Wall clock time and date at job start Sat Apr 11 2020 06:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46747 * 2 1 4 4 N 1.46496 * 109.46979 * 119.99791 * 2 1 3 5 5 C 1.36943 * 119.99825 * 275.00153 * 4 2 1 6 6 H 1.07991 * 120.00041 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99587 * 179.72909 * 5 4 2 8 8 N 1.31616 * 119.99567 * 180.27816 * 7 5 4 9 9 Si 1.86799 * 120.00049 * 0.26769 * 7 5 4 10 10 H 1.48505 * 109.46638 * 90.00623 * 9 7 5 11 11 H 1.48498 * 109.47045 * 210.00354 * 9 7 5 12 12 H 1.48499 * 109.47470 * 330.00451 * 9 7 5 13 13 C 1.52998 * 109.46879 * 240.00120 * 2 1 3 14 14 H 1.08990 * 109.59443 * 53.79133 * 13 2 1 15 15 C 1.53197 * 109.58592 * 293.50471 * 13 2 1 16 16 C 1.53072 * 109.29552 * 185.72678 * 15 13 2 17 17 C 1.53036 * 109.65978 * 61.15255 * 16 15 13 18 18 C 1.53197 * 109.31569 * 298.69872 * 17 16 15 19 19 N 1.46927 * 108.76983 * 54.63491 * 18 17 16 20 20 C 1.34776 * 120.62939 * 126.37112 * 19 18 17 21 21 O 1.21645 * 120.00062 * 184.71522 * 20 19 18 22 22 C 1.47034 * 119.99642 * 4.71917 * 20 19 18 23 23 C 1.38542 * 126.90784 * 90.11049 * 22 20 19 24 24 Cl 1.73605 * 127.33516 * 359.97323 * 23 22 20 25 25 C 1.39799 * 105.32794 * 179.97438 * 23 22 20 26 26 N 1.30840 * 107.88044 * 359.97438 * 25 23 22 27 27 N 1.28436 * 110.97225 * 359.73663 * 26 25 23 28 28 C 1.46506 * 125.18518 * 180.25787 * 27 26 25 29 29 H 1.08993 * 109.47177 * 305.02908 * 1 2 3 30 30 H 1.09005 * 109.46976 * 65.02846 * 1 2 3 31 31 H 1.08996 * 109.46844 * 185.02658 * 1 2 3 32 32 H 0.96999 * 120.00028 * 94.99970 * 4 2 1 33 33 H 0.97000 * 119.99546 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.49504 * 305.53198 * 15 13 2 35 35 H 1.09001 * 109.49451 * 65.62842 * 15 13 2 36 36 H 1.08999 * 109.34707 * 301.12805 * 16 15 13 37 37 H 1.09003 * 109.45187 * 181.24426 * 16 15 13 38 38 H 1.09004 * 109.49989 * 178.75236 * 17 16 15 39 39 H 1.09001 * 109.52737 * 58.66910 * 17 16 15 40 40 H 1.08998 * 109.58331 * 294.85053 * 18 17 16 41 41 H 1.08995 * 109.58708 * 174.42087 * 18 17 16 42 42 H 1.07999 * 126.06262 * 179.97438 * 25 23 22 43 43 H 1.09002 * 109.47090 * 275.19168 * 28 27 26 44 44 H 1.08996 * 109.46923 * 35.18477 * 28 27 26 45 45 H 1.08994 * 109.47414 * 155.18774 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8918 1.0404 2.4243 7 6 2.6064 -0.6631 3.5106 8 7 2.7268 -0.0077 4.6456 9 14 3.0506 -2.4755 3.4267 10 1 4.4850 -2.6175 3.0694 11 1 2.8047 -3.1071 4.7480 12 1 2.2153 -3.1428 2.3961 13 6 2.0400 -0.7212 -1.2493 14 1 1.5899 -0.2771 -2.1370 15 6 1.6684 -2.2055 -1.1730 16 6 2.3030 -2.9470 -2.3522 17 6 3.8265 -2.8229 -2.2787 18 6 4.2195 -1.3449 -2.3693 19 7 3.5023 -0.6002 -1.3254 20 6 4.1731 0.1788 -0.4538 21 8 3.5793 0.7221 0.4582 22 6 5.6228 0.3720 -0.6056 23 6 6.2581 1.3638 -1.3350 24 17 5.5143 2.6325 -2.2576 25 6 7.6257 1.1254 -1.1700 26 7 7.7605 0.0747 -0.4020 27 7 6.6150 -0.3870 -0.0494 28 6 6.4036 -1.5521 0.8134 29 1 -0.3633 0.5898 0.8415 30 1 -0.3633 0.4339 -0.9316 31 1 -0.3633 -1.0237 0.0900 32 1 2.2490 -1.6317 1.1527 33 1 3.0461 -0.4661 5.4386 34 1 2.0404 -2.6261 -0.2386 35 1 0.5844 -2.3117 -1.2142 36 1 1.9478 -2.5113 -3.2860 37 1 2.0221 -3.9995 -2.3127 38 1 4.2766 -3.3703 -3.1070 39 1 4.1807 -3.2363 -1.3344 40 1 3.9472 -0.9539 -3.3496 41 1 5.2941 -1.2426 -2.2184 42 1 8.4287 1.7056 -1.6001 43 1 6.4349 -2.4603 0.2115 44 1 7.1870 -1.5906 1.5702 45 1 5.4317 -1.4721 1.3002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479824738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:26 Heat of formation + Delta-G solvation = 77.269156 kcal Electronic energy + Delta-G solvation = -30294.933307 eV Core-core repulsion = 26376.657417 eV Total energy + Delta-G solvation = -3918.275890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.70053 -41.48584 -38.33676 -37.62036 -37.05287 -34.46153 -34.17226 -33.81165 -31.92488 -31.55008 -29.99682 -28.23929 -26.60530 -25.57218 -24.79609 -23.68169 -22.77347 -21.87269 -21.33288 -20.14999 -19.61827 -18.43134 -17.68634 -17.06539 -16.93306 -16.45327 -16.35429 -15.88258 -15.47495 -15.39737 -15.31236 -15.02058 -14.68782 -14.60743 -14.24126 -14.15843 -14.01709 -13.87615 -13.60726 -13.35227 -13.27941 -12.93811 -12.82832 -12.66751 -12.64620 -12.38983 -12.08157 -12.00785 -11.79740 -11.67072 -11.58665 -11.47578 -11.34895 -10.88527 -10.43232 -10.05182 -9.76378 -9.55553 -8.94858 -7.84654 -5.10639 0.40923 0.74241 1.25032 1.33270 1.34032 1.42413 1.43863 1.83953 2.05012 2.55014 3.27858 3.45504 3.46215 3.74779 3.79688 3.91270 3.93239 4.01191 4.05659 4.13701 4.27050 4.27692 4.32955 4.34796 4.39630 4.57635 4.64108 4.77026 4.81699 4.93515 4.96726 5.04254 5.08260 5.13189 5.21083 5.23285 5.42531 5.45792 5.49244 5.51957 5.81158 5.97928 6.36155 6.39608 6.82599 7.22639 7.30670 8.01093 8.22919 9.40244 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010035 B = 0.006235 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.574681 B = 4489.681761 C = 5224.212567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 H 0.057 0.943 4 N -0.725 5.725 5 C -0.147 4.147 6 H 0.037 0.963 7 C -0.090 4.090 8 N -1.003 6.003 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.307 1.307 12 H -0.255 1.255 13 C 0.148 3.852 14 H 0.103 0.897 15 C -0.131 4.131 16 C -0.110 4.110 17 C -0.131 4.131 18 C 0.109 3.891 19 N -0.594 5.594 20 C 0.560 3.440 21 O -0.479 6.479 22 C -0.006 4.006 23 C -0.135 4.135 24 Cl -0.019 7.019 25 C 0.029 3.971 26 N -0.289 5.289 27 N -0.269 5.269 28 C 0.083 3.917 29 H 0.025 0.975 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.358 0.642 33 H 0.247 0.753 34 H 0.040 0.960 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.226 0.774 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.876 -6.832 -23.050 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.059 3.941 3 H 0.075 0.925 4 N -0.368 5.368 5 C -0.279 4.279 6 H 0.056 0.944 7 C -0.278 4.278 8 N -0.658 5.658 9 Si 0.768 3.232 10 H -0.197 1.197 11 H -0.235 1.235 12 H -0.180 1.180 13 C 0.045 3.955 14 H 0.121 0.879 15 C -0.170 4.170 16 C -0.148 4.148 17 C -0.169 4.169 18 C -0.012 4.012 19 N -0.330 5.330 20 C 0.342 3.658 21 O -0.349 6.349 22 C -0.137 4.137 23 C -0.173 4.173 24 Cl 0.010 6.990 25 C -0.149 4.149 26 N -0.119 5.119 27 N -0.057 5.057 28 C -0.057 4.057 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.193 0.807 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.243 0.757 43 H 0.137 0.863 44 H 0.128 0.872 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.246 -7.099 -21.909 23.862 hybrid contribution -0.305 0.037 0.785 0.843 sum 5.941 -7.062 -21.124 23.052 Atomic orbital electron populations 1.22379 0.97574 1.01343 1.00676 1.20773 0.91714 0.96784 0.84796 0.92508 1.42685 1.79189 1.08218 1.06750 1.18721 1.29879 0.92899 0.86442 0.94447 1.25311 1.05151 1.01772 0.95532 1.69911 1.57942 1.37033 1.00954 0.85638 0.78953 0.82111 0.76452 1.19736 1.23511 1.18024 1.21697 0.78247 0.96972 0.98545 0.87901 1.22013 1.02093 0.93836 0.99049 1.21499 0.94278 1.00994 0.97980 1.21938 0.97313 0.94759 1.02935 1.21870 0.96075 0.92270 0.91035 1.47906 1.07366 1.45645 1.32053 1.17296 0.84221 0.81709 0.82536 1.91257 1.66430 1.46856 1.30338 1.21638 0.91642 0.97659 1.02740 1.21340 0.93549 0.96525 1.05879 1.98330 1.82071 1.47792 1.70845 1.24007 0.94899 0.96018 0.99955 1.73211 1.07922 1.14080 1.16685 1.45597 1.01729 1.23103 1.35244 1.22427 1.04249 0.84685 0.94306 0.95555 0.90754 0.92561 0.80693 0.94456 0.94085 0.89200 0.89618 0.90394 0.87930 0.93140 0.89014 0.91289 0.75740 0.86341 0.87186 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.34 9.16 71.98 0.66 -4.68 16 2 C 0.17 6.36 1.88 44.99 0.08 6.44 16 3 H 0.06 2.59 5.90 -7.19 -0.04 2.55 16 4 N -0.72 -33.71 3.42 -322.94 -1.11 -34.82 16 5 C -0.15 -8.73 8.46 84.03 0.71 -8.02 16 6 H 0.04 2.56 8.06 -2.92 -0.02 2.54 16 7 C -0.09 -5.54 5.50 84.86 0.47 -5.07 16 8 N -1.00 -68.23 13.97 21.65 0.30 -67.93 16 9 Si 0.94 46.23 27.74 68.60 1.90 48.13 16 10 H -0.27 -12.26 6.77 99.48 0.67 -11.59 16 11 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 12 H -0.26 -11.25 6.51 99.48 0.65 -10.60 16 13 C 0.15 4.04 2.72 44.98 0.12 4.16 16 14 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 15 C -0.13 -3.04 4.88 30.68 0.15 -2.89 16 16 C -0.11 -1.68 5.88 30.63 0.18 -1.50 16 17 C -0.13 -2.06 6.08 30.67 0.19 -1.87 16 18 C 0.11 2.13 6.32 86.36 0.55 2.68 16 19 N -0.59 -16.64 2.97 -799.31 -2.38 -19.02 16 20 C 0.56 20.37 6.49 86.55 0.56 20.93 16 21 O -0.48 -22.82 9.84 -4.17 -0.04 -22.86 16 22 C -0.01 -0.18 4.66 40.76 0.19 0.01 16 23 C -0.13 -3.92 6.89 22.72 0.16 -3.77 16 24 Cl -0.02 -0.50 29.24 -2.72 -0.08 -0.58 16 25 C 0.03 0.73 12.04 85.22 1.03 1.76 16 26 N -0.29 -8.28 11.90 -57.07 -0.68 -8.96 16 27 N -0.27 -8.32 3.75 -355.92 -1.34 -9.65 16 28 C 0.08 2.33 11.22 127.77 1.43 3.76 16 29 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.06 1.75 7.00 -2.39 -0.02 1.73 16 32 H 0.36 15.97 3.48 -92.71 -0.32 15.65 16 33 H 0.25 16.13 8.31 -92.71 -0.77 15.36 16 34 H 0.04 1.20 6.04 -2.38 -0.01 1.19 16 35 H 0.09 1.88 7.02 -2.39 -0.02 1.86 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 38 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.45 6.38 -2.39 -0.02 1.43 16 42 H 0.23 3.77 8.06 -2.91 -0.02 3.74 16 43 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 45 H 0.07 2.50 7.32 -2.39 -0.02 2.48 16 Total: -1.00 -80.35 364.36 3.63 -76.72 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.57 Total: 27.01 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 6.47 Total: 11.95 kcal Atomic # 7 Polarization: -135.18 SS G_CDS: -5.19 Total: -140.37 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.04 Total: -22.86 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.90 Total: 48.13 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -80.35 3.63 -76.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479824738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.985 kcal (2) G-P(sol) polarization free energy of solvation -80.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds