Wall clock time and date at job start Sat Apr 11 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47329 * 2 1 4 4 N 1.46898 * 109.47646 * 120.00352 * 2 1 3 5 5 C 1.46901 * 110.99834 * 274.99796 * 4 2 1 6 6 H 1.09009 * 110.64208 * 31.86014 * 5 4 2 7 7 C 1.55159 * 110.71973 * 154.99392 * 5 4 2 8 8 C 1.54910 * 101.58155 * 153.86660 * 7 5 4 9 9 N 1.47426 * 104.83073 * 322.99503 * 8 7 5 10 10 C 1.34784 * 125.64612 * 204.09218 * 9 8 7 11 11 O 1.21283 * 119.99667 * 180.02562 * 10 9 8 12 12 C 1.50693 * 119.99987 * 0.02562 * 10 9 8 13 13 S 1.81005 * 109.47250 * 180.02562 * 12 10 9 14 14 C 1.76191 * 100.00092 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00297 * 359.97438 * 14 13 12 16 16 C 1.38799 * 120.00144 * 180.02562 * 14 13 12 17 17 N 1.31636 * 119.99514 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00351 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47061 * 60.00426 * 18 16 14 20 20 H 1.48504 * 109.47072 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47093 * 300.00034 * 18 16 14 22 22 C 1.47019 * 108.70490 * 24.35510 * 9 8 7 23 23 C 1.50701 * 109.47086 * 240.00448 * 2 1 3 24 24 N 1.31077 * 126.65824 * 285.02316 * 23 2 1 25 25 N 1.28838 * 107.98814 * 179.97438 * 24 23 2 26 26 N 1.28735 * 109.40141 * 359.97438 * 25 24 23 27 27 N 1.29022 * 108.80616 * 359.74844 * 26 25 24 28 28 C 1.46502 * 126.43415 * 180.24501 * 27 26 25 29 29 H 1.09003 * 109.47614 * 59.99460 * 1 2 3 30 30 H 1.08998 * 109.47329 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47106 * 299.99741 * 1 2 3 32 32 H 1.00892 * 111.00166 * 151.04477 * 4 2 1 33 33 H 1.08997 * 111.00081 * 35.79380 * 7 5 4 34 34 H 1.08998 * 111.00759 * 271.94244 * 7 5 4 35 35 H 1.09002 * 110.36832 * 204.15743 * 8 7 5 36 36 H 1.08996 * 110.36615 * 81.83198 * 8 7 5 37 37 H 1.09002 * 109.47106 * 299.99491 * 12 10 9 38 38 H 1.09003 * 109.47551 * 59.99749 * 12 10 9 39 39 H 0.97000 * 119.99618 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.88426 * 118.13460 * 22 9 8 41 41 H 1.09007 * 109.88165 * 239.29472 * 22 9 8 42 42 H 1.08991 * 109.47455 * 270.17249 * 28 27 26 43 43 H 1.08994 * 109.47195 * 30.18291 * 28 27 26 44 44 H 1.09002 * 109.46611 * 150.17339 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0826 0.2225 2.3468 6 1 1.2981 0.9765 2.2805 7 6 1.9780 -0.5623 3.6812 8 6 2.7193 0.3845 4.6578 9 7 3.8293 0.9478 3.8677 10 6 4.9792 1.4408 4.3690 11 8 5.8268 1.8813 3.6217 12 6 5.2117 1.4446 5.8579 13 16 6.8336 2.1651 6.2135 14 6 6.8417 2.0480 7.9715 15 1 5.9937 1.6235 8.4884 16 6 7.9373 2.5023 8.6923 17 7 8.9703 3.0211 8.0624 18 14 7.9456 2.3789 10.5562 19 1 7.8169 0.9553 10.9586 20 1 9.2208 2.9282 11.0830 21 1 6.8062 3.1545 11.1087 22 6 3.4715 0.8885 2.4430 23 6 2.0322 -0.7103 -1.2305 24 7 2.0361 -2.0042 -1.4405 25 7 2.5433 -2.2166 -2.6057 26 7 2.8625 -1.0920 -3.1446 27 7 2.5577 -0.1390 -2.3301 28 6 2.7512 1.2953 -2.5575 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 2.9173 -1.1205 1.0286 33 1 2.4852 -1.5244 3.6093 34 1 0.9372 -0.6923 3.9775 35 1 3.1058 -0.1756 5.5093 36 1 2.0531 1.1783 4.9956 37 1 4.4369 2.0366 6.3451 38 1 5.1777 0.4219 6.2336 39 1 9.7362 3.3383 8.5661 40 1 3.4313 1.8958 2.0286 41 1 4.2051 0.2915 1.9010 42 1 3.7363 1.5908 -2.1968 43 1 2.6760 1.5074 -3.6240 44 1 1.9849 1.8548 -2.0210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480105083.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:43 Heat of formation + Delta-G solvation = 65.633644 kcal Electronic energy + Delta-G solvation = -26646.612070 eV Core-core repulsion = 22762.168084 eV Total energy + Delta-G solvation = -3884.443986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.29663 -41.14052 -39.20580 -37.27923 -36.61179 -34.59416 -33.90372 -32.20847 -30.86764 -30.58187 -29.31809 -28.19613 -27.59628 -25.67433 -24.53759 -23.99149 -22.07898 -21.72243 -20.73360 -19.60810 -18.56724 -18.34218 -18.07801 -17.89382 -17.10450 -16.88780 -16.49542 -16.30067 -15.69876 -15.45915 -15.14738 -14.71943 -14.64083 -14.52047 -14.44095 -14.13845 -13.77088 -13.61601 -13.50424 -13.27782 -13.20719 -13.16755 -13.00836 -12.86643 -12.73459 -12.64226 -12.47381 -12.37362 -12.07173 -11.90072 -11.80163 -11.66875 -11.16571 -11.13417 -11.02112 -10.30045 -9.80592 -9.56729 -8.69439 -8.35410 -6.14335 0.10958 1.01781 1.08529 1.23153 1.43968 1.44677 1.53564 1.54748 2.05658 2.26864 2.74419 2.80709 2.98795 3.21546 3.33027 3.49701 3.64565 3.76517 3.90880 4.01528 4.12693 4.17599 4.21678 4.22912 4.26979 4.32856 4.38853 4.44473 4.51144 4.61214 4.64291 4.72816 4.82847 4.86634 4.93393 5.11696 5.12630 5.25685 5.34718 5.37005 5.40771 5.86934 6.04330 6.18777 6.34892 7.05674 7.08712 7.47677 8.73597 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023694 B = 0.002001 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.435083 B =13990.528836 C =14601.263820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.172 3.828 3 H 0.103 0.897 4 N -0.659 5.659 5 C 0.092 3.908 6 H 0.132 0.868 7 C -0.108 4.108 8 C 0.088 3.912 9 N -0.614 5.614 10 C 0.544 3.456 11 O -0.570 6.570 12 C -0.119 4.119 13 S -0.154 6.154 14 C -0.545 4.545 15 H 0.084 0.916 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 0.999 3.001 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.260 1.260 22 C 0.077 3.923 23 C 0.179 3.821 24 N -0.310 5.310 25 N -0.115 5.115 26 N -0.110 5.110 27 N -0.296 5.296 28 C 0.058 3.942 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.344 0.656 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.271 0.729 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.110 0.890 43 H 0.123 0.877 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.121 -2.249 -15.989 29.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.120 0.880 4 N -0.291 5.291 5 C -0.019 4.019 6 H 0.150 0.850 7 C -0.146 4.146 8 C -0.034 4.034 9 N -0.349 5.349 10 C 0.332 3.668 11 O -0.449 6.449 12 C -0.270 4.270 13 S 0.073 5.927 14 C -0.693 4.693 15 H 0.102 0.898 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.820 3.180 19 H -0.187 1.187 20 H -0.205 1.205 21 H -0.184 1.184 22 C -0.048 4.048 23 C -0.100 4.100 24 N -0.160 5.160 25 N -0.108 5.108 26 N -0.096 5.096 27 N -0.099 5.099 28 C -0.081 4.081 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.164 0.836 33 H 0.090 0.910 34 H 0.138 0.862 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.129 0.871 43 H 0.142 0.858 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.001 -2.914 -17.710 29.175 hybrid contribution 0.696 0.725 1.653 1.935 sum -22.304 -2.189 -16.057 27.570 Atomic orbital electron populations 1.21859 0.90053 1.03482 1.03957 1.20326 0.98052 0.94948 0.80745 0.87991 1.60739 1.34172 1.31122 1.03068 1.22813 0.93987 0.94086 0.90995 0.85043 1.22770 1.02663 0.97451 0.91760 1.22764 0.87468 0.97658 0.95510 1.48344 1.16711 1.61200 1.08651 1.19811 0.80629 0.76701 0.89615 1.90683 1.44992 1.47980 1.61221 1.23295 1.02976 1.05735 0.95005 1.85585 1.18184 1.80521 1.08403 1.23151 1.07051 1.47844 0.91250 0.89804 1.26151 0.93944 0.93746 1.05371 1.70183 1.06910 1.39263 1.38462 0.84996 0.78020 0.79228 0.75717 1.18683 1.20482 1.18431 1.22919 0.98105 1.01700 0.82071 1.26573 0.99443 0.90001 0.93979 1.74974 1.17843 1.13559 1.09621 1.78653 1.13066 1.16573 1.02549 1.78820 1.19055 0.92751 1.18987 1.48826 1.38467 1.11637 1.10933 1.23036 1.07139 0.69816 1.08147 0.90971 0.92448 0.88534 0.83588 0.90980 0.86250 0.90121 0.88717 0.87240 0.87711 0.91991 0.91134 0.93512 0.87132 0.85816 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.73 9.38 71.98 0.68 -0.06 16 2 C 0.17 1.35 2.77 44.17 0.12 1.48 16 3 H 0.10 0.23 6.92 -2.39 -0.02 0.21 16 4 N -0.66 -7.29 6.19 -467.23 -2.89 -10.18 16 5 C 0.09 0.86 3.01 46.11 0.14 1.00 16 6 H 0.13 0.51 7.23 -2.38 -0.02 0.49 16 7 C -0.11 -1.10 6.77 31.99 0.22 -0.88 16 8 C 0.09 1.34 6.69 86.86 0.58 1.92 16 9 N -0.61 -15.08 3.33 -811.78 -2.70 -17.78 16 10 C 0.54 20.14 7.87 87.65 0.69 20.83 16 11 O -0.57 -26.51 16.19 -3.04 -0.05 -26.55 16 12 C -0.12 -4.69 5.16 71.23 0.37 -4.32 16 13 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 14 C -0.55 -30.84 9.50 67.95 0.65 -30.19 16 15 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 16 C 0.01 0.71 5.49 84.86 0.47 1.18 16 17 N -0.91 -55.80 13.22 21.65 0.29 -55.51 16 18 Si 1.00 43.05 29.55 68.60 2.03 45.07 16 19 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 22 C 0.08 1.40 6.60 86.73 0.57 1.97 16 23 C 0.18 2.71 6.62 138.13 0.91 3.63 16 24 N -0.31 -7.30 12.36 -50.45 -0.62 -7.92 16 25 N -0.11 -3.06 13.43 37.01 0.50 -2.56 16 26 N -0.11 -2.40 13.29 37.02 0.49 -1.91 16 27 N -0.30 -4.05 3.75 -359.65 -1.35 -5.40 16 28 C 0.06 0.12 11.04 127.77 1.41 1.53 16 29 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 0.16 7.51 -2.38 -0.02 0.14 16 32 H 0.34 5.28 7.67 -89.70 -0.69 4.59 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 1.30 7.48 -2.39 -0.02 1.29 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 38 H 0.10 3.78 7.85 -2.39 -0.02 3.77 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 41 H 0.05 1.02 7.50 -2.38 -0.02 1.01 16 42 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.14 -0.65 7.42 -2.39 -0.02 -0.66 16 Total: -1.00 -88.63 383.07 1.67 -86.96 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.34 Total: 7.42 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 6.80 Total: -1.93 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -6.29 Total: -101.27 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.05 Total: -26.55 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -88.63 1.67 -86.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480105083.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.594 kcal (2) G-P(sol) polarization free energy of solvation -88.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds