Wall clock time and date at job start Sat Apr 11 2020 06:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.70310 * 2 1 4 4 C 1.53193 * 109.58627 * 239.64362 * 2 1 3 5 5 H 1.08996 * 109.49996 * 65.62900 * 4 2 1 6 6 N 1.46501 * 109.49800 * 305.52646 * 4 2 1 7 7 C 1.34785 * 119.99959 * 155.16144 * 6 4 2 8 8 O 1.21280 * 119.99554 * 0.02562 * 7 6 4 9 9 C 1.50693 * 119.99930 * 180.02562 * 7 6 4 10 10 C 1.53005 * 109.47061 * 180.02562 * 9 7 6 11 11 N 1.46496 * 109.47025 * 179.97438 * 10 9 7 12 12 C 1.35050 * 126.03788 * 124.71325 * 11 10 9 13 13 C 1.35378 * 107.72436 * 179.83274 * 12 11 10 14 14 Cl 1.73600 * 126.04014 * 180.15984 * 13 12 11 15 15 C 1.39927 * 107.90947 * 0.42659 * 13 12 11 16 16 N 1.30849 * 108.21368 * 359.73183 * 15 13 12 17 17 C 1.53050 * 109.31347 * 185.57884 * 4 2 1 18 18 C 1.53044 * 109.53617 * 61.36475 * 17 4 2 19 19 C 1.53193 * 109.31134 * 298.63688 * 18 17 4 20 20 N 1.46925 * 109.58663 * 120.35636 * 2 1 3 21 21 C 1.36938 * 120.63011 * 353.41558 * 20 2 1 22 22 H 1.07999 * 119.99829 * 28.99556 * 21 20 2 23 23 C 1.38807 * 120.00127 * 208.99513 * 21 20 2 24 24 N 1.31622 * 120.00399 * 15.02794 * 23 21 20 25 25 Si 1.86806 * 120.00130 * 195.03136 * 23 21 20 26 26 H 1.48499 * 109.46840 * 89.99880 * 25 23 21 27 27 H 1.48497 * 109.47073 * 209.99701 * 25 23 21 28 28 H 1.48497 * 109.47061 * 330.00263 * 25 23 21 29 29 H 1.08999 * 109.47319 * 180.35203 * 1 2 3 30 30 H 1.08993 * 109.46992 * 300.35791 * 1 2 3 31 31 H 1.09000 * 109.46988 * 60.35791 * 1 2 3 32 32 H 0.96996 * 120.00113 * 335.16656 * 6 4 2 33 33 H 1.09004 * 109.46696 * 299.99142 * 9 7 6 34 34 H 1.08989 * 109.47762 * 59.99696 * 9 7 6 35 35 H 1.09011 * 109.46733 * 299.99464 * 10 9 7 36 36 H 1.08996 * 109.47773 * 59.99149 * 10 9 7 37 37 H 1.07997 * 126.13456 * 359.97392 * 12 11 10 38 38 H 1.07994 * 125.89079 * 179.76239 * 15 13 12 39 39 H 1.09001 * 109.45753 * 301.34666 * 17 4 2 40 40 H 1.08994 * 109.45840 * 181.38208 * 17 4 2 41 41 H 1.08996 * 109.49545 * 178.68133 * 18 17 4 42 42 H 1.09004 * 109.49756 * 58.58587 * 18 17 4 43 43 H 1.08996 * 109.58342 * 174.42291 * 19 18 17 44 44 H 1.08997 * 109.58436 * 294.84598 * 19 18 17 45 45 H 0.96996 * 120.00742 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 1 1.7661 -0.1669 -2.1368 6 7 1.4514 -2.0680 -1.3071 7 6 1.3314 -2.6979 -2.4926 8 8 1.7140 -2.1566 -3.5083 9 6 0.7218 -4.0745 -2.5561 10 6 0.7046 -4.5583 -4.0076 11 7 0.1126 -5.8968 -4.0692 12 6 -0.9397 -6.2659 -4.8310 13 6 -1.1720 -7.5801 -4.6041 14 17 -2.4161 -8.5398 -5.3424 15 6 -0.2359 -8.0267 -3.6649 16 7 0.5342 -7.0187 -3.3439 17 6 3.5676 -0.8480 -1.1701 18 6 3.9569 -1.6658 0.0635 19 6 3.4650 -0.9470 1.3237 20 7 2.0225 -0.6996 1.1945 21 6 1.1536 -1.1135 2.1685 22 1 0.1359 -1.3679 1.9117 23 6 1.5808 -1.2061 3.4860 24 7 2.7039 -0.6279 3.8559 25 14 0.5618 -2.1514 4.7341 26 1 0.9963 -3.5712 4.7541 27 1 0.7524 -1.5563 6.0812 28 1 -0.8731 -2.0781 4.3590 29 1 -0.3634 -1.0276 0.0063 30 1 -0.3633 0.5194 0.8867 31 1 -0.3633 0.5083 -0.8932 32 1 1.1457 -2.5010 -0.4947 33 1 1.3134 -4.7620 -1.9515 34 1 -0.2978 -4.0385 -2.1727 35 1 0.1133 -3.8708 -4.6127 36 1 1.7244 -4.5944 -4.3907 37 1 -1.4947 -5.6276 -5.5025 38 1 -0.1615 -9.0302 -3.2729 39 1 4.0062 0.1473 -1.0993 40 1 3.9378 -1.3449 -2.0668 41 1 5.0412 -1.7697 0.1037 42 1 3.4983 -2.6529 0.0053 43 1 3.6517 -1.5718 2.1971 44 1 3.9903 0.0019 1.4317 45 1 3.0022 -0.6923 4.7766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486186077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:58 Heat of formation + Delta-G solvation = 51.745777 kcal Electronic energy + Delta-G solvation = -27625.539203 eV Core-core repulsion = 23706.156536 eV Total energy + Delta-G solvation = -3919.382667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.55233 -39.89084 -37.80793 -36.68631 -34.48307 -33.99330 -32.50011 -31.82136 -30.87659 -29.88065 -29.06799 -26.39705 -25.14823 -24.73860 -22.15525 -21.51155 -21.22913 -20.83995 -20.13152 -18.81222 -17.91336 -16.73359 -16.51241 -16.06491 -15.58809 -15.17227 -14.94126 -14.77417 -14.55189 -14.08941 -13.88303 -13.60515 -13.57771 -13.24754 -13.09818 -12.96412 -12.65665 -12.58117 -11.99145 -11.90419 -11.71474 -11.50407 -11.33319 -11.30338 -11.02438 -10.77508 -10.73310 -10.68817 -10.57847 -10.16634 -10.07111 -9.89948 -9.74746 -9.65692 -9.37599 -8.71130 -8.64277 -8.52413 -6.75047 -5.87071 -3.33042 1.43791 1.66459 2.30639 2.49759 2.78484 3.30761 3.37782 3.39409 3.47746 4.26116 4.39573 4.41857 4.55734 4.68845 4.95118 5.09527 5.18400 5.24379 5.27410 5.28314 5.47287 5.52211 5.55292 5.61333 5.68094 5.89509 6.04586 6.06680 6.14726 6.24744 6.33572 6.46427 6.51359 6.59811 6.61524 6.71451 6.87217 6.88428 7.00733 7.24701 7.32648 7.61387 7.71590 7.86531 8.35547 8.45115 9.11789 9.74662 10.31255 11.20651 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012932 B = 0.002614 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.720931 B =10710.333688 C =11936.806171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.040 0.960 4 C 0.134 3.866 5 H 0.076 0.924 6 N -0.696 5.696 7 C 0.515 3.485 8 O -0.559 6.559 9 C -0.156 4.156 10 C 0.153 3.847 11 N -0.361 5.361 12 C 0.076 3.924 13 C -0.192 4.192 14 Cl -0.047 7.047 15 C 0.062 3.938 16 N -0.277 5.277 17 C -0.121 4.121 18 C -0.140 4.140 19 C 0.170 3.830 20 N -0.586 5.586 21 C -0.258 4.258 22 H 0.071 0.929 23 C 0.006 3.994 24 N -0.900 5.900 25 Si 0.900 3.100 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.279 1.279 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.410 0.590 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.183 0.817 38 H 0.191 0.809 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.018 0.982 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.945 -9.608 -15.986 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.051 3.949 3 H 0.057 0.943 4 C 0.027 3.973 5 H 0.094 0.906 6 N -0.346 5.346 7 C 0.300 3.700 8 O -0.439 6.439 9 C -0.196 4.196 10 C 0.032 3.968 11 N -0.142 5.142 12 C -0.073 4.073 13 C -0.231 4.231 14 Cl -0.019 7.019 15 C -0.124 4.124 16 N -0.098 5.098 17 C -0.159 4.159 18 C -0.180 4.180 19 C 0.045 3.955 20 N -0.310 5.310 21 C -0.387 4.387 22 H 0.088 0.912 23 C -0.193 4.193 24 N -0.543 5.543 25 Si 0.730 3.270 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.247 0.753 33 H 0.126 0.874 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.200 0.800 38 H 0.208 0.792 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.036 0.964 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.650 -8.714 -15.835 18.663 hybrid contribution -1.361 -1.021 0.641 1.818 sum -6.010 -9.735 -15.194 19.020 Atomic orbital electron populations 1.21778 0.95633 1.01398 1.00462 1.20725 0.93337 0.93964 0.86848 0.94271 1.21568 0.92976 0.82869 0.99837 0.90570 1.46002 1.60924 1.18640 1.09024 1.20163 0.79018 0.86765 0.84038 1.90677 1.51074 1.67766 1.34423 1.21880 1.04093 0.95985 0.97674 1.21556 1.00931 0.76638 0.97682 1.48663 1.24010 1.09483 1.32076 1.22305 0.91819 0.95451 0.97695 1.20777 1.01233 0.92801 1.08282 1.98325 1.51300 1.70538 1.81714 1.23900 0.92904 0.99391 0.96254 1.77529 1.22609 0.92327 1.17364 1.21770 0.95402 1.00510 0.98251 1.22146 0.98986 0.99527 0.97305 1.20823 0.83086 0.97219 0.94394 1.44168 1.03138 1.64832 1.18837 1.19152 0.94823 1.38385 0.86342 0.91168 1.25098 0.97715 0.99470 0.97003 1.70011 1.23246 1.44127 1.16960 0.86329 0.79820 0.79784 0.81017 1.21418 1.21793 1.20453 0.92846 0.91755 0.94222 0.75313 0.87383 0.88382 0.87385 0.88321 0.79956 0.79245 0.91904 0.93142 0.93438 0.92880 0.89385 0.96413 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 7.72 37.16 0.29 -2.03 16 2 C 0.16 2.98 3.20 -67.60 -0.22 2.76 16 3 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.13 2.22 2.32 -67.80 -0.16 2.07 16 5 H 0.08 1.27 7.58 -51.93 -0.39 0.88 16 6 N -0.70 -10.56 3.47 -53.69 -0.19 -10.74 16 7 C 0.52 7.21 7.79 -10.99 -0.09 7.12 16 8 O -0.56 -9.20 15.65 5.56 0.09 -9.11 16 9 C -0.16 -1.69 5.88 -27.88 -0.16 -1.86 16 10 C 0.15 1.48 5.80 -4.04 -0.02 1.46 16 11 N -0.36 -3.71 3.68 -61.32 -0.23 -3.94 16 12 C 0.08 0.67 11.43 -17.16 -0.20 0.47 16 13 C -0.19 -1.82 6.65 -39.97 -0.27 -2.08 16 14 Cl -0.05 -0.40 29.30 -51.86 -1.52 -1.92 16 15 C 0.06 0.62 12.02 -17.34 -0.21 0.41 16 16 N -0.28 -3.27 12.42 30.64 0.38 -2.89 16 17 C -0.12 -2.04 5.58 -26.68 -0.15 -2.19 16 18 C -0.14 -2.57 5.93 -26.61 -0.16 -2.72 16 19 C 0.17 3.78 5.29 -3.71 -0.02 3.76 16 20 N -0.59 -12.98 2.65 -164.78 -0.44 -13.42 16 21 C -0.26 -6.28 8.61 -15.06 -0.13 -6.41 16 22 H 0.07 1.66 6.20 -52.49 -0.33 1.33 16 23 C 0.01 0.17 4.96 -17.43 -0.09 0.08 16 24 N -0.90 -24.71 11.14 55.49 0.62 -24.09 16 25 Si 0.90 20.51 29.58 -169.99 -5.03 15.49 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.05 0.89 6.37 -51.93 -0.33 0.56 16 30 H 0.06 1.20 7.66 -51.93 -0.40 0.80 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.41 6.48 7.77 -40.82 -0.32 6.16 16 33 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.10 0.98 8.14 -51.94 -0.42 0.56 16 35 H 0.11 0.89 8.03 -51.92 -0.42 0.47 16 36 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.18 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.19 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.98 7.53 -51.93 -0.39 0.59 16 43 H 0.09 2.22 6.06 -51.93 -0.31 1.90 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -28.97 377.24 -8.87 -37.84 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.67 Total: 6.27 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -1.57 Total: 0.84 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.15 Total: -55.09 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.49 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.52 Total: -1.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.97 -8.87 -37.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486186077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.587 kcal (2) G-P(sol) polarization free energy of solvation -28.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds