Wall clock time and date at job start Sat Apr 11 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47329 * 2 1 4 4 N 1.46898 * 109.47646 * 120.00352 * 2 1 3 5 5 C 1.46901 * 110.99834 * 274.99796 * 4 2 1 6 6 H 1.09009 * 110.64208 * 31.86014 * 5 4 2 7 7 C 1.55159 * 110.71973 * 154.99392 * 5 4 2 8 8 C 1.54910 * 101.58155 * 153.86660 * 7 5 4 9 9 N 1.47426 * 104.83073 * 322.99503 * 8 7 5 10 10 C 1.34784 * 125.64612 * 204.09218 * 9 8 7 11 11 O 1.21283 * 119.99667 * 180.02562 * 10 9 8 12 12 C 1.50693 * 119.99987 * 0.02562 * 10 9 8 13 13 S 1.81005 * 109.47250 * 180.02562 * 12 10 9 14 14 C 1.76191 * 100.00092 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00297 * 359.97438 * 14 13 12 16 16 C 1.38799 * 120.00144 * 180.02562 * 14 13 12 17 17 N 1.31636 * 119.99514 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00351 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47061 * 60.00426 * 18 16 14 20 20 H 1.48504 * 109.47072 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47093 * 300.00034 * 18 16 14 22 22 C 1.47019 * 108.70490 * 24.35510 * 9 8 7 23 23 C 1.50701 * 109.47086 * 240.00448 * 2 1 3 24 24 N 1.31077 * 126.65824 * 285.02316 * 23 2 1 25 25 N 1.28838 * 107.98814 * 179.97438 * 24 23 2 26 26 N 1.28735 * 109.40141 * 359.97438 * 25 24 23 27 27 N 1.29022 * 108.80616 * 359.74844 * 26 25 24 28 28 C 1.46502 * 126.43415 * 180.24501 * 27 26 25 29 29 H 1.09003 * 109.47614 * 59.99460 * 1 2 3 30 30 H 1.08998 * 109.47329 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47106 * 299.99741 * 1 2 3 32 32 H 1.00892 * 111.00166 * 151.04477 * 4 2 1 33 33 H 1.08997 * 111.00081 * 35.79380 * 7 5 4 34 34 H 1.08998 * 111.00759 * 271.94244 * 7 5 4 35 35 H 1.09002 * 110.36832 * 204.15743 * 8 7 5 36 36 H 1.08996 * 110.36615 * 81.83198 * 8 7 5 37 37 H 1.09002 * 109.47106 * 299.99491 * 12 10 9 38 38 H 1.09003 * 109.47551 * 59.99749 * 12 10 9 39 39 H 0.97000 * 119.99618 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.88426 * 118.13460 * 22 9 8 41 41 H 1.09007 * 109.88165 * 239.29472 * 22 9 8 42 42 H 1.08991 * 109.47455 * 270.17249 * 28 27 26 43 43 H 1.08994 * 109.47195 * 30.18291 * 28 27 26 44 44 H 1.09002 * 109.46611 * 150.17339 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0826 0.2225 2.3468 6 1 1.2981 0.9765 2.2805 7 6 1.9780 -0.5623 3.6812 8 6 2.7193 0.3845 4.6578 9 7 3.8293 0.9478 3.8677 10 6 4.9792 1.4408 4.3690 11 8 5.8268 1.8813 3.6217 12 6 5.2117 1.4446 5.8579 13 16 6.8336 2.1651 6.2135 14 6 6.8417 2.0480 7.9715 15 1 5.9937 1.6235 8.4884 16 6 7.9373 2.5023 8.6923 17 7 8.9703 3.0211 8.0624 18 14 7.9456 2.3789 10.5562 19 1 7.8169 0.9553 10.9586 20 1 9.2208 2.9282 11.0830 21 1 6.8062 3.1545 11.1087 22 6 3.4715 0.8885 2.4430 23 6 2.0322 -0.7103 -1.2305 24 7 2.0361 -2.0042 -1.4405 25 7 2.5433 -2.2166 -2.6057 26 7 2.8625 -1.0920 -3.1446 27 7 2.5577 -0.1390 -2.3301 28 6 2.7512 1.2953 -2.5575 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 2.9173 -1.1205 1.0286 33 1 2.4852 -1.5244 3.6093 34 1 0.9372 -0.6923 3.9775 35 1 3.1058 -0.1756 5.5093 36 1 2.0531 1.1783 4.9956 37 1 4.4369 2.0366 6.3451 38 1 5.1777 0.4219 6.2336 39 1 9.7362 3.3383 8.5661 40 1 3.4313 1.8958 2.0286 41 1 4.2051 0.2915 1.9010 42 1 3.7363 1.5908 -2.1968 43 1 2.6760 1.5074 -3.6240 44 1 1.9849 1.8548 -2.0210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480105083.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:44 Heat of formation + Delta-G solvation = 95.429552 kcal Electronic energy + Delta-G solvation = -26645.320023 eV Core-core repulsion = 22762.168084 eV Total energy + Delta-G solvation = -3883.151939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.60397 -40.10797 -38.21698 -36.48591 -35.98106 -33.08261 -32.46164 -31.34949 -29.95936 -29.62050 -28.92100 -27.29562 -25.52669 -25.02031 -23.76405 -23.22117 -21.50572 -21.13583 -19.45645 -18.08782 -17.74686 -17.71340 -17.16511 -16.77294 -16.24066 -15.52761 -15.14355 -14.83246 -14.79664 -14.29588 -14.25215 -14.05492 -14.00950 -13.73369 -13.46380 -13.07290 -12.88540 -12.72125 -12.61566 -12.54815 -12.45615 -12.21935 -11.91141 -11.87037 -11.76392 -11.42052 -11.31186 -11.13456 -11.07617 -11.06138 -10.79875 -10.49904 -9.86571 -9.55582 -9.10426 -9.09049 -8.61918 -8.28696 -6.54869 -6.24827 -3.96170 0.75179 1.47613 1.84779 2.77427 2.96581 3.19579 3.21279 3.25741 3.27615 3.35313 3.56950 3.78719 4.01702 4.16947 4.24326 4.27608 4.30404 4.48049 4.60195 4.65769 4.68838 4.91518 4.94352 4.98172 5.05416 5.09030 5.10403 5.21115 5.28157 5.36565 5.41837 5.52140 5.55081 5.61679 5.68318 5.70416 5.79750 5.88297 6.08123 6.27979 6.36929 6.66927 7.54240 7.56525 8.21285 8.31708 8.45628 9.20309 10.82569 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023694 B = 0.002001 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.435083 B =13990.528836 C =14601.263820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.171 3.829 3 H 0.072 0.928 4 N -0.655 5.655 5 C 0.074 3.926 6 H 0.100 0.900 7 C -0.117 4.117 8 C 0.098 3.902 9 N -0.624 5.624 10 C 0.548 3.452 11 O -0.517 6.517 12 C -0.146 4.146 13 S -0.062 6.062 14 C -0.536 4.536 15 H 0.073 0.927 16 C 0.074 3.926 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.083 3.917 23 C 0.173 3.827 24 N -0.277 5.277 25 N -0.076 5.076 26 N -0.093 5.093 27 N -0.306 5.306 28 C 0.074 3.926 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.354 0.646 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.935 -2.931 -17.181 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.058 3.942 3 H 0.090 0.910 4 N -0.288 5.288 5 C -0.036 4.036 6 H 0.118 0.882 7 C -0.155 4.155 8 C -0.026 4.026 9 N -0.362 5.362 10 C 0.337 3.663 11 O -0.391 6.391 12 C -0.297 4.297 13 S 0.165 5.835 14 C -0.684 4.684 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.746 3.254 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.043 4.043 23 C -0.106 4.106 24 N -0.126 5.126 25 N -0.070 5.070 26 N -0.079 5.079 27 N -0.108 5.108 28 C -0.068 4.068 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.175 0.825 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.129 0.871 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.739 -3.579 -18.881 27.549 hybrid contribution -0.187 0.923 2.127 2.326 sum -19.926 -2.656 -16.755 26.169 Atomic orbital electron populations 1.21852 0.91276 1.04321 1.02278 1.20033 0.97327 0.94173 0.82635 0.91045 1.60690 1.34838 1.30974 1.02321 1.22806 0.95721 0.93926 0.91194 0.88244 1.22775 1.01587 0.98756 0.92397 1.22386 0.88389 0.96490 0.95298 1.48411 1.17733 1.63548 1.06476 1.20101 0.79434 0.76225 0.90557 1.90707 1.42738 1.45087 1.60544 1.23501 1.07461 1.05503 0.93195 1.85401 1.11773 1.78997 1.07326 1.22807 1.06462 1.47874 0.91231 0.90930 1.25000 0.94568 0.94471 0.99547 1.70010 1.06040 1.38043 1.36200 0.86214 0.77621 0.78641 0.82970 1.19893 1.20799 1.19908 1.22620 0.96228 1.01118 0.84315 1.26122 1.00519 0.90706 0.93240 1.75085 1.16700 1.11282 1.09579 1.78697 1.11376 1.15308 1.01581 1.78928 1.18597 0.92334 1.18011 1.48485 1.40020 1.10505 1.11783 1.22491 1.05399 0.72453 1.06445 0.92306 0.90325 0.90575 0.82487 0.89748 0.89182 0.89890 0.91146 0.89207 0.89190 0.92099 0.91704 0.91875 0.87994 0.87101 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.62 9.38 37.15 0.35 -0.28 16 2 C 0.17 0.94 2.77 -68.87 -0.19 0.75 16 3 H 0.07 0.25 6.92 -51.93 -0.36 -0.11 16 4 N -0.66 -4.47 6.19 -99.03 -0.61 -5.08 16 5 C 0.07 0.49 3.01 -65.87 -0.20 0.29 16 6 H 0.10 0.49 7.23 -51.92 -0.38 0.12 16 7 C -0.12 -0.81 6.77 -24.58 -0.17 -0.98 16 8 C 0.10 0.91 6.69 -2.53 -0.02 0.89 16 9 N -0.62 -8.23 3.33 -170.52 -0.57 -8.79 16 10 C 0.55 10.20 7.87 -10.99 -0.09 10.11 16 11 O -0.52 -11.68 16.19 5.56 0.09 -11.59 16 12 C -0.15 -2.91 5.16 36.00 0.19 -2.73 16 13 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 14 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 15 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 16 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 17 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 18 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 22 C 0.08 0.84 6.60 -3.06 -0.02 0.82 16 23 C 0.17 1.42 6.62 -155.43 -1.03 0.39 16 24 N -0.28 -3.24 12.36 32.70 0.40 -2.83 16 25 N -0.08 -0.98 13.43 60.35 0.81 -0.17 16 26 N -0.09 -1.01 13.29 60.35 0.80 -0.21 16 27 N -0.31 -2.28 3.75 -65.03 -0.24 -2.53 16 28 C 0.07 0.17 11.04 59.85 0.66 0.83 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.26 7.51 -51.92 -0.39 -0.13 16 32 H 0.35 2.93 7.67 -39.30 -0.30 2.62 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.79 7.48 -51.93 -0.39 0.40 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 38 H 0.09 1.67 7.85 -51.92 -0.41 1.26 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.71 7.50 -51.93 -0.39 0.32 16 42 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 44 H 0.11 -0.03 7.42 -51.93 -0.39 -0.41 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -37.92 383.07 -6.71 -44.63 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -6.35 Total: -3.54 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -0.31 Total: -2.69 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 1.33 Total: -44.85 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.92 -6.71 -44.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480105083.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.058 kcal (2) G-P(sol) polarization free energy of solvation -37.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds