Wall clock time and date at job start Sat Apr 11 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46597 * 2 1 4 4 N 1.46502 * 109.47027 * 119.99364 * 2 1 3 5 5 C 1.36932 * 120.00318 * 274.99833 * 4 2 1 6 6 H 1.07997 * 120.00201 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99898 * 179.97438 * 5 4 2 8 8 N 1.31623 * 120.00065 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00124 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47424 * 89.99624 * 9 7 5 11 11 H 1.48503 * 109.46860 * 209.99551 * 9 7 5 12 12 H 1.48504 * 109.46880 * 329.99276 * 9 7 5 13 13 C 1.52991 * 109.47188 * 239.99847 * 2 1 3 14 14 H 1.08998 * 109.52467 * 185.07610 * 13 2 1 15 15 C 1.53043 * 109.50011 * 64.99879 * 13 2 1 16 16 C 1.53032 * 109.52965 * 178.69014 * 15 13 2 17 17 C 1.53167 * 109.32765 * 61.37300 * 16 15 13 18 18 N 1.46922 * 108.76824 * 305.35429 * 17 16 15 19 19 C 1.34779 * 120.63332 * 233.59336 * 18 17 16 20 20 O 1.21618 * 120.00102 * 174.54897 * 19 18 17 21 21 C 1.47305 * 119.99886 * 354.53773 * 19 18 17 22 22 C 1.41339 * 126.43168 * 320.18523 * 21 19 18 23 23 N 1.30417 * 108.04558 * 179.97438 * 22 21 19 24 24 N 1.39930 * 108.95621 * 0.02562 * 23 22 21 25 25 C 1.46505 * 125.74755 * 179.97438 * 24 23 22 26 26 C 1.34344 * 108.50084 * 359.72733 * 24 23 22 27 27 Cl 1.73604 * 126.31847 * 180.25976 * 26 24 23 28 28 C 1.46932 * 118.73918 * 53.60616 * 18 17 16 29 29 H 1.08999 * 109.47245 * 299.99842 * 1 2 3 30 30 H 1.08996 * 109.47681 * 60.00168 * 1 2 3 31 31 H 1.09003 * 109.46677 * 180.02562 * 1 2 3 32 32 H 0.96999 * 119.99383 * 95.00692 * 4 2 1 33 33 H 0.96995 * 119.99911 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.45836 * 298.70311 * 15 13 2 35 35 H 1.09002 * 109.46003 * 58.67023 * 15 13 2 36 36 H 1.09003 * 109.50190 * 181.30826 * 16 15 13 37 37 H 1.08998 * 109.50183 * 301.40335 * 16 15 13 38 38 H 1.09006 * 109.59150 * 185.56899 * 17 16 15 39 39 H 1.09002 * 109.59060 * 65.13810 * 17 16 15 40 40 H 1.07993 * 125.98064 * 359.97438 * 22 21 19 41 41 H 1.09005 * 109.46501 * 89.97638 * 25 24 23 42 42 H 1.08998 * 109.47119 * 209.97686 * 25 24 23 43 43 H 1.09003 * 109.47006 * 329.97881 * 25 24 23 44 44 H 1.08997 * 109.59144 * 186.60464 * 28 18 17 45 45 H 1.09000 * 109.58313 * 66.18121 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1492 -0.0073 2.3757 6 1 1.8920 1.0405 2.4243 7 6 2.6113 -0.6618 3.5093 8 7 2.7366 -0.0052 4.6432 9 14 3.0555 -2.4743 3.4255 10 1 4.4883 -2.6166 3.0622 11 1 2.8155 -3.1044 4.7487 12 1 2.2158 -3.1428 2.3992 13 6 2.0400 -0.7212 -1.2491 14 1 3.1262 -0.8011 -1.2057 15 6 1.6355 0.0686 -2.4960 16 6 2.1733 -0.6350 -3.7441 17 6 1.5612 -2.0358 -3.8398 18 7 1.8219 -2.7524 -2.5839 19 6 2.4124 -3.9638 -2.5944 20 8 2.7129 -4.5030 -1.5464 21 6 2.6937 -4.6351 -3.8751 22 6 1.8543 -4.6597 -5.0119 23 7 2.4525 -5.3526 -5.9409 24 7 3.6851 -5.7994 -5.4520 25 6 4.6558 -6.6107 -6.1910 26 6 3.8309 -5.3545 -4.1928 27 17 5.1938 -5.6347 -3.1546 28 6 1.4264 -2.1233 -1.3164 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6316 1.1527 33 1 3.0599 -0.4625 5.4352 34 1 0.5484 0.1269 -2.5521 35 1 2.0506 1.0748 -2.4390 36 1 1.9048 -0.0598 -4.6302 37 1 3.2582 -0.7157 -3.6772 38 1 2.0148 -2.5769 -4.6702 39 1 0.4857 -1.9547 -3.9977 40 1 0.8868 -4.1875 -5.0966 41 1 5.3451 -5.9560 -6.7244 42 1 5.2139 -7.2348 -5.4931 43 1 4.1304 -7.2446 -6.9053 44 1 1.7911 -2.7221 -0.4818 45 1 0.3400 -2.0494 -1.2685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496442465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:37 Heat of formation + Delta-G solvation = 58.057013 kcal Electronic energy + Delta-G solvation = -28172.204093 eV Core-core repulsion = 24253.095102 eV Total energy + Delta-G solvation = -3919.108991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.88341 -39.92154 -37.79291 -37.26059 -35.56756 -33.99643 -32.86348 -31.90069 -30.73027 -30.09780 -28.35607 -27.47388 -25.58005 -24.46173 -22.99382 -22.61015 -21.62531 -20.96990 -19.76141 -18.80642 -17.92639 -17.39499 -16.77842 -16.26467 -15.94168 -15.17360 -14.90203 -14.70856 -14.69185 -14.30120 -14.05443 -13.90558 -13.45522 -13.38058 -13.23375 -13.01006 -12.81614 -12.62712 -12.53377 -12.38989 -12.13166 -12.03985 -11.59861 -11.29968 -11.22262 -11.08531 -10.85188 -10.64347 -10.46998 -10.32228 -10.06723 -9.94083 -9.89113 -9.72288 -9.47663 -9.03978 -8.85230 -8.46103 -7.19048 -5.69350 -3.04304 0.94316 0.99000 1.79583 2.09360 2.86899 3.18783 3.49356 3.55201 3.58519 3.90928 4.43907 4.57544 4.59651 4.69130 4.72673 4.82088 4.87562 4.90220 4.93590 5.04174 5.17770 5.28244 5.42568 5.53473 5.61004 5.64868 5.79273 5.81194 5.83886 5.87592 6.03867 6.05524 6.06584 6.21275 6.30270 6.34034 6.52053 6.54528 6.69911 6.84679 6.94261 7.09627 7.45495 8.07153 8.25384 8.49954 9.29194 10.02386 10.21754 11.48946 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.003572 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.609999 B = 7837.942302 C = 9346.125721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.186 3.814 3 H 0.058 0.942 4 N -0.750 5.750 5 C -0.240 4.240 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.936 5.936 9 Si 0.879 3.121 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.273 1.273 13 C -0.108 4.108 14 H 0.075 0.925 15 C -0.113 4.113 16 C -0.134 4.134 17 C 0.102 3.898 18 N -0.603 5.603 19 C 0.588 3.412 20 O -0.525 6.525 21 C -0.259 4.259 22 C 0.089 3.911 23 N -0.274 5.274 24 N -0.355 5.355 25 C 0.091 3.909 26 C 0.173 3.827 27 Cl 0.026 6.974 28 C 0.116 3.884 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.362 0.638 33 H 0.258 0.742 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.201 0.799 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.440 -9.726 -28.002 29.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.076 3.924 3 H 0.076 0.924 4 N -0.393 5.393 5 C -0.370 4.370 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.584 5.584 9 Si 0.709 3.291 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.199 1.199 13 C -0.128 4.128 14 H 0.094 0.906 15 C -0.151 4.151 16 C -0.172 4.172 17 C -0.021 4.021 18 N -0.337 5.337 19 C 0.375 3.625 20 O -0.401 6.401 21 C -0.276 4.276 22 C -0.098 4.098 23 N -0.095 5.095 24 N -0.138 5.138 25 C -0.049 4.049 26 C 0.015 3.985 27 Cl 0.054 6.946 28 C -0.006 4.006 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.195 0.805 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.217 0.783 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.119 0.881 44 H 0.112 0.888 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.770 -10.419 -28.419 30.278 hybrid contribution 0.591 -1.047 0.922 1.515 sum 1.362 -11.466 -27.497 29.823 Atomic orbital electron populations 1.22547 0.99053 1.00909 1.00487 1.20145 0.91975 0.95550 0.84747 0.92425 1.42873 1.79767 1.09508 1.07168 1.19055 1.36746 0.95457 0.85742 0.89234 1.24642 1.01452 0.97400 0.95568 1.69705 1.52872 1.35574 1.00262 0.86629 0.78796 0.86808 0.76836 1.21115 1.21830 1.19923 1.21833 1.01120 0.94273 0.95586 0.90644 1.21592 1.01180 0.98983 0.93335 1.21910 1.01119 0.95313 0.98857 1.21932 1.00525 0.93284 0.86333 1.47951 1.60243 1.17380 1.08081 1.17130 0.77516 0.80760 0.87076 1.90851 1.51488 1.65003 1.32733 1.19926 0.96742 1.12349 0.98535 1.24067 0.99963 0.96652 0.89113 1.77329 0.92335 1.17896 1.21979 1.48498 1.15752 1.40769 1.08780 1.22105 0.90350 0.94891 0.97601 1.22025 0.92633 0.97943 0.85864 1.98471 1.39281 1.94637 1.62204 1.21877 0.99552 0.93834 0.85316 0.92426 0.93956 0.93320 0.80464 0.93163 0.91323 0.91424 0.90875 0.91614 0.89758 0.91175 0.78286 0.89654 0.88907 0.88117 0.88787 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 8.76 37.16 0.33 -2.52 16 2 C 0.19 3.47 2.67 -67.93 -0.18 3.28 16 3 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 4 N -0.75 -17.97 4.86 -53.43 -0.26 -18.23 16 5 C -0.24 -6.85 10.41 -15.06 -0.16 -7.01 16 6 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 7 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 8 N -0.94 -30.05 13.97 55.49 0.78 -29.27 16 9 Si 0.88 23.44 27.74 -169.99 -4.71 18.73 16 10 H -0.28 -7.62 7.11 56.52 0.40 -7.22 16 11 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 12 H -0.27 -7.05 6.52 56.52 0.37 -6.69 16 13 C -0.11 -1.66 2.27 -90.50 -0.21 -1.86 16 14 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 15 C -0.11 -1.28 4.89 -26.69 -0.13 -1.41 16 16 C -0.13 -1.26 6.08 -26.63 -0.16 -1.42 16 17 C 0.10 0.95 5.46 -3.73 -0.02 0.93 16 18 N -0.60 -8.05 2.97 -174.09 -0.52 -8.57 16 19 C 0.59 8.98 7.47 -12.57 -0.09 8.89 16 20 O -0.52 -10.23 16.06 5.26 0.08 -10.15 16 21 C -0.26 -3.21 5.22 -105.02 -0.55 -3.76 16 22 C 0.09 0.85 9.61 -16.97 -0.16 0.69 16 23 N -0.27 -2.76 12.49 30.87 0.39 -2.38 16 24 N -0.36 -3.36 3.98 -64.32 -0.26 -3.62 16 25 C 0.09 0.46 11.28 59.85 0.67 1.13 16 26 C 0.17 2.01 7.52 -16.44 -0.12 1.88 16 27 Cl 0.03 0.30 28.17 -51.86 -1.46 -1.16 16 28 C 0.12 1.80 5.19 -3.71 -0.02 1.78 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.04 0.57 6.60 -51.93 -0.34 0.23 16 31 H 0.05 0.80 6.23 -51.93 -0.32 0.48 16 32 H 0.36 8.84 4.34 -40.82 -0.18 8.66 16 33 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 34 H 0.07 0.72 6.63 -51.93 -0.34 0.37 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.69 4.75 -51.93 -0.25 0.44 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.20 1.28 7.32 -52.49 -0.38 0.90 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.37 7.78 -51.93 -0.40 -0.04 16 43 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 1.81 5.82 -51.93 -0.30 1.51 16 45 H 0.08 1.09 6.06 -51.93 -0.31 0.77 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -36.16 368.42 -7.54 -43.70 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.23 Total: 4.74 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -0.90 Total: 0.65 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 0.13 Total: -62.06 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -4.71 Total: 18.73 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.46 Total: -1.16 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.16 -7.54 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496442465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.757 kcal (2) G-P(sol) polarization free energy of solvation -36.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds