Wall clock time and date at job start Sat Apr 11 2020 06:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.46743 * 2 1 4 4 N 1.46491 * 109.47205 * 120.00074 * 2 1 3 5 5 C 1.36942 * 120.00151 * 274.72671 * 4 2 1 6 6 H 1.08002 * 119.99925 * 0.27279 * 5 4 2 7 7 C 1.38810 * 119.99833 * 180.27738 * 5 4 2 8 8 N 1.31613 * 120.00256 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99756 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47276 * 59.99976 * 9 7 5 11 11 H 1.48502 * 109.47375 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47190 * 300.00132 * 9 7 5 13 13 C 1.52998 * 109.46989 * 240.00413 * 2 1 3 14 14 C 1.53038 * 109.45930 * 180.02562 * 13 2 1 15 15 C 1.53196 * 109.31296 * 178.61532 * 14 13 2 16 16 N 1.46928 * 108.77586 * 54.63251 * 15 14 13 17 17 C 1.34772 * 120.62637 * 126.37118 * 16 15 14 18 18 O 1.21651 * 119.99871 * 174.73166 * 17 16 15 19 19 C 1.47032 * 120.00445 * 354.73644 * 17 16 15 20 20 C 1.38540 * 126.90358 * 269.23392 * 19 17 16 21 21 Cl 1.73605 * 127.33839 * 359.92754 * 20 19 17 22 22 C 1.39805 * 105.32743 * 179.97438 * 20 19 17 23 23 N 1.30844 * 107.87449 * 0.02562 * 22 20 19 24 24 N 1.28432 * 110.97871 * 359.75252 * 23 22 20 25 25 C 1.46504 * 125.18473 * 180.24288 * 24 23 22 26 26 C 1.46925 * 118.73871 * 306.38856 * 16 15 14 27 27 C 1.53039 * 109.46117 * 59.99451 * 13 2 1 28 28 H 1.09000 * 109.47017 * 59.99713 * 1 2 3 29 29 H 1.09005 * 109.46743 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46769 * 299.99332 * 1 2 3 31 31 H 0.97002 * 120.00255 * 94.99969 * 4 2 1 32 32 H 0.97003 * 120.00276 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.46027 * 300.02206 * 13 2 1 34 34 H 1.08999 * 109.49670 * 298.56483 * 14 13 2 35 35 H 1.08997 * 109.50223 * 58.66020 * 14 13 2 36 36 H 1.08999 * 109.58297 * 294.84223 * 15 14 13 37 37 H 1.08998 * 109.58686 * 174.42313 * 15 14 13 38 38 H 1.07997 * 126.06285 * 179.97438 * 22 20 19 39 39 H 1.08991 * 109.46857 * 275.11855 * 25 24 23 40 40 H 1.09004 * 109.47006 * 35.12042 * 25 24 23 41 41 H 1.09005 * 109.46806 * 155.11701 * 25 24 23 42 42 H 1.08998 * 109.59034 * 293.82812 * 26 16 15 43 43 H 1.08998 * 109.70419 * 173.46100 * 26 16 15 44 44 H 1.08998 * 109.49990 * 301.33834 * 27 13 2 45 45 H 1.09001 * 109.49915 * 61.40654 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1545 -0.0061 2.3743 6 1 1.8977 1.0418 2.4229 7 6 2.6227 -0.6591 3.5062 8 7 2.9363 -1.9360 3.4469 9 14 2.8091 0.2747 5.1133 10 1 1.4887 0.8122 5.5295 11 1 3.3225 -0.6426 6.1622 12 1 3.7635 1.3969 4.9259 13 6 2.0400 -0.7212 -1.2493 14 6 3.5704 -0.7216 -1.2487 15 6 4.0773 -1.4744 -2.4829 16 7 3.4745 -0.8766 -3.6821 17 6 4.2479 -0.4570 -4.7030 18 8 3.7342 -0.0526 -5.7289 19 6 5.7124 -0.4880 -4.5768 20 6 6.5286 0.5281 -4.1069 21 17 6.0403 2.0975 -3.5480 22 6 7.8293 0.0208 -4.1798 23 7 7.7599 -1.1955 -4.6570 24 7 6.5422 -1.5272 -4.8952 25 6 6.1087 -2.8205 -5.4296 26 6 2.0126 -0.7448 -3.7470 27 6 1.5297 0.0005 -2.4986 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 2.2491 -1.6318 1.1525 32 1 3.2631 -2.3925 4.2380 33 1 1.6763 -1.7487 -1.2494 34 1 3.9345 0.3055 -1.2741 35 1 3.9338 -1.2146 -0.3471 36 1 3.7907 -2.5237 -2.4141 37 1 5.1628 -1.3930 -2.5403 38 1 8.7315 0.5410 -3.8938 39 1 6.1755 -2.8050 -6.5174 40 1 6.7506 -3.6093 -5.0373 41 1 5.0773 -3.0095 -5.1315 42 1 1.5575 -1.7346 -3.7812 43 1 1.7335 -0.1832 -4.6385 44 1 0.4399 0.0215 -2.4870 45 1 1.9131 1.0207 -2.5117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493824786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:22 Heat of formation + Delta-G solvation = 30.486719 kcal Electronic energy + Delta-G solvation = -28254.116193 eV Core-core repulsion = 24333.811665 eV Total energy + Delta-G solvation = -3920.304529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.76844 -41.19474 -39.22362 -37.68794 -36.94399 -34.71737 -34.41497 -32.90748 -32.17911 -31.60577 -29.90168 -28.18150 -26.83658 -25.84653 -24.46255 -23.66790 -22.93408 -21.99729 -21.10182 -20.33264 -19.28895 -18.84032 -17.95323 -17.07042 -16.92308 -16.79353 -16.50756 -15.74924 -15.52411 -15.45946 -15.39076 -15.01355 -14.70114 -14.65080 -14.22932 -14.12287 -13.98652 -13.68084 -13.58600 -13.48002 -13.00868 -12.94214 -12.87591 -12.79090 -12.72858 -12.31132 -12.21340 -12.14610 -11.83402 -11.66117 -11.59387 -11.42220 -11.25036 -11.20063 -10.86055 -10.38256 -9.87792 -9.84409 -8.92466 -7.89610 -5.15078 0.30047 0.66773 1.07131 1.34745 1.48670 1.49669 1.55547 1.56072 1.96981 2.59171 3.05380 3.44352 3.45223 3.74814 3.77046 3.82796 3.91383 4.07967 4.19531 4.21824 4.25301 4.31484 4.34861 4.39085 4.50779 4.55762 4.57988 4.73763 4.79240 4.86464 4.91761 5.02778 5.06292 5.08075 5.15420 5.25259 5.30901 5.46027 5.48788 5.52399 5.60433 5.70334 6.06561 6.33662 6.73725 6.75488 7.40554 8.18764 8.41853 9.33371 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012725 B = 0.003315 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.943339 B = 8443.743837 C = 9157.046623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 H 0.031 0.969 4 N -0.730 5.730 5 C -0.233 4.233 6 H 0.067 0.933 7 C -0.070 4.070 8 N -0.966 5.966 9 Si 0.960 3.040 10 H -0.282 1.282 11 H -0.296 1.296 12 H -0.282 1.282 13 C -0.078 4.078 14 C -0.114 4.114 15 C 0.117 3.883 16 N -0.584 5.584 17 C 0.596 3.404 18 O -0.553 6.553 19 C -0.019 4.019 20 C -0.132 4.132 21 Cl -0.024 7.024 22 C 0.024 3.976 23 N -0.278 5.278 24 N -0.263 5.263 25 C 0.076 3.924 26 C 0.114 3.886 27 C -0.120 4.120 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.027 0.973 31 H 0.374 0.626 32 H 0.249 0.751 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.220 0.780 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.624 -1.018 -20.237 20.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.049 0.951 4 N -0.371 5.371 5 C -0.365 4.365 6 H 0.085 0.915 7 C -0.262 4.262 8 N -0.617 5.617 9 Si 0.791 3.209 10 H -0.208 1.208 11 H -0.223 1.223 12 H -0.208 1.208 13 C -0.098 4.098 14 C -0.152 4.152 15 C -0.005 4.005 16 N -0.315 5.315 17 C 0.380 3.620 18 O -0.430 6.430 19 C -0.150 4.150 20 C -0.170 4.170 21 Cl 0.004 6.996 22 C -0.153 4.153 23 N -0.109 5.109 24 N -0.051 5.051 25 C -0.062 4.062 26 C -0.007 4.007 27 C -0.158 4.158 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.206 0.794 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.237 0.763 39 H 0.122 0.878 40 H 0.143 0.857 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.109 0.891 44 H 0.119 0.881 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.888 -1.628 -20.967 21.590 hybrid contribution -0.178 1.128 1.717 2.062 sum 4.709 -0.501 -19.249 19.823 Atomic orbital electron populations 1.22354 0.97834 1.00958 1.00501 1.20431 0.92628 0.94604 0.85906 0.95121 1.42530 1.78313 1.10161 1.06048 1.19493 1.34375 0.93879 0.88730 0.91461 1.25347 1.03301 0.96776 1.00824 1.69768 1.52733 1.09930 1.29268 0.85405 0.77750 0.77466 0.80318 1.20846 1.22277 1.20843 1.21257 0.94461 1.00082 0.93959 1.21715 0.96318 1.00264 0.96924 1.21831 0.97808 0.97895 0.83016 1.48176 1.07934 1.58518 1.16890 1.16962 0.83960 0.77689 0.83381 1.90828 1.74383 1.48069 1.29740 1.21151 0.92661 0.91639 1.09575 1.21457 0.94287 0.90299 1.10943 1.98366 1.91581 1.21953 1.87660 1.23964 0.97358 0.91235 1.02756 1.73254 1.02274 1.16652 1.18734 1.45865 1.02193 1.12694 1.44365 1.22643 1.03010 0.78908 1.01676 1.21862 0.77110 1.02528 0.99223 1.21964 1.02394 0.98909 0.92535 0.90719 0.93515 0.95341 0.79375 0.94231 0.90574 0.93222 0.91759 0.88653 0.90634 0.76339 0.87811 0.85735 0.87998 0.88505 0.89063 0.88146 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.07 9.14 71.98 0.66 -4.42 16 2 C 0.17 6.23 2.47 45.00 0.11 6.34 16 3 H 0.03 1.20 8.08 -2.38 -0.02 1.18 16 4 N -0.73 -34.40 4.41 -322.94 -1.42 -35.82 16 5 C -0.23 -12.52 9.93 84.03 0.83 -11.69 16 6 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 7 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 8 N -0.97 -57.22 13.06 21.65 0.28 -56.94 16 9 Si 0.96 45.66 29.55 68.60 2.03 47.68 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 C -0.08 -2.16 1.79 -10.77 -0.02 -2.18 16 14 C -0.11 -3.31 5.22 30.67 0.16 -3.15 16 15 C 0.12 2.62 6.35 86.36 0.55 3.17 16 16 N -0.58 -13.07 2.97 -823.21 -2.45 -15.52 16 17 C 0.60 15.36 6.79 86.55 0.59 15.95 16 18 O -0.55 -17.32 16.55 -4.19 -0.07 -17.39 16 19 C -0.02 -0.47 4.65 40.76 0.19 -0.28 16 20 C -0.13 -3.25 6.89 22.72 0.16 -3.09 16 21 Cl -0.02 -0.61 29.24 -2.72 -0.08 -0.69 16 22 C 0.02 0.51 12.04 85.22 1.03 1.53 16 23 N -0.28 -6.03 11.89 -57.07 -0.68 -6.71 16 24 N -0.26 -5.34 3.75 -355.92 -1.34 -6.68 16 25 C 0.08 0.88 11.22 127.77 1.43 2.32 16 26 C 0.11 2.25 6.42 86.37 0.55 2.80 16 27 C -0.12 -2.61 5.04 30.67 0.15 -2.46 16 28 H 0.07 1.87 6.40 -2.39 -0.02 1.85 16 29 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.37 18.77 7.58 -92.71 -0.70 18.07 16 32 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 2.28 7.41 -2.39 -0.02 2.26 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.08 1.76 6.32 -2.39 -0.02 1.74 16 38 H 0.22 3.20 8.06 -2.91 -0.02 3.17 16 39 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.10 1.03 7.66 -2.38 -0.02 1.01 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.09 1.90 7.04 -2.39 -0.02 1.89 16 44 H 0.10 1.85 6.36 -2.39 -0.02 1.84 16 45 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -69.50 380.51 3.45 -66.05 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.31 Total: 24.63 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 6.86 Total: 1.39 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -5.60 Total: -121.67 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.07 Total: -17.39 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -69.50 3.45 -66.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493824786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.537 kcal (2) G-P(sol) polarization free energy of solvation -69.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds