109.58195 * 185.43708 * 18 17 16 42 42 H 1.08000 * 126.06104 * 180.11857 * 25 23 22 43 43 H 1.09005 * 109.47146 * 275.02371 * 28 27 26 44 44 H 1.08996 * 109.46941 * 35.02457 * 28 27 26 45 45 H 1.08997 * 109.46792 * 155.02781 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3757 6 1 1.8919 1.0404 -2.4243 7 6 2.6064 -0.6631 -3.5106 8 7 2.9194 -1.9402 -3.4515 9 14 2.7775 0.2669 -5.1215 10 1 4.1394 0.8516 -5.2133 11 1 2.5616 -0.6656 -6.2569 12 1 1.7674 1.3542 -5.1751 13 6 2.0400 -0.7213 1.2492 14 1 1.6425 -0.2347 2.1399 15 6 1.5874 -2.1845 1.2180 16 6 2.2152 -2.9337 2.3957 17 6 3.7401 -2.8969 2.2713 18 6 4.2170 -1.4417 2.3144 19 7 3.5084 -0.6780 1.2780 20 6 4.1920 0.0454 0.3693 21 8 3.5943 0.7555 -0.4172 22 6 5.6601 -0.0237 0.3283 23 6 6.4310 -0.9073 -0.4093 24 17 5.8703 -2.1586 -1.4741 25 6 7.7569 -0.5744 -0.1164 26 7 7.7428 0.4203 0.7335 27 7 6.5388 0.7674 1.0152 28 6 6.1640 1.8460 1.9331 29 1 -0.3634 -1.0236 -0.0904 30 1 -0.3633 0.4336 0.9317 31 1 -0.3633 0.5902 -0.8413 32 1 2.2490 -1.6317 -1.1527 33 1 3.2393 -2.3983 -4.2444 34 1 0.5011 -2.2311 1.2947 35 1 1.9062 -2.6440 0.2825 36 1 1.9155 -2.4583 3.3297 37 1 1.8754 -3.9693 2.3899 38 1 4.1860 -3.4505 3.0976 39 1 4.0390 -3.3499 1.3260 40 1 3.9992 -1.0146 3.2933 41 1 5.2906 -1.4035 2.1297 42 1 8.6367 -1.0562 -0.5166 43 1 6.1483 1.4651 2.9543 44 1 6.8902 2.6554 1.8584 45 1 5.1747 2.2200 1.6695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479824717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:20 Heat of formation + Delta-G solvation = 73.649009 kcal Electronic energy + Delta-G solvation = -30312.987810 eV Core-core repulsion = 26394.554939 eV Total energy + Delta-G solvation = -3918.432871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.58716 -41.33091 -38.21606 -37.32364 -36.78732 -34.32926 -34.05541 -33.69182 -31.64031 -31.13584 -29.61421 -28.07737 -26.50811 -25.65568 -24.75594 -23.60326 -22.68531 -21.66359 -21.24357 -19.97904 -19.00605 -18.45785 -17.55750 -16.88313 -16.85146 -16.26546 -16.11909 -15.65278 -15.54173 -15.35022 -15.23061 -14.88818 -14.58559 -14.37335 -14.03604 -13.97935 -13.83294 -13.60058 -13.50681 -13.16119 -12.98897 -12.82200 -12.66564 -12.59336 -12.50958 -12.28453 -12.11132 -11.98914 -11.69615 -11.57425 -11.36727 -11.32780 -11.25127 -10.73679 -10.29293 -9.90721 -9.60199 -9.42478 -8.53766 -7.64254 -4.81865 0.50649 0.98148 1.43226 1.44367 1.46892 1.50887 1.60089 1.83362 2.30640 2.71559 3.37962 3.56978 3.68534 3.88191 3.98244 4.04266 4.12738 4.13546 4.27278 4.30223 4.36213 4.39222 4.43095 4.47283 4.53111 4.64935 4.70032 4.86133 4.93092 4.96754 5.06035 5.10924 5.17396 5.18150 5.29944 5.33492 5.51360 5.55413 5.64137 5.64670 5.77259 5.92762 6.51452 6.55476 6.87195 7.38538 7.64976 8.41698 8.66936 9.57168 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.007118 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.339657 B = 3933.001181 C = 5281.258786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.063 0.937 4 N -0.705 5.705 5 C -0.166 4.166 6 H 0.046 0.954 7 C -0.068 4.068 8 N -0.948 5.948 9 Si 0.932 3.068 10 H -0.308 1.308 11 H -0.301 1.301 12 H -0.283 1.283 13 C 0.151 3.849 14 H 0.104 0.896 15 C -0.127 4.127 16 C -0.108 4.108 17 C -0.132 4.132 18 C 0.112 3.888 19 N -0.592 5.592 20 C 0.581 3.419 21 O -0.490 6.490 22 C -0.007 4.007 23 C -0.147 4.147 24 Cl -0.015 7.015 25 C 0.014 3.986 26 N -0.281 5.281 27 N -0.268 5.268 28 C 0.080 3.920 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.371 0.629 33 H 0.235 0.765 34 H 0.083 0.917 35 H 0.035 0.965 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.038 0.962 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.214 0.786 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.791 0.931 20.945 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 H 0.080 0.920 4 N -0.346 5.346 5 C -0.299 4.299 6 H 0.064 0.936 7 C -0.260 4.260 8 N -0.601 5.601 9 Si 0.766 3.234 10 H -0.238 1.238 11 H -0.228 1.228 12 H -0.209 1.209 13 C 0.048 3.952 14 H 0.121 0.879 15 C -0.166 4.166 16 C -0.145 4.145 17 C -0.170 4.170 18 C -0.010 4.010 19 N -0.327 5.327 20 C 0.364 3.636 21 O -0.361 6.361 22 C -0.138 4.138 23 C -0.184 4.184 24 Cl 0.013 6.987 25 C -0.163 4.163 26 N -0.112 5.112 27 N -0.057 5.057 28 C -0.058 4.058 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.205 0.795 33 H 0.044 0.956 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.117 0.883 39 H 0.057 0.943 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.231 0.769 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.040 2.240 21.035 21.746 hybrid contribution -0.136 -0.649 -2.580 2.664 sum 4.904 1.592 18.455 19.161 Atomic orbital electron populations 1.22406 0.98331 1.00695 1.00371 1.20872 0.91497 0.97054 0.85621 0.91955 1.42395 1.77441 1.09217 1.05546 1.19003 1.31039 0.92201 0.87689 0.93616 1.24891 1.05406 0.96676 0.99041 1.69737 1.54474 1.08701 1.27220 0.85720 0.76720 0.77763 0.83171 1.23761 1.22821 1.20900 1.21654 0.77918 0.96786 0.98853 0.87875 1.21918 1.01203 0.94635 0.98824 1.21474 0.94185 1.00781 0.98054 1.21884 0.97155 0.95720 1.02237 1.21835 0.95981 0.92057 0.91174 1.47857 1.06666 1.48000 1.30198 1.16973 0.83683 0.82008 0.80922 1.91027 1.67096 1.39994 1.37990 1.21558 0.92865 0.97613 1.01754 1.21720 0.94237 0.99373 1.03116 1.98449 1.88858 1.49079 1.62280 1.23838 0.96391 0.96921 0.99178 1.73133 1.03880 1.15979 1.18190 1.45807 1.01556 1.25883 1.32409 1.22558 1.03362 0.87389 0.92497 0.93638 0.91034 0.95403 0.79515 0.95591 0.89823 0.94605 0.89273 0.91171 0.88316 0.94332 0.88155 0.91623 0.76921 0.86413 0.86573 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 9.07 71.98 0.65 -4.79 16 2 C 0.16 6.17 1.89 44.99 0.08 6.26 16 3 H 0.06 2.75 5.86 -7.49 -0.04 2.70 16 4 N -0.71 -35.05 3.49 -322.94 -1.13 -36.17 16 5 C -0.17 -9.59 8.10 84.03 0.68 -8.90 16 6 H 0.05 2.75 7.83 -2.91 -0.02 2.73 16 7 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 8 N -0.95 -58.14 13.06 21.65 0.28 -57.86 16 9 Si 0.93 50.54 29.55 68.60 2.03 52.57 16 10 H -0.31 -17.16 7.11 99.48 0.71 -16.45 16 11 H -0.30 -16.32 7.11 99.48 0.71 -15.61 16 12 H -0.28 -14.88 7.11 99.48 0.71 -14.17 16 13 C 0.15 4.41 2.74 44.97 0.12 4.54 16 14 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 15 C -0.13 -3.53 4.81 30.67 0.15 -3.38 16 16 C -0.11 -2.12 5.88 30.62 0.18 -1.94 16 17 C -0.13 -2.79 6.08 30.67 0.19 -2.60 16 18 C 0.11 2.44 6.34 86.36 0.55 2.99 16 19 N -0.59 -17.68 2.97 -799.23 -2.38 -20.06 16 20 C 0.58 21.85 6.22 86.55 0.54 22.39 16 21 O -0.49 -23.04 10.27 -4.19 -0.04 -23.08 16 22 C -0.01 -0.24 4.66 40.76 0.19 -0.05 16 23 C -0.15 -5.38 6.89 22.72 0.16 -5.23 16 24 Cl -0.02 -0.64 29.24 -2.72 -0.08 -0.72 16 25 C 0.01 0.43 12.04 85.22 1.03 1.46 16 26 N -0.28 -8.09 11.89 -57.06 -0.68 -8.77 16 27 N -0.27 -7.49 3.75 -355.92 -1.34 -8.82 16 28 C 0.08 1.41 11.22 127.77 1.43 2.85 16 29 H 0.04 1.56 6.91 -2.39 -0.02 1.55 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.37 19.81 5.84 -92.71 -0.54 19.27 16 33 H 0.23 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.08 2.12 6.93 -2.39 -0.02 2.10 16 35 H 0.04 1.33 6.21 -2.39 -0.01 1.32 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.04 1.09 8.14 -2.38 -0.02 1.08 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.58 6.34 -2.38 -0.02 1.56 16 42 H 0.21 4.98 8.06 -2.91 -0.02 4.96 16 43 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.09 1.71 7.65 -2.39 -0.02 1.69 16 Total: -1.00 -76.47 368.34 3.53 -72.94 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.44 Total: 20.04 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 6.41 Total: 9.94 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -5.23 Total: -131.68 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.04 Total: -23.08 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 2.03 Total: 52.57 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -76.47 3.53 -72.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479824717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.587 kcal (2) G-P(sol) polarization free energy of solvation -76.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds