Wall clock time and date at job start Sat Apr 11 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46879 * 2 1 4 4 N 1.39922 * 125.74872 * 269.99590 * 3 2 1 5 5 C 1.30413 * 108.95977 * 179.71604 * 4 3 2 6 6 C 1.50698 * 125.98248 * 180.26516 * 5 4 3 7 7 C 1.41343 * 108.04735 * 0.44911 * 5 4 3 8 8 C 1.47300 * 126.43989 * 179.81470 * 7 5 4 9 9 O 1.21618 * 119.99899 * 269.71915 * 8 7 5 10 10 N 1.34779 * 119.99910 * 89.71563 * 8 7 5 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 H 1.08991 * 109.47625 * 64.99762 * 12 11 10 14 14 N 1.46504 * 109.47054 * 304.99499 * 12 11 10 15 15 C 1.36929 * 119.99940 * 155.00291 * 14 12 11 16 16 H 1.08007 * 120.00260 * 359.97438 * 15 14 12 17 17 C 1.38808 * 120.00410 * 180.02562 * 15 14 12 18 18 N 1.31625 * 119.99828 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00548 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47495 * 89.99884 * 19 17 15 21 21 H 1.48496 * 109.47323 * 209.99857 * 19 17 15 22 22 H 1.48503 * 109.46873 * 329.99888 * 19 17 15 23 23 C 1.53006 * 109.46846 * 185.00008 * 12 11 10 24 24 C 1.52995 * 117.49555 * 248.74420 * 23 12 11 25 25 C 1.52995 * 117.49792 * 180.08660 * 23 12 11 26 26 C 1.34351 * 125.74717 * 90.00578 * 3 2 1 27 27 Cl 1.73599 * 126.31871 * 359.97438 * 26 3 2 28 28 H 1.08994 * 109.47247 * 59.99812 * 1 2 3 29 29 H 1.08999 * 109.46683 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46717 * 299.99726 * 1 2 3 31 31 H 1.09003 * 109.46717 * 240.00273 * 2 1 3 32 32 H 1.08994 * 109.47247 * 120.00188 * 2 1 3 33 33 H 1.08995 * 109.47021 * 270.22216 * 6 5 4 34 34 H 1.09008 * 109.46764 * 30.21538 * 6 5 4 35 35 H 1.08996 * 109.47512 * 150.21515 * 6 5 4 36 36 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 38 38 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 39 39 H 0.96996 * 120.00090 * 335.00419 * 14 12 11 40 40 H 0.96994 * 120.00251 * 180.02562 * 18 17 15 41 41 H 1.08997 * 115.54853 * 34.41146 * 23 12 11 42 42 H 1.08998 * 117.49984 * 359.97438 * 24 23 12 43 43 H 1.09006 * 117.49830 * 145.02021 * 24 23 12 44 44 H 1.09000 * 117.49832 * 214.98051 * 25 23 12 45 45 H 1.09001 * 117.49910 * 359.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2909 2.1519 -1.1356 5 6 2.7012 3.3311 -0.7589 6 6 3.0938 4.4650 -1.6706 7 6 2.7174 3.3584 0.6542 8 6 3.1188 4.4934 1.5028 9 8 4.2776 4.6112 1.8527 10 7 2.2019 5.4015 1.8916 11 6 2.6012 6.5308 2.7351 12 6 1.3799 7.4038 3.0302 13 1 0.6639 6.8378 3.6260 14 7 0.7535 7.8094 1.7694 15 6 -0.5761 8.1353 1.7393 16 1 -1.1632 8.0929 2.6449 17 6 -1.1698 8.5190 0.5447 18 7 -0.4545 8.5701 -0.5591 19 14 -2.9835 8.9643 0.5037 20 1 -3.1423 10.4180 0.7619 21 1 -3.5441 8.6347 -0.8313 22 1 -3.7060 8.1942 1.5478 23 6 1.8178 8.6481 3.8055 24 6 1.3761 8.7622 5.2658 25 6 0.7333 9.6528 4.1996 26 6 2.2801 2.1212 1.0904 27 17 2.1015 1.6174 2.7420 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 4.1583 4.3988 -1.8951 34 1 2.5225 4.4009 -2.5968 35 1 2.8844 5.4153 -1.1796 36 1 1.2777 5.3078 1.6121 37 1 3.3550 7.1231 2.2165 38 1 3.0144 6.1563 3.6717 39 1 1.2806 7.8470 0.9561 40 1 -0.8693 8.8386 -1.3938 41 1 2.7993 9.0435 3.5441 42 1 0.7732 7.9511 5.6741 43 1 2.0669 9.2332 5.9652 44 1 1.0015 10.7093 4.1979 45 1 -0.2920 9.4276 3.9063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480066051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:37 Heat of formation + Delta-G solvation = 64.937668 kcal Electronic energy + Delta-G solvation = -27659.414363 eV Core-core repulsion = 23740.603740 eV Total energy + Delta-G solvation = -3918.810623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.50589 -38.99280 -37.45972 -37.12109 -35.05633 -34.57144 -33.33116 -31.44861 -31.08987 -30.06823 -28.01608 -27.62742 -24.45679 -23.49036 -22.57347 -21.72497 -21.53414 -20.48526 -19.95770 -19.37945 -17.85725 -17.16941 -16.44369 -15.88119 -15.42101 -15.25238 -14.97860 -14.73105 -14.47481 -14.22437 -13.82285 -13.55549 -13.36175 -13.15978 -12.99515 -12.86517 -12.76031 -12.49272 -12.29159 -11.99540 -11.88376 -11.74386 -11.58381 -11.36903 -11.15187 -10.87099 -10.86110 -10.76200 -10.70502 -10.12720 -9.93205 -9.78145 -9.48011 -9.31406 -9.28832 -8.97547 -8.66492 -8.58281 -7.03883 -5.81296 -3.10268 1.19464 1.38060 2.33994 2.36644 2.86783 3.39342 3.45004 3.46778 3.68103 4.20547 4.42331 4.59878 4.61931 4.64853 4.85300 4.95249 5.17967 5.24599 5.31049 5.37198 5.41377 5.49849 5.53294 5.61813 5.73366 5.77611 5.77909 5.87846 5.92110 5.95947 6.03874 6.08834 6.18994 6.36963 6.43070 6.52217 6.55643 6.61849 6.78536 6.93491 6.99169 7.41981 7.65478 7.98191 8.35755 8.60344 9.48200 10.02260 10.38681 11.40554 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009959 B = 0.003768 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.762464 B = 7430.110432 C = 8579.690208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.122 3.878 3 N -0.353 5.353 4 N -0.275 5.275 5 C 0.127 3.873 6 C -0.079 4.079 7 C -0.249 4.249 8 C 0.594 3.406 9 O -0.543 6.543 10 N -0.700 5.700 11 C 0.118 3.882 12 C 0.193 3.807 13 H 0.055 0.945 14 N -0.716 5.716 15 C -0.236 4.236 16 H 0.070 0.930 17 C -0.008 4.008 18 N -0.927 5.927 19 Si 0.901 3.099 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.283 1.283 23 C -0.158 4.158 24 C -0.197 4.197 25 C -0.156 4.156 26 C 0.156 3.844 27 Cl 0.007 6.993 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.412 0.588 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.523 -15.141 3.783 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.135 5.135 4 N -0.098 5.098 5 C -0.039 4.039 6 C -0.138 4.138 7 C -0.265 4.265 8 C 0.378 3.622 9 O -0.420 6.420 10 N -0.351 5.351 11 C -0.006 4.006 12 C 0.083 3.917 13 H 0.073 0.927 14 N -0.357 5.357 15 C -0.367 4.367 16 H 0.088 0.912 17 C -0.204 4.204 18 N -0.575 5.575 19 Si 0.732 3.268 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.209 1.209 23 C -0.180 4.180 24 C -0.234 4.234 25 C -0.193 4.193 26 C 0.000 4.000 27 Cl 0.035 6.965 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.248 0.752 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.813 -15.981 3.206 16.995 hybrid contribution -1.219 0.720 0.448 1.485 sum 3.593 -15.261 3.653 16.098 Atomic orbital electron populations 1.22202 0.93499 1.03407 1.03873 1.21854 0.95914 0.77072 1.04957 1.48550 1.50457 1.12520 1.01977 1.77259 1.23433 1.04078 1.05019 1.22341 0.95843 0.94028 0.91691 1.20340 1.02114 0.93483 0.97837 1.19858 1.17643 0.94783 0.94252 1.17065 0.85126 0.81108 0.78942 1.90760 1.18581 1.76187 1.56502 1.45967 1.12759 1.25089 1.51280 1.21636 0.97923 0.86957 0.94081 1.20053 0.91741 0.90724 0.89229 0.92734 1.42431 1.08283 1.80448 1.04508 1.19136 0.85561 1.38015 0.94020 0.91219 1.24689 0.97678 1.02354 0.95724 1.69648 1.35007 1.54016 0.98857 0.86295 0.85470 0.78267 0.76760 1.21757 1.21882 1.20865 1.23027 0.98803 1.01089 0.95066 1.22959 1.04628 1.03672 0.92180 1.22775 0.99736 0.95350 1.01455 1.21880 1.02562 0.92111 0.83460 1.98422 1.96041 1.90956 1.11105 0.91102 0.90125 0.91651 0.87876 0.88682 0.89879 0.89947 0.89206 0.75191 0.91583 0.91547 0.78012 0.93512 0.89097 0.89583 0.90111 0.90251 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.24 37.16 0.38 -0.96 16 2 C 0.12 1.05 6.97 -4.04 -0.03 1.02 16 3 N -0.35 -4.56 3.58 -57.57 -0.21 -4.77 16 4 N -0.27 -4.10 12.49 33.90 0.42 -3.68 16 5 C 0.13 1.98 7.26 -82.02 -0.60 1.38 16 6 C -0.08 -1.08 10.28 36.00 0.37 -0.71 16 7 C -0.25 -4.04 5.88 -105.02 -0.62 -4.66 16 8 C 0.59 10.48 7.20 -12.57 -0.09 10.39 16 9 O -0.54 -11.00 17.11 5.26 0.09 -10.91 16 10 N -0.70 -11.95 5.38 -61.42 -0.33 -12.28 16 11 C 0.12 2.00 5.22 -4.04 -0.02 1.98 16 12 C 0.19 3.52 2.70 -67.92 -0.18 3.33 16 13 H 0.05 1.02 7.84 -51.93 -0.41 0.61 16 14 N -0.72 -15.99 4.54 -53.42 -0.24 -16.24 16 15 C -0.24 -5.92 8.63 -15.06 -0.13 -6.05 16 16 H 0.07 1.72 6.91 -52.48 -0.36 1.35 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 18 N -0.93 -26.23 13.06 55.49 0.72 -25.50 16 19 Si 0.90 21.37 29.55 -169.99 -5.02 16.35 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.16 -2.70 5.36 -90.62 -0.49 -3.19 16 24 C -0.20 -2.94 10.18 -26.70 -0.27 -3.21 16 25 C -0.16 -2.72 9.78 -26.70 -0.26 -2.98 16 26 C 0.16 2.22 7.54 -16.43 -0.12 2.10 16 27 Cl 0.01 0.08 28.56 -51.86 -1.48 -1.40 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.64 7.77 -51.93 -0.40 0.24 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 35 H 0.09 1.34 8.01 -51.93 -0.42 0.92 16 36 H 0.41 7.30 8.12 -40.82 -0.33 6.97 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.39 9.40 7.80 -40.82 -0.32 9.09 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.09 1.52 8.11 -51.93 -0.42 1.10 16 42 H 0.09 1.24 8.05 -51.93 -0.42 0.83 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.10 2.04 6.23 -51.93 -0.32 1.72 16 LS Contribution 396.89 15.07 5.98 5.98 Total: -1.00 -30.33 396.89 -8.98 -39.31 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -6.76 Total: 14.99 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -2.15 Total: -1.86 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 0.37 Total: -62.46 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -1.48 Total: -1.40 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.33 -8.98 -39.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480066051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.250 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds