Wall clock time and date at job start Sat Apr 11 2020 06:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46439 * 2 1 4 4 C 1.53042 * 109.45765 * 240.02616 * 2 1 3 5 5 C 1.53191 * 109.30997 * 178.61310 * 4 2 1 6 6 N 1.46930 * 108.77266 * 54.63940 * 5 4 2 7 7 C 1.34779 * 120.62773 * 126.41052 * 6 5 4 8 8 O 1.21577 * 119.99879 * 175.32136 * 7 6 5 9 9 C 1.47663 * 120.00570 * 355.32174 * 7 6 5 10 10 N 1.31827 * 126.45501 * 5.37237 * 9 7 6 11 11 N 1.28478 * 110.13258 * 179.85799 * 10 9 7 12 12 C 1.46500 * 124.93233 * 180.14680 * 11 10 9 13 13 C 1.35639 * 110.12832 * 0.41722 * 11 10 9 14 14 C 1.35457 * 107.13295 * 359.74838 * 13 11 10 15 15 Cl 1.73607 * 127.23689 * 180.02562 * 14 13 11 16 16 C 1.46920 * 118.74221 * 306.38835 * 6 5 4 17 17 H 1.09005 * 109.58627 * 293.82808 * 16 6 5 18 18 C 1.52998 * 109.59281 * 173.53710 * 16 6 5 19 19 N 1.46500 * 109.46823 * 73.15472 * 18 16 6 20 20 C 1.36934 * 119.99926 * 175.29622 * 19 18 16 21 21 H 1.08002 * 120.00096 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00271 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99619 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00227 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46968 * 89.99832 * 24 22 20 26 26 H 1.48500 * 109.47144 * 209.99587 * 24 22 20 27 27 H 1.48500 * 109.47316 * 329.99870 * 24 22 20 28 28 C 1.53039 * 109.45603 * 119.97786 * 2 1 3 29 29 H 1.09004 * 109.47277 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47124 * 299.99832 * 1 2 3 31 31 H 1.09004 * 109.46966 * 59.99824 * 1 2 3 32 32 H 1.08996 * 109.50400 * 298.56969 * 4 2 1 33 33 H 1.09003 * 109.49714 * 58.67067 * 4 2 1 34 34 H 1.09000 * 109.58831 * 174.42385 * 5 4 2 35 35 H 1.09000 * 109.58945 * 294.85609 * 5 4 2 36 36 H 1.09000 * 109.47182 * 270.30583 * 12 11 10 37 37 H 1.08993 * 109.47458 * 30.30629 * 12 11 10 38 38 H 1.09002 * 109.46927 * 150.31231 * 12 11 10 39 39 H 1.08005 * 126.42865 * 179.71903 * 13 11 10 40 40 H 1.08992 * 109.47482 * 193.15955 * 18 16 6 41 41 H 1.09002 * 109.46736 * 313.16096 * 18 16 6 42 42 H 0.97000 * 120.00468 * 355.28830 * 19 18 16 43 43 H 0.97003 * 119.99963 * 180.02562 * 23 22 20 44 44 H 1.09003 * 109.49744 * 301.33213 * 28 2 1 45 45 H 1.08996 * 109.49881 * 61.43231 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5713 -0.6887 -1.2642 6 7 4.0678 -1.2489 0.0001 7 6 4.9620 -2.2573 0.0002 8 8 5.4294 -2.6553 1.0496 9 6 5.3740 -2.8790 -1.2743 10 7 5.0280 -2.4876 -2.4846 11 7 5.5667 -3.2504 -3.3670 12 6 5.4005 -3.1054 -4.8153 13 6 6.3069 -4.2130 -2.7625 14 6 6.2099 -4.0109 -1.4266 15 17 6.9550 -4.9439 -0.1662 16 6 3.5714 -0.6886 1.2643 17 1 3.9143 0.3410 1.3673 18 6 4.0939 -1.5229 2.4355 19 7 5.5210 -1.2535 2.6285 20 6 6.1871 -1.8157 3.6846 21 1 5.6604 -2.4574 4.3755 22 6 7.5392 -1.5601 3.8678 23 7 8.1809 -0.7777 3.0262 24 14 8.4477 -2.3265 5.3088 25 1 9.0057 -3.6405 4.8998 26 1 9.5531 -1.4291 5.7308 27 1 7.5068 -2.5192 6.4414 28 6 2.0398 -0.7210 1.2500 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6978 -1.7558 -1.2382 33 1 1.6573 -0.2209 -2.1398 34 1 3.9417 -1.2847 -2.0983 35 1 3.9143 0.3408 -1.3673 36 1 4.5351 -3.6824 -5.1412 37 1 5.2495 -2.0541 -5.0603 38 1 6.2933 -3.4720 -5.3219 39 1 6.8677 -4.9942 -3.2541 40 1 3.5485 -1.2590 3.3415 41 1 3.9500 -2.5817 2.2201 42 1 5.9940 -0.6770 2.0083 43 1 9.1258 -0.5993 3.1540 44 1 1.6572 -0.2211 2.1398 45 1 1.6977 -1.7558 1.2380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489036971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:10 Heat of formation + Delta-G solvation = 81.365190 kcal Electronic energy + Delta-G solvation = -29056.313493 eV Core-core repulsion = 25138.215221 eV Total energy + Delta-G solvation = -3918.098273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.69320 -41.22446 -38.43713 -37.40130 -36.38061 -34.89093 -34.29349 -33.47177 -31.78234 -31.34139 -29.39024 -28.11113 -27.09975 -24.75315 -24.34102 -23.96172 -22.44216 -22.29533 -21.00298 -20.22711 -19.05744 -18.25378 -17.50117 -17.34195 -16.77919 -16.66118 -15.89891 -15.58734 -15.44261 -15.35936 -15.14784 -14.86126 -14.66633 -14.41206 -14.36439 -14.04408 -13.73287 -13.64980 -13.45530 -13.21043 -12.92996 -12.79943 -12.74297 -12.63973 -12.53456 -12.41781 -12.09587 -11.98397 -11.78872 -11.67410 -11.55760 -11.22555 -10.83476 -10.73877 -10.28474 -10.01837 -9.76375 -9.34868 -8.58319 -7.78184 -4.96242 0.54259 0.91879 1.06688 1.43176 1.47818 1.54341 1.76334 2.22818 2.55058 2.65159 3.40054 3.54849 3.69743 3.77255 3.85726 3.94930 4.04288 4.15254 4.33821 4.38240 4.41343 4.47133 4.51468 4.53207 4.58694 4.75107 4.76378 4.81062 4.82021 4.90684 4.96924 5.06900 5.13711 5.16251 5.22364 5.26711 5.35513 5.44872 5.56408 5.59345 5.76129 6.00089 6.42064 6.61608 6.83261 7.48070 7.56735 8.28704 8.52378 9.46971 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008537 B = 0.005611 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.933394 B = 4989.282991 C = 7644.440288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.113 4.113 5 C 0.072 3.928 6 N -0.601 5.601 7 C 0.543 3.457 8 O -0.475 6.475 9 C -0.015 4.015 10 N -0.253 5.253 11 N -0.275 5.275 12 C 0.075 3.925 13 C 0.022 3.978 14 C -0.141 4.141 15 Cl -0.033 7.033 16 C 0.149 3.851 17 H 0.058 0.942 18 C 0.166 3.834 19 N -0.699 5.699 20 C -0.203 4.203 21 H 0.061 0.939 22 C -0.082 4.082 23 N -0.973 5.973 24 Si 0.961 3.039 25 H -0.298 1.298 26 H -0.294 1.294 27 H -0.270 1.270 28 C -0.110 4.110 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.139 0.861 35 H 0.056 0.944 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.232 0.768 40 H 0.018 0.982 41 H 0.017 0.983 42 H 0.366 0.634 43 H 0.242 0.758 44 H 0.082 0.918 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.018 -3.281 -23.024 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.090 0.910 4 C -0.152 4.152 5 C -0.051 4.051 6 N -0.337 5.337 7 C 0.327 3.673 8 O -0.344 6.344 9 C -0.174 4.174 10 N -0.090 5.090 11 N -0.062 5.062 12 C -0.062 4.062 13 C -0.123 4.123 14 C -0.179 4.179 15 Cl -0.005 7.005 16 C 0.045 3.955 17 H 0.076 0.924 18 C 0.039 3.961 19 N -0.340 5.340 20 C -0.336 4.336 21 H 0.079 0.921 22 C -0.273 4.273 23 N -0.627 5.627 24 Si 0.792 3.208 25 H -0.226 1.226 26 H -0.221 1.221 27 H -0.196 1.196 28 C -0.149 4.149 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.156 0.844 35 H 0.075 0.925 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.147 0.853 39 H 0.249 0.751 40 H 0.036 0.964 41 H 0.035 0.965 42 H 0.198 0.802 43 H 0.051 0.949 44 H 0.100 0.900 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.341 -2.889 -22.875 27.153 hybrid contribution 1.765 -0.884 1.446 2.447 sum -12.576 -3.774 -21.429 25.132 Atomic orbital electron populations 1.21754 0.93357 1.01949 1.02461 1.21129 0.96803 0.99215 0.93667 0.90964 1.21878 0.93829 1.00780 0.98668 1.22805 0.95444 0.99825 0.87037 1.47805 1.43421 1.34823 1.07639 1.17649 0.80567 0.82156 0.86962 1.91318 1.52408 1.61023 1.29640 1.22119 1.03945 0.98873 0.92453 1.73098 1.20200 1.18651 0.97010 1.46166 1.32039 1.18857 1.09146 1.22774 1.06920 1.06849 0.69692 1.23105 1.01076 0.97968 0.90186 1.21167 1.05989 0.99317 0.91396 1.98374 1.80488 1.70762 1.50868 1.21363 0.94988 0.96194 0.82938 0.92400 1.20862 0.84851 0.96603 0.93784 1.42272 1.05269 1.56265 1.30174 1.19438 0.92260 1.20158 1.01746 0.92144 1.25289 0.97401 1.02653 1.01939 1.69836 1.08544 1.44021 1.40281 0.85282 0.78414 0.77153 0.79939 1.22633 1.22116 1.19556 1.21904 0.91795 1.01420 0.99781 0.92878 0.92346 0.91211 0.92575 0.88530 0.84443 0.92527 0.87264 0.87478 0.85312 0.75118 0.96426 0.96492 0.80247 0.94886 0.89973 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.19 71.98 0.66 -1.55 16 2 C -0.09 -1.88 2.68 -10.77 -0.03 -1.91 16 3 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 4 C -0.11 -2.33 5.36 30.67 0.16 -2.17 16 5 C 0.07 1.94 6.33 86.36 0.55 2.49 16 6 N -0.60 -21.93 2.97 -798.59 -2.37 -24.30 16 7 C 0.54 23.59 7.33 86.73 0.64 24.22 16 8 O -0.48 -25.25 9.61 -3.96 -0.04 -25.29 16 9 C -0.01 -0.54 6.90 42.45 0.29 -0.25 16 10 N -0.25 -6.85 8.30 -48.18 -0.40 -7.25 16 11 N -0.27 -5.15 3.72 -368.87 -1.37 -6.52 16 12 C 0.07 0.40 11.32 127.77 1.45 1.84 16 13 C 0.02 0.47 11.49 83.46 0.96 1.43 16 14 C -0.14 -4.75 6.80 22.44 0.15 -4.60 16 15 Cl -0.03 -1.30 28.19 -2.72 -0.08 -1.38 16 16 C 0.15 5.52 2.90 44.98 0.13 5.65 16 17 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 18 C 0.17 7.83 4.90 86.38 0.42 8.25 16 19 N -0.70 -40.63 3.21 -343.46 -1.10 -41.73 16 20 C -0.20 -12.85 9.71 84.03 0.82 -12.04 16 21 H 0.06 3.76 7.83 -2.91 -0.02 3.74 16 22 C -0.08 -5.28 5.50 84.86 0.47 -4.81 16 23 N -0.97 -66.03 13.06 21.65 0.28 -65.75 16 24 Si 0.96 51.83 29.55 68.60 2.03 53.86 16 25 H -0.30 -16.12 7.11 99.48 0.71 -15.41 16 26 H -0.29 -15.66 7.11 99.48 0.71 -14.96 16 27 H -0.27 -13.74 7.11 99.48 0.71 -13.03 16 28 C -0.11 -3.03 4.63 30.67 0.14 -2.89 16 29 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.14 3.63 3.69 -90.23 -0.33 3.30 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.13 -0.07 8.13 -2.39 -0.02 -0.09 16 39 H 0.23 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.02 0.83 8.09 -2.39 -0.02 0.81 16 41 H 0.02 0.89 6.34 -2.39 -0.02 0.88 16 42 H 0.37 22.96 7.26 -92.71 -0.67 22.29 16 43 H 0.24 15.97 8.31 -92.71 -0.77 15.20 16 44 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -88.30 370.37 3.77 -84.54 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.01 Total: 20.14 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 6.81 Total: 13.68 kcal Atomic # 7 Polarization: -140.59 SS G_CDS: -4.96 Total: -145.56 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.04 Total: -25.29 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 2.03 Total: 53.86 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -88.30 3.77 -84.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489036971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.901 kcal (2) G-P(sol) polarization free energy of solvation -88.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds