Wall clock time and date at job start Sat Apr 11 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46598 * 2 1 4 4 N 1.46503 * 109.47010 * 240.00450 * 2 1 3 5 5 C 1.36933 * 120.00067 * 77.71583 * 4 2 1 6 6 H 1.08000 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99967 * 179.97438 * 5 4 2 8 8 N 1.31612 * 120.00020 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99976 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47425 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47204 * 119.99935 * 9 7 5 12 12 H 1.48497 * 109.47502 * 239.99913 * 9 7 5 13 13 C 1.52995 * 109.47118 * 119.99993 * 2 1 3 14 14 H 1.09003 * 109.58463 * 67.10022 * 13 2 1 15 15 C 1.53190 * 109.59221 * 306.66886 * 13 2 1 16 16 C 1.53036 * 109.31299 * 185.57607 * 15 13 2 17 17 C 1.53041 * 109.53799 * 61.37148 * 16 15 13 18 18 C 1.53198 * 109.31048 * 298.63020 * 17 16 15 19 19 N 1.46923 * 108.77246 * 54.63347 * 18 17 16 20 20 C 1.34779 * 120.62964 * 126.41514 * 19 18 17 21 21 O 1.21645 * 120.00478 * 185.70244 * 20 19 18 22 22 C 1.47036 * 119.99832 * 5.70468 * 20 19 18 23 23 C 1.38539 * 126.90209 * 267.12203 * 22 20 19 24 24 Cl 1.73603 * 127.34118 * 359.97422 * 23 22 20 25 25 C 1.39813 * 105.32229 * 179.97438 * 23 22 20 26 26 N 1.30835 * 107.88023 * 359.97438 * 25 23 22 27 27 N 1.28436 * 110.97724 * 359.73675 * 26 25 23 28 28 C 1.46495 * 125.18733 * 180.26206 * 27 26 25 29 29 H 1.09005 * 109.47290 * 299.99224 * 1 2 3 30 30 H 1.09007 * 109.47035 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47503 * 60.00029 * 1 2 3 32 32 H 0.97001 * 119.99711 * 257.71298 * 4 2 1 33 33 H 0.97001 * 120.00521 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.49544 * 305.53271 * 15 13 2 35 35 H 1.09002 * 109.49124 * 65.62581 * 15 13 2 36 36 H 1.08996 * 109.46188 * 301.34534 * 16 15 13 37 37 H 1.09009 * 109.44382 * 181.37645 * 16 15 13 38 38 H 1.09001 * 109.50074 * 178.68026 * 17 16 15 39 39 H 1.09000 * 109.52367 * 58.59637 * 17 16 15 40 40 H 1.09000 * 109.58219 * 294.84757 * 18 17 16 41 41 H 1.09000 * 109.58768 * 174.42472 * 18 17 16 42 42 H 1.08005 * 126.06185 * 179.97438 * 25 23 22 43 43 H 1.09003 * 109.47308 * 273.96198 * 28 27 26 44 44 H 1.09000 * 109.47705 * 33.96181 * 28 27 26 45 45 H 1.09001 * 109.47636 * 153.96589 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.0086 -0.0518 -2.4074 6 1 1.6406 0.9609 -2.4809 7 6 2.4718 -0.7059 -3.5408 8 7 2.9198 -1.9402 -3.4513 9 14 2.4580 0.1652 -5.1931 10 1 1.9094 1.5351 -5.0261 11 1 3.8436 0.2484 -5.7205 12 1 1.6104 -0.5950 -6.1465 13 6 2.0400 -0.7212 1.2492 14 1 1.7850 -1.7794 1.1899 15 6 1.3986 -0.1045 2.4962 16 6 2.0156 -0.7346 3.7469 17 6 3.5171 -0.4406 3.7806 18 6 4.1826 -1.0612 2.5481 19 7 3.4984 -0.5707 1.3440 20 6 4.1955 0.0061 0.3450 21 8 3.6093 0.5011 -0.5990 22 6 5.6646 0.0371 0.3962 23 6 6.4580 1.0505 0.9088 24 17 5.9299 2.5430 1.6213 25 6 7.7746 0.6153 0.7301 26 7 7.7348 -0.5606 0.1579 27 7 6.5223 -0.9317 -0.0463 28 6 6.1196 -2.1979 -0.6634 29 1 -0.3634 0.5137 0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 2.3485 -1.6002 -1.1303 33 1 3.2431 -2.3975 -4.2433 34 1 1.5784 0.9705 2.5039 35 1 0.3253 -0.2943 2.4849 36 1 1.8570 -1.8128 3.7263 37 1 1.5434 -0.3149 4.6353 38 1 3.9518 -0.8696 4.6834 39 1 3.6774 0.6375 3.7765 40 1 4.1022 -2.1471 2.5973 41 1 5.2329 -0.7716 2.5152 42 1 8.6664 1.1543 1.0140 43 1 6.1077 -2.0861 -1.7477 44 1 6.8280 -2.9787 -0.3865 45 1 5.1234 -2.4711 -0.3155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479824734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:23 Heat of formation + Delta-G solvation = 76.612827 kcal Electronic energy + Delta-G solvation = -30016.926178 eV Core-core repulsion = 26098.621828 eV Total energy + Delta-G solvation = -3918.304350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.62751 -41.34937 -38.20046 -37.59048 -36.91960 -34.39820 -34.17650 -33.70550 -31.68438 -31.46337 -29.41562 -28.13014 -26.62462 -25.92608 -24.34444 -23.64895 -22.75377 -21.66967 -21.33216 -20.33009 -19.10379 -18.30833 -17.56145 -16.96382 -16.74388 -16.71949 -16.09861 -15.64109 -15.55209 -15.48597 -15.14213 -14.87697 -14.69177 -14.31082 -14.21578 -14.07984 -13.83897 -13.61890 -13.59558 -13.43761 -12.99869 -12.88176 -12.86003 -12.67690 -12.53540 -12.40581 -12.12428 -11.96045 -11.71157 -11.62747 -11.54671 -11.38435 -11.23753 -10.80101 -10.38168 -10.05201 -9.71677 -9.49169 -8.52511 -7.78083 -4.94146 0.48614 0.81078 1.40110 1.41779 1.43580 1.50537 1.50567 1.93695 2.16166 2.64068 3.38281 3.55169 3.56209 3.83788 3.85877 3.99732 4.04635 4.12865 4.19335 4.31337 4.33076 4.36279 4.40062 4.42632 4.56055 4.60127 4.71958 4.77499 4.89574 4.94856 5.05234 5.11103 5.12404 5.18520 5.22146 5.29156 5.44334 5.49198 5.56009 5.59316 5.65372 5.88133 6.44080 6.49817 6.88846 7.38059 7.52644 8.25565 8.50417 9.46217 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009439 B = 0.006217 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.575657 B = 4503.027060 C = 6048.100484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.175 3.825 3 H 0.038 0.962 4 N -0.695 5.695 5 C -0.160 4.160 6 H 0.050 0.950 7 C -0.082 4.082 8 N -0.968 5.968 9 Si 0.943 3.057 10 H -0.280 1.280 11 H -0.307 1.307 12 H -0.296 1.296 13 C 0.152 3.848 14 H 0.071 0.929 15 C -0.122 4.122 16 C -0.112 4.112 17 C -0.126 4.126 18 C 0.109 3.891 19 N -0.598 5.598 20 C 0.548 3.452 21 O -0.462 6.462 22 C 0.001 3.999 23 C -0.140 4.140 24 Cl -0.021 7.021 25 C 0.026 3.974 26 N -0.292 5.292 27 N -0.267 5.267 28 C 0.098 3.902 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.366 0.634 33 H 0.240 0.760 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.224 0.776 43 H 0.070 0.930 44 H 0.128 0.872 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.602 0.653 20.314 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.067 3.933 3 H 0.056 0.944 4 N -0.333 5.333 5 C -0.294 4.294 6 H 0.068 0.932 7 C -0.272 4.272 8 N -0.623 5.623 9 Si 0.777 3.223 10 H -0.206 1.206 11 H -0.236 1.236 12 H -0.224 1.224 13 C 0.049 3.951 14 H 0.088 0.912 15 C -0.161 4.161 16 C -0.149 4.149 17 C -0.164 4.164 18 C -0.013 4.013 19 N -0.334 5.334 20 C 0.329 3.671 21 O -0.330 6.330 22 C -0.130 4.130 23 C -0.178 4.178 24 Cl 0.007 6.993 25 C -0.152 4.152 26 N -0.123 5.123 27 N -0.055 5.055 28 C -0.041 4.041 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.198 0.802 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.241 0.759 43 H 0.089 0.911 44 H 0.146 0.854 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.808 0.214 19.220 19.814 hybrid contribution -0.200 0.937 -1.433 1.724 sum 4.608 1.151 17.788 18.411 Atomic orbital electron populations 1.22409 0.97700 1.01046 1.00684 1.20584 0.91709 0.95836 0.85162 0.94390 1.42372 1.73924 1.13660 1.03390 1.19128 1.28670 0.95420 0.86140 0.93189 1.24994 1.05080 0.97576 0.99582 1.69719 1.52866 1.12180 1.27584 0.85458 0.76091 0.77954 0.82807 1.20577 1.23556 1.22400 1.21524 0.78246 0.99513 0.95788 0.91159 1.21984 1.00845 1.00127 0.93125 1.21502 0.94693 1.01419 0.97297 1.21871 0.96388 1.01089 0.97056 1.21814 0.96278 0.99149 0.84083 1.47794 1.07275 1.60090 1.18286 1.17240 0.83961 0.82701 0.83150 1.91324 1.67390 1.41293 1.32968 1.21714 0.93171 0.92651 1.05497 1.21326 0.93731 0.91896 1.10890 1.98319 1.90492 1.28940 1.81558 1.23974 0.96957 0.92624 1.01614 1.73186 1.03133 1.16480 1.19498 1.45678 1.02135 1.15455 1.42195 1.22227 1.02755 0.80582 0.98576 0.90593 0.93334 0.95196 0.80248 0.95080 0.92303 0.88989 0.90890 0.89690 0.88464 0.92331 0.90510 0.91197 0.75917 0.91142 0.85393 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.48 8.86 71.98 0.64 -4.84 16 2 C 0.18 6.91 1.78 44.99 0.08 6.99 16 3 H 0.04 1.74 6.46 -2.38 -0.02 1.72 16 4 N -0.69 -34.51 3.14 -322.94 -1.01 -35.53 16 5 C -0.16 -9.21 8.05 84.03 0.68 -8.53 16 6 H 0.05 2.97 7.83 -2.91 -0.02 2.95 16 7 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 8 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 9 Si 0.94 49.70 29.55 68.60 2.03 51.73 16 10 H -0.28 -14.41 7.11 99.48 0.71 -13.70 16 11 H -0.31 -16.50 7.11 99.48 0.71 -15.80 16 12 H -0.30 -15.39 7.11 99.48 0.71 -14.69 16 13 C 0.15 4.56 2.58 44.97 0.12 4.68 16 14 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 15 C -0.12 -2.64 4.62 30.67 0.14 -2.50 16 16 C -0.11 -1.75 5.88 30.62 0.18 -1.57 16 17 C -0.13 -2.11 6.08 30.67 0.19 -1.92 16 18 C 0.11 2.41 6.31 86.37 0.55 2.96 16 19 N -0.60 -18.10 2.97 -799.30 -2.38 -20.48 16 20 C 0.55 21.00 6.49 86.55 0.56 21.56 16 21 O -0.46 -22.56 9.71 -4.17 -0.04 -22.60 16 22 C 0.00 0.05 4.76 40.76 0.19 0.24 16 23 C -0.14 -4.33 6.72 22.72 0.15 -4.18 16 24 Cl -0.02 -0.60 29.24 -2.72 -0.08 -0.68 16 25 C 0.03 0.71 12.04 85.22 1.03 1.73 16 26 N -0.29 -8.96 11.89 -57.06 -0.68 -9.64 16 27 N -0.27 -8.80 3.75 -355.93 -1.34 -10.14 16 28 C 0.10 2.98 11.20 127.77 1.43 4.41 16 29 H 0.08 2.04 6.47 -2.38 -0.02 2.03 16 30 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.03 1.16 8.10 -2.39 -0.02 1.14 16 32 H 0.37 19.32 7.74 -92.71 -0.72 18.60 16 33 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.74 6.70 -2.39 -0.02 1.72 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.66 6.26 -2.39 -0.01 1.65 16 42 H 0.22 4.12 8.06 -2.91 -0.02 4.10 16 43 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.13 2.86 8.14 -2.39 -0.02 2.85 16 45 H 0.09 2.85 7.69 -2.39 -0.02 2.83 16 Total: -1.00 -72.41 370.53 3.48 -68.94 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.29 Total: 22.39 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 6.40 Total: 14.62 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -5.12 Total: -134.40 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.04 Total: -22.60 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.03 Total: 51.73 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -72.41 3.48 -68.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479824734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.550 kcal (2) G-P(sol) polarization free energy of solvation -72.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds