Wall clock time and date at job start Sat Apr 11 2020 06:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 109.58638 * 2 1 4 4 C 1.53193 * 109.58667 * 120.28769 * 2 1 3 5 5 H 1.08996 * 109.49605 * 54.61277 * 4 2 1 6 6 N 1.46499 * 109.49499 * 294.54494 * 4 2 1 7 7 C 1.34778 * 119.99742 * 155.00638 * 6 4 2 8 8 O 1.21284 * 119.99812 * 359.97438 * 7 6 4 9 9 C 1.50694 * 119.99848 * 180.02562 * 7 6 4 10 10 C 1.53009 * 109.46938 * 179.97438 * 9 7 6 11 11 N 1.46499 * 109.46832 * 179.97438 * 10 9 7 12 12 C 1.35050 * 126.03492 * 124.71597 * 11 10 9 13 13 C 1.35377 * 107.72827 * 179.83818 * 12 11 10 14 14 Cl 1.73599 * 126.04783 * 180.17949 * 13 12 11 15 15 C 1.39936 * 107.90468 * 0.41914 * 13 12 11 16 16 N 1.30849 * 108.21324 * 359.74088 * 15 13 12 17 17 C 1.53041 * 109.31115 * 174.56443 * 4 2 1 18 18 C 1.53043 * 109.53724 * 298.63274 * 17 4 2 19 19 C 1.53193 * 109.31457 * 61.36465 * 18 17 4 20 20 N 1.46930 * 108.77551 * 305.36626 * 19 18 17 21 21 C 1.36931 * 120.62832 * 233.58459 * 20 19 18 22 22 H 1.08002 * 119.99911 * 150.21430 * 21 20 19 23 23 C 1.38813 * 120.00441 * 330.21066 * 21 20 19 24 24 N 1.31615 * 119.99584 * 344.45947 * 23 21 20 25 25 Si 1.86797 * 120.00188 * 164.46465 * 23 21 20 26 26 H 1.48496 * 109.46928 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47242 * 119.99777 * 25 23 21 28 28 H 1.48505 * 109.46683 * 240.00012 * 25 23 21 29 29 H 1.09002 * 109.46801 * 299.99835 * 1 2 3 30 30 H 1.08997 * 109.47147 * 59.99538 * 1 2 3 31 31 H 1.09001 * 109.47005 * 180.02562 * 1 2 3 32 32 H 0.96992 * 119.99864 * 334.99946 * 6 4 2 33 33 H 1.09000 * 109.46966 * 299.99303 * 9 7 6 34 34 H 1.08998 * 109.47709 * 60.00079 * 9 7 6 35 35 H 1.09000 * 109.46951 * 299.99591 * 10 9 7 36 36 H 1.08994 * 109.47292 * 59.99417 * 10 9 7 37 37 H 1.08001 * 126.13413 * 359.97271 * 12 11 10 38 38 H 1.07998 * 125.89352 * 179.75380 * 15 13 12 39 39 H 1.08999 * 109.46165 * 58.65125 * 17 4 2 40 40 H 1.08996 * 109.45995 * 178.63154 * 17 4 2 41 41 H 1.08999 * 109.49731 * 181.31962 * 18 17 4 42 42 H 1.09007 * 109.49986 * 301.41437 * 18 17 4 43 43 H 1.09005 * 109.58280 * 65.15012 * 19 18 17 44 44 H 1.08997 * 109.58915 * 185.57636 * 19 18 17 45 45 H 0.97000 * 119.99726 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0268 0.0000 4 6 2.0436 -0.7279 1.2463 5 1 1.6050 -1.7247 1.2920 6 7 1.6670 0.0275 2.4436 7 6 1.5437 -0.6041 3.6278 8 8 1.7440 -1.7980 3.7020 9 6 1.1557 0.1728 4.8594 10 6 1.0857 -0.7744 6.0589 11 7 0.7092 -0.0190 7.2563 12 6 -0.3354 -0.2873 8.0692 13 6 -0.3364 0.6373 9.0580 14 17 -1.4740 0.7331 10.3658 15 6 0.7386 1.5054 8.8364 16 7 1.3655 1.1128 7.7570 17 6 3.5679 -0.8434 1.1728 18 6 3.9604 -1.6609 -0.0601 19 6 3.4685 -0.9436 -1.3212 20 7 2.0253 -0.6991 -1.1937 21 6 1.1585 -1.1143 -2.1690 22 1 0.1446 -1.3828 -1.9117 23 6 1.5830 -1.1903 -3.4885 24 7 2.6930 -0.5874 -3.8584 25 14 0.5789 -2.1480 -4.7390 26 1 -0.6157 -2.7282 -4.0747 27 1 0.1462 -1.2368 -5.8288 28 1 1.4084 -3.2408 -5.3075 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.5066 0.9822 2.3842 33 1 1.8994 0.9466 5.0500 34 1 0.1810 0.6356 4.7051 35 1 0.3419 -1.5480 5.8681 36 1 2.0602 -1.2377 6.2135 37 1 -1.0417 -1.0959 7.9526 38 1 1.0049 2.3530 9.4503 39 1 4.0046 0.1527 1.1021 40 1 3.9381 -1.3395 2.0700 41 1 5.0449 -1.7626 -0.0990 42 1 3.5037 -2.6489 -0.0020 43 1 3.9920 0.0064 -1.4289 44 1 3.6575 -1.5683 -2.1941 45 1 2.9898 -0.6408 -4.7803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486186078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:01 Heat of formation + Delta-G solvation = 31.447170 kcal Electronic energy + Delta-G solvation = -26986.554373 eV Core-core repulsion = 23066.291493 eV Total energy + Delta-G solvation = -3920.262880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27164 -41.08917 -39.29319 -37.35815 -35.95063 -35.23617 -34.25823 -33.41534 -31.84059 -31.00799 -30.11698 -27.88981 -26.89353 -25.70508 -23.69771 -22.34254 -22.20917 -21.93489 -21.32866 -20.87753 -18.76618 -18.24413 -17.67362 -17.31935 -16.93436 -16.71484 -16.04377 -15.67419 -15.59327 -15.54044 -15.31263 -14.96485 -14.67491 -14.59171 -14.26344 -14.23493 -14.05768 -13.50101 -13.33290 -13.21458 -12.84005 -12.75187 -12.69305 -12.51161 -12.44043 -12.36665 -12.24455 -12.00367 -11.81722 -11.76926 -11.62579 -11.43785 -11.19050 -10.91261 -10.58102 -10.53987 -9.99983 -9.41880 -8.64925 -7.86165 -5.32381 0.73471 0.96009 1.45281 1.48506 1.57427 1.59963 1.62726 1.77481 2.21573 2.53911 3.29700 3.47661 3.59145 3.68252 3.84336 3.87912 3.94294 4.05010 4.09740 4.22190 4.33337 4.36843 4.41872 4.53471 4.61923 4.62588 4.72272 4.78104 4.81097 4.89109 4.92926 5.04447 5.13728 5.23214 5.29566 5.38187 5.46417 5.49553 5.60047 5.70824 5.76367 5.82133 6.41762 6.52015 6.57905 7.16004 7.25995 7.86602 8.38193 9.20875 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026887 B = 0.001902 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.156518 B =14719.843478 C =15244.710377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.163 3.837 3 H 0.031 0.969 4 C 0.148 3.852 5 H 0.061 0.939 6 N -0.707 5.707 7 C 0.520 3.480 8 O -0.581 6.581 9 C -0.138 4.138 10 C 0.152 3.848 11 N -0.366 5.366 12 C 0.080 3.920 13 C -0.205 4.205 14 Cl -0.043 7.043 15 C 0.062 3.938 16 N -0.310 5.310 17 C -0.109 4.109 18 C -0.130 4.130 19 C 0.176 3.824 20 N -0.600 5.600 21 C -0.251 4.251 22 H 0.073 0.927 23 C -0.050 4.050 24 N -0.934 5.934 25 Si 0.960 3.040 26 H -0.267 1.267 27 H -0.293 1.293 28 H -0.294 1.294 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.413 0.587 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.210 0.790 38 H 0.210 0.790 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.003 0.997 44 H 0.052 0.948 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.728 4.175 25.614 26.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.056 3.944 3 H 0.049 0.951 4 C 0.041 3.959 5 H 0.079 0.921 6 N -0.358 5.358 7 C 0.307 3.693 8 O -0.462 6.462 9 C -0.178 4.178 10 C 0.032 3.968 11 N -0.148 5.148 12 C -0.068 4.068 13 C -0.243 4.243 14 Cl -0.015 7.015 15 C -0.125 4.125 16 N -0.132 5.132 17 C -0.148 4.148 18 C -0.170 4.170 19 C 0.050 3.950 20 N -0.324 5.324 21 C -0.381 4.381 22 H 0.090 0.910 23 C -0.246 4.246 24 N -0.580 5.580 25 Si 0.789 3.211 26 H -0.191 1.191 27 H -0.220 1.220 28 H -0.221 1.221 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.250 0.750 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.107 0.893 37 H 0.226 0.774 38 H 0.227 0.773 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.021 0.979 44 H 0.071 0.929 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.620 3.488 24.673 25.343 hybrid contribution -0.908 -0.201 -0.610 1.112 sum -5.528 3.287 24.063 24.907 Atomic orbital electron populations 1.21726 0.94351 1.01091 1.01308 1.20741 0.94355 0.93443 0.85868 0.95097 1.21272 0.94669 0.95655 0.84303 0.92087 1.45926 1.69504 1.12941 1.07432 1.20744 0.76060 0.87503 0.84968 1.90723 1.52314 1.16873 1.86267 1.21774 1.06259 0.99357 0.90442 1.21539 1.04230 0.92003 0.79066 1.48646 1.21631 1.22676 1.21844 1.22796 0.92691 1.00502 0.90807 1.20923 1.00970 1.04027 0.98421 1.98332 1.58867 1.98161 1.46092 1.24300 0.92823 1.00282 0.95071 1.77455 1.21201 1.01086 1.13433 1.21685 0.95540 1.00218 0.97370 1.22019 1.00244 0.98817 0.95875 1.20623 0.83264 0.96060 0.95044 1.44273 1.03052 1.65891 1.19191 1.19462 0.95547 1.36523 0.86553 0.90974 1.25785 0.99133 1.00859 0.98802 1.70171 1.25740 1.45399 1.16666 0.85310 0.78508 0.78066 0.79201 1.19148 1.21986 1.22073 0.90442 0.93477 0.93995 0.75017 0.86714 0.86311 0.86048 0.89290 0.77351 0.77333 0.91765 0.92448 0.91095 0.93615 0.97904 0.92925 0.94267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 7.84 71.98 0.56 -3.74 16 2 C 0.16 6.09 3.03 44.98 0.14 6.23 16 3 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 4 C 0.15 4.81 2.00 45.07 0.09 4.90 16 5 H 0.06 2.35 7.58 -2.39 -0.02 2.34 16 6 N -0.71 -16.50 4.57 -442.17 -2.02 -18.53 16 7 C 0.52 11.80 7.80 87.65 0.68 12.48 16 8 O -0.58 -17.91 15.64 -3.04 -0.05 -17.96 16 9 C -0.14 -2.00 5.88 29.85 0.18 -1.83 16 10 C 0.15 2.23 5.80 86.38 0.50 2.73 16 11 N -0.37 -5.73 3.68 -347.92 -1.28 -7.01 16 12 C 0.08 1.05 11.43 83.54 0.95 2.00 16 13 C -0.20 -2.99 6.65 22.02 0.15 -2.84 16 14 Cl -0.04 -0.58 29.30 -2.72 -0.08 -0.66 16 15 C 0.06 0.94 12.02 85.25 1.02 1.96 16 16 N -0.31 -5.73 12.42 -56.97 -0.71 -6.44 16 17 C -0.11 -3.61 5.46 30.62 0.17 -3.44 16 18 C -0.13 -4.94 6.08 30.67 0.19 -4.75 16 19 C 0.18 8.29 5.28 86.36 0.46 8.74 16 20 N -0.60 -28.66 2.99 -675.20 -2.02 -30.67 16 21 C -0.25 -13.17 8.58 84.03 0.72 -12.45 16 22 H 0.07 3.69 6.25 -2.91 -0.02 3.68 16 23 C -0.05 -2.75 4.94 84.86 0.42 -2.33 16 24 N -0.93 -54.12 11.23 21.65 0.24 -53.88 16 25 Si 0.96 44.29 29.58 68.60 2.03 46.32 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 28 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 29 H 0.08 1.97 7.79 -2.39 -0.02 1.95 16 30 H 0.05 1.75 7.66 -2.39 -0.02 1.73 16 31 H 0.04 1.51 7.43 -2.39 -0.02 1.49 16 32 H 0.41 7.29 8.60 -92.71 -0.80 6.49 16 33 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.12 1.48 8.03 -2.39 -0.02 1.46 16 36 H 0.09 1.51 8.10 -2.39 -0.02 1.49 16 37 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 38 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 44 H 0.05 2.84 6.14 -2.39 -0.01 2.82 16 45 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -68.26 380.66 2.55 -65.71 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.21 Total: 15.45 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 6.23 Total: 7.67 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -5.78 Total: -116.53 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.05 Total: -17.96 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.66 kcal Total: -68.26 2.55 -65.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486186078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.152 kcal (2) G-P(sol) polarization free energy of solvation -68.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds