Wall clock time and date at job start Sat Apr 11 2020 06:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 109.58638 * 2 1 4 4 C 1.53193 * 109.58667 * 120.28769 * 2 1 3 5 5 H 1.08996 * 109.49605 * 54.61277 * 4 2 1 6 6 N 1.46499 * 109.49499 * 294.54494 * 4 2 1 7 7 C 1.34778 * 119.99742 * 155.00638 * 6 4 2 8 8 O 1.21284 * 119.99812 * 359.97438 * 7 6 4 9 9 C 1.50694 * 119.99848 * 180.02562 * 7 6 4 10 10 C 1.53009 * 109.46938 * 179.97438 * 9 7 6 11 11 N 1.46499 * 109.46832 * 179.97438 * 10 9 7 12 12 C 1.35050 * 126.03492 * 124.71597 * 11 10 9 13 13 C 1.35377 * 107.72827 * 179.83818 * 12 11 10 14 14 Cl 1.73599 * 126.04783 * 180.17949 * 13 12 11 15 15 C 1.39936 * 107.90468 * 0.41914 * 13 12 11 16 16 N 1.30849 * 108.21324 * 359.74088 * 15 13 12 17 17 C 1.53041 * 109.31115 * 174.56443 * 4 2 1 18 18 C 1.53043 * 109.53724 * 298.63274 * 17 4 2 19 19 C 1.53193 * 109.31457 * 61.36465 * 18 17 4 20 20 N 1.46930 * 108.77551 * 305.36626 * 19 18 17 21 21 C 1.36931 * 120.62832 * 233.58459 * 20 19 18 22 22 H 1.08002 * 119.99911 * 150.21430 * 21 20 19 23 23 C 1.38813 * 120.00441 * 330.21066 * 21 20 19 24 24 N 1.31615 * 119.99584 * 344.45947 * 23 21 20 25 25 Si 1.86797 * 120.00188 * 164.46465 * 23 21 20 26 26 H 1.48496 * 109.46928 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47242 * 119.99777 * 25 23 21 28 28 H 1.48505 * 109.46683 * 240.00012 * 25 23 21 29 29 H 1.09002 * 109.46801 * 299.99835 * 1 2 3 30 30 H 1.08997 * 109.47147 * 59.99538 * 1 2 3 31 31 H 1.09001 * 109.47005 * 180.02562 * 1 2 3 32 32 H 0.96992 * 119.99864 * 334.99946 * 6 4 2 33 33 H 1.09000 * 109.46966 * 299.99303 * 9 7 6 34 34 H 1.08998 * 109.47709 * 60.00079 * 9 7 6 35 35 H 1.09000 * 109.46951 * 299.99591 * 10 9 7 36 36 H 1.08994 * 109.47292 * 59.99417 * 10 9 7 37 37 H 1.08001 * 126.13413 * 359.97271 * 12 11 10 38 38 H 1.07998 * 125.89352 * 179.75380 * 15 13 12 39 39 H 1.08999 * 109.46165 * 58.65125 * 17 4 2 40 40 H 1.08996 * 109.45995 * 178.63154 * 17 4 2 41 41 H 1.08999 * 109.49731 * 181.31962 * 18 17 4 42 42 H 1.09007 * 109.49986 * 301.41437 * 18 17 4 43 43 H 1.09005 * 109.58280 * 65.15012 * 19 18 17 44 44 H 1.08997 * 109.58915 * 185.57636 * 19 18 17 45 45 H 0.97000 * 119.99726 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0268 0.0000 4 6 2.0436 -0.7279 1.2463 5 1 1.6050 -1.7247 1.2920 6 7 1.6670 0.0275 2.4436 7 6 1.5437 -0.6041 3.6278 8 8 1.7440 -1.7980 3.7020 9 6 1.1557 0.1728 4.8594 10 6 1.0857 -0.7744 6.0589 11 7 0.7092 -0.0190 7.2563 12 6 -0.3354 -0.2873 8.0692 13 6 -0.3364 0.6373 9.0580 14 17 -1.4740 0.7331 10.3658 15 6 0.7386 1.5054 8.8364 16 7 1.3655 1.1128 7.7570 17 6 3.5679 -0.8434 1.1728 18 6 3.9604 -1.6609 -0.0601 19 6 3.4685 -0.9436 -1.3212 20 7 2.0253 -0.6991 -1.1937 21 6 1.1585 -1.1143 -2.1690 22 1 0.1446 -1.3828 -1.9117 23 6 1.5830 -1.1903 -3.4885 24 7 2.6930 -0.5874 -3.8584 25 14 0.5789 -2.1480 -4.7390 26 1 -0.6157 -2.7282 -4.0747 27 1 0.1462 -1.2368 -5.8288 28 1 1.4084 -3.2408 -5.3075 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.5066 0.9822 2.3842 33 1 1.8994 0.9466 5.0500 34 1 0.1810 0.6356 4.7051 35 1 0.3419 -1.5480 5.8681 36 1 2.0602 -1.2377 6.2135 37 1 -1.0417 -1.0959 7.9526 38 1 1.0049 2.3530 9.4503 39 1 4.0046 0.1527 1.1021 40 1 3.9381 -1.3395 2.0700 41 1 5.0449 -1.7626 -0.0990 42 1 3.5037 -2.6489 -0.0020 43 1 3.9920 0.0064 -1.4289 44 1 3.6575 -1.5683 -2.1941 45 1 2.9898 -0.6408 -4.7803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486186078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:01 Heat of formation + Delta-G solvation = 50.283034 kcal Electronic energy + Delta-G solvation = -26985.737589 eV Core-core repulsion = 23066.291493 eV Total energy + Delta-G solvation = -3919.446096 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.65298 -39.92689 -37.81095 -36.76639 -34.65592 -34.32434 -32.64614 -31.77948 -30.99700 -29.93603 -28.98133 -26.37445 -25.19160 -24.72072 -22.23068 -21.60532 -21.16338 -20.75637 -20.20683 -19.36596 -18.00175 -16.78413 -16.48015 -16.17735 -15.84361 -15.30783 -14.90460 -14.86964 -14.64618 -13.97066 -13.84500 -13.70468 -13.65736 -13.47401 -13.28977 -12.85561 -12.73019 -12.60114 -12.08776 -11.83573 -11.75600 -11.61022 -11.59460 -11.17409 -10.97456 -10.83100 -10.80380 -10.61313 -10.36225 -10.20655 -10.07066 -10.04267 -9.94120 -9.68835 -9.42029 -8.80711 -8.77077 -8.50667 -6.71913 -5.84293 -3.29196 1.33792 1.56871 2.20506 2.40050 2.62770 3.25155 3.33596 3.42215 3.43875 4.13151 4.32538 4.41593 4.44988 4.57078 4.77991 4.96450 5.05198 5.18451 5.24167 5.33482 5.35916 5.44993 5.46253 5.54784 5.72968 5.90502 5.96207 6.02077 6.15102 6.26310 6.33642 6.40952 6.46459 6.55948 6.64704 6.69552 6.78569 6.92545 7.00026 7.13985 7.34637 7.59798 7.62262 7.77490 8.25326 8.40267 9.15213 9.77740 10.34263 11.24393 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026887 B = 0.001902 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.156518 B =14719.843478 C =15244.710377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.167 3.833 3 H 0.027 0.973 4 C 0.130 3.870 5 H 0.087 0.913 6 N -0.714 5.714 7 C 0.517 3.483 8 O -0.546 6.546 9 C -0.155 4.155 10 C 0.151 3.849 11 N -0.361 5.361 12 C 0.077 3.923 13 C -0.192 4.192 14 Cl -0.045 7.045 15 C 0.063 3.937 16 N -0.280 5.280 17 C -0.117 4.117 18 C -0.140 4.140 19 C 0.170 3.830 20 N -0.582 5.582 21 C -0.253 4.253 22 H 0.070 0.930 23 C 0.004 3.996 24 N -0.901 5.901 25 Si 0.902 3.098 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.289 1.289 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.398 0.602 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.184 0.816 38 H 0.191 0.809 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.019 0.981 44 H 0.087 0.913 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 3.681 23.473 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.045 0.955 4 C 0.024 3.976 5 H 0.105 0.895 6 N -0.364 5.364 7 C 0.301 3.699 8 O -0.424 6.424 9 C -0.196 4.196 10 C 0.030 3.970 11 N -0.143 5.143 12 C -0.071 4.071 13 C -0.231 4.231 14 Cl -0.017 7.017 15 C -0.124 4.124 16 N -0.101 5.101 17 C -0.155 4.155 18 C -0.180 4.180 19 C 0.044 3.956 20 N -0.305 5.305 21 C -0.382 4.382 22 H 0.088 0.912 23 C -0.195 4.195 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.202 1.202 27 H -0.217 1.217 28 H -0.215 1.215 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.231 0.769 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.201 0.799 38 H 0.208 0.792 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.105 0.895 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.403 2.965 22.486 22.934 hybrid contribution -1.262 -0.069 -0.049 1.265 sum -4.665 2.896 22.437 23.099 Atomic orbital electron populations 1.21814 0.95657 1.01655 1.00241 1.20563 0.93228 0.93589 0.86707 0.95505 1.21831 0.95148 0.96865 0.83709 0.89522 1.46135 1.69453 1.12371 1.08438 1.20175 0.77354 0.87869 0.84452 1.90728 1.50905 1.15004 1.85754 1.21897 1.05170 0.99902 0.92596 1.21570 1.04256 0.91940 0.79224 1.48646 1.21314 1.22716 1.21622 1.22330 0.92977 1.00298 0.91537 1.20786 1.00690 1.03643 0.97980 1.98331 1.59030 1.98149 1.46227 1.23900 0.93145 0.99926 0.95416 1.77493 1.20107 1.00089 1.12409 1.21758 0.95301 1.00096 0.98370 1.22186 0.99265 0.99700 0.96859 1.20834 0.83095 0.97219 0.94441 1.44033 1.03116 1.65085 1.18247 1.19187 0.95260 1.37782 0.85994 0.91190 1.25100 0.97908 0.99445 0.97009 1.70034 1.24086 1.43605 1.16774 0.86238 0.79617 0.79595 0.81407 1.20215 1.21721 1.21536 0.94378 0.91713 0.92686 0.76851 0.87424 0.88317 0.87232 0.88218 0.79890 0.79222 0.92743 0.93207 0.92967 0.92506 0.96245 0.89451 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.84 37.16 0.29 -2.11 16 2 C 0.17 3.21 3.03 -67.59 -0.20 3.00 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.13 2.20 2.00 -67.81 -0.14 2.07 16 5 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 6 N -0.71 -9.26 4.57 -53.69 -0.25 -9.50 16 7 C 0.52 6.49 7.80 -10.99 -0.09 6.40 16 8 O -0.55 -8.84 15.64 5.55 0.09 -8.76 16 9 C -0.15 -1.35 5.88 -27.88 -0.16 -1.52 16 10 C 0.15 1.28 5.80 -4.04 -0.02 1.25 16 11 N -0.36 -3.24 3.68 -61.32 -0.23 -3.47 16 12 C 0.08 0.60 11.43 -17.16 -0.20 0.40 16 13 C -0.19 -1.60 6.65 -39.97 -0.27 -1.87 16 14 Cl -0.05 -0.35 29.30 -51.86 -1.52 -1.87 16 15 C 0.06 0.54 12.02 -17.33 -0.21 0.33 16 16 N -0.28 -2.85 12.42 30.64 0.38 -2.47 16 17 C -0.12 -2.00 5.46 -26.69 -0.15 -2.15 16 18 C -0.14 -2.68 6.08 -26.61 -0.16 -2.84 16 19 C 0.17 3.91 5.28 -3.71 -0.02 3.89 16 20 N -0.58 -13.75 2.99 -164.77 -0.49 -14.24 16 21 C -0.25 -6.57 8.58 -15.06 -0.13 -6.70 16 22 H 0.07 1.79 6.25 -52.49 -0.33 1.46 16 23 C 0.00 0.12 4.94 -17.43 -0.09 0.03 16 24 N -0.90 -25.36 11.23 55.49 0.62 -24.74 16 25 Si 0.90 21.18 29.58 -169.99 -5.03 16.15 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.04 0.54 7.79 -51.93 -0.40 0.13 16 30 H 0.06 1.23 7.66 -51.93 -0.40 0.84 16 31 H 0.05 1.02 7.43 -51.93 -0.39 0.64 16 32 H 0.40 4.18 8.60 -40.82 -0.35 3.83 16 33 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.11 0.81 8.03 -51.93 -0.42 0.39 16 36 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 37 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.19 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 2.27 6.14 -51.93 -0.32 1.95 16 45 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 380.66 15.07 5.74 5.74 Total: -1.00 -31.03 380.66 -9.00 -40.02 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.78 Total: 2.94 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.53 Total: 0.19 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.04 Total: -54.42 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.52 Total: -1.87 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.03 -9.00 -40.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486186078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.307 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds