Wall clock time and date at job start Sat Apr 11 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46597 * 2 1 4 4 N 1.46502 * 109.47027 * 119.99364 * 2 1 3 5 5 C 1.36932 * 120.00318 * 274.99833 * 4 2 1 6 6 H 1.07997 * 120.00201 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99898 * 179.97438 * 5 4 2 8 8 N 1.31623 * 120.00065 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00124 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47424 * 89.99624 * 9 7 5 11 11 H 1.48503 * 109.46860 * 209.99551 * 9 7 5 12 12 H 1.48504 * 109.46880 * 329.99276 * 9 7 5 13 13 C 1.52991 * 109.47188 * 239.99847 * 2 1 3 14 14 H 1.08998 * 109.52467 * 185.07610 * 13 2 1 15 15 C 1.53043 * 109.50011 * 64.99879 * 13 2 1 16 16 C 1.53032 * 109.52965 * 178.69014 * 15 13 2 17 17 C 1.53167 * 109.32765 * 61.37300 * 16 15 13 18 18 N 1.46922 * 108.76824 * 305.35429 * 17 16 15 19 19 C 1.34779 * 120.63332 * 233.59336 * 18 17 16 20 20 O 1.21618 * 120.00102 * 174.54897 * 19 18 17 21 21 C 1.47305 * 119.99886 * 354.53773 * 19 18 17 22 22 C 1.41339 * 126.43168 * 320.18523 * 21 19 18 23 23 N 1.30417 * 108.04558 * 179.97438 * 22 21 19 24 24 N 1.39930 * 108.95621 * 0.02562 * 23 22 21 25 25 C 1.46505 * 125.74755 * 179.97438 * 24 23 22 26 26 C 1.34344 * 108.50084 * 359.72733 * 24 23 22 27 27 Cl 1.73604 * 126.31847 * 180.25976 * 26 24 23 28 28 C 1.46932 * 118.73918 * 53.60616 * 18 17 16 29 29 H 1.08999 * 109.47245 * 299.99842 * 1 2 3 30 30 H 1.08996 * 109.47681 * 60.00168 * 1 2 3 31 31 H 1.09003 * 109.46677 * 180.02562 * 1 2 3 32 32 H 0.96999 * 119.99383 * 95.00692 * 4 2 1 33 33 H 0.96995 * 119.99911 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.45836 * 298.70311 * 15 13 2 35 35 H 1.09002 * 109.46003 * 58.67023 * 15 13 2 36 36 H 1.09003 * 109.50190 * 181.30826 * 16 15 13 37 37 H 1.08998 * 109.50183 * 301.40335 * 16 15 13 38 38 H 1.09006 * 109.59150 * 185.56899 * 17 16 15 39 39 H 1.09002 * 109.59060 * 65.13810 * 17 16 15 40 40 H 1.07993 * 125.98064 * 359.97438 * 22 21 19 41 41 H 1.09005 * 109.46501 * 89.97638 * 25 24 23 42 42 H 1.08998 * 109.47119 * 209.97686 * 25 24 23 43 43 H 1.09003 * 109.47006 * 329.97881 * 25 24 23 44 44 H 1.08997 * 109.59144 * 186.60464 * 28 18 17 45 45 H 1.09000 * 109.58313 * 66.18121 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1492 -0.0073 2.3757 6 1 1.8920 1.0405 2.4243 7 6 2.6113 -0.6618 3.5093 8 7 2.7366 -0.0052 4.6432 9 14 3.0555 -2.4743 3.4255 10 1 4.4883 -2.6166 3.0622 11 1 2.8155 -3.1044 4.7487 12 1 2.2158 -3.1428 2.3992 13 6 2.0400 -0.7212 -1.2491 14 1 3.1262 -0.8011 -1.2057 15 6 1.6355 0.0686 -2.4960 16 6 2.1733 -0.6350 -3.7441 17 6 1.5612 -2.0358 -3.8398 18 7 1.8219 -2.7524 -2.5839 19 6 2.4124 -3.9638 -2.5944 20 8 2.7129 -4.5030 -1.5464 21 6 2.6937 -4.6351 -3.8751 22 6 1.8543 -4.6597 -5.0119 23 7 2.4525 -5.3526 -5.9409 24 7 3.6851 -5.7994 -5.4520 25 6 4.6558 -6.6107 -6.1910 26 6 3.8309 -5.3545 -4.1928 27 17 5.1938 -5.6347 -3.1546 28 6 1.4264 -2.1233 -1.3164 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6316 1.1527 33 1 3.0599 -0.4625 5.4352 34 1 0.5484 0.1269 -2.5521 35 1 2.0506 1.0748 -2.4390 36 1 1.9048 -0.0598 -4.6302 37 1 3.2582 -0.7157 -3.6772 38 1 2.0148 -2.5769 -4.6702 39 1 0.4857 -1.9547 -3.9977 40 1 0.8868 -4.1875 -5.0966 41 1 5.3451 -5.9560 -6.7244 42 1 5.2139 -7.2348 -5.4931 43 1 4.1304 -7.2446 -6.9053 44 1 1.7911 -2.7221 -0.4818 45 1 0.3400 -2.0494 -1.2685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496442465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:36 Heat of formation + Delta-G solvation = 32.685985 kcal Electronic energy + Delta-G solvation = -28173.304263 eV Core-core repulsion = 24253.095102 eV Total energy + Delta-G solvation = -3920.209161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.67626 -40.99761 -39.06326 -38.12762 -37.01432 -34.92306 -34.33571 -33.26339 -31.97109 -31.37130 -29.66490 -28.22614 -26.55581 -26.07871 -24.45825 -23.55317 -22.38027 -22.14368 -20.97166 -20.06011 -19.56872 -18.58723 -17.70713 -17.12142 -16.95625 -16.64281 -16.09858 -16.04827 -15.75755 -15.55835 -15.16681 -14.96277 -14.75911 -14.37919 -14.29115 -14.11942 -13.96901 -13.78629 -13.62704 -13.52301 -13.24500 -13.04392 -12.96480 -12.87302 -12.64738 -12.32298 -12.06308 -12.00954 -11.86235 -11.83372 -11.70108 -11.37029 -11.23640 -10.99673 -10.94252 -10.55975 -9.91693 -9.51466 -9.30147 -8.03982 -5.33924 0.10512 0.16955 0.99874 1.33242 1.36300 1.42294 1.42856 1.85443 2.17486 2.44569 3.23220 3.28625 3.55587 3.68030 3.79563 3.88635 3.95533 4.03493 4.15374 4.25147 4.29245 4.33266 4.35906 4.42864 4.57165 4.62268 4.64839 4.73873 4.84465 4.90451 4.95164 5.07732 5.11835 5.15238 5.19493 5.26784 5.38169 5.39634 5.49618 5.58437 5.71529 5.79254 6.20456 6.22271 6.42865 7.08326 7.16124 7.87524 8.03258 9.18025 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.003572 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.609999 B = 7837.942302 C = 9346.125721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.176 3.824 3 H 0.048 0.952 4 N -0.757 5.757 5 C -0.217 4.217 6 H 0.065 0.935 7 C -0.059 4.059 8 N -0.982 5.982 9 Si 0.939 3.061 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.264 1.264 13 C -0.096 4.096 14 H 0.048 0.952 15 C -0.107 4.107 16 C -0.128 4.128 17 C 0.097 3.903 18 N -0.599 5.599 19 C 0.583 3.417 20 O -0.581 6.581 21 C -0.281 4.281 22 C 0.101 3.899 23 N -0.280 5.280 24 N -0.348 5.348 25 C 0.079 3.921 26 C 0.164 3.836 27 Cl 0.016 6.984 28 C 0.120 3.880 29 H 0.030 0.970 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.360 0.640 33 H 0.256 0.744 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.048 0.952 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.233 0.767 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.118 0.882 44 H 0.050 0.950 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.853 -10.214 -32.289 33.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.068 3.932 3 H 0.066 0.934 4 N -0.400 5.400 5 C -0.348 4.348 6 H 0.083 0.917 7 C -0.250 4.250 8 N -0.634 5.634 9 Si 0.768 3.232 10 H -0.214 1.214 11 H -0.219 1.219 12 H -0.189 1.189 13 C -0.117 4.117 14 H 0.066 0.934 15 C -0.145 4.145 16 C -0.166 4.166 17 C -0.025 4.025 18 N -0.330 5.330 19 C 0.372 3.628 20 O -0.461 6.461 21 C -0.297 4.297 22 C -0.085 4.085 23 N -0.101 5.101 24 N -0.130 5.130 25 C -0.060 4.060 26 C 0.005 3.995 27 Cl 0.045 6.955 28 C -0.002 4.002 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.193 0.807 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.128 0.872 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.249 0.751 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.136 0.864 44 H 0.069 0.931 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.544 -10.893 -32.823 34.588 hybrid contribution 1.002 -0.823 2.129 2.493 sum 0.458 -11.716 -30.694 32.857 Atomic orbital electron populations 1.22390 0.96765 1.01402 1.01306 1.20461 0.93495 0.94980 0.84233 0.93359 1.43010 1.80050 1.09473 1.07489 1.19077 1.33977 0.94519 0.87203 0.91712 1.25280 1.02993 1.01184 0.95546 1.69842 1.55300 1.37200 1.01035 0.85653 0.78319 0.82460 0.76756 1.21363 1.21868 1.18944 1.21662 0.99305 0.94697 0.95993 0.93351 1.21590 1.02564 0.98536 0.91834 1.21904 1.00064 0.95565 0.99098 1.22306 1.02779 0.92761 0.84607 1.48016 1.59306 1.16976 1.08725 1.17580 0.76760 0.81058 0.87409 1.90815 1.53928 1.66528 1.34843 1.19799 0.98128 1.13597 0.98215 1.24488 1.00528 0.95994 0.87477 1.77327 0.92567 1.18065 1.22176 1.48844 1.15981 1.40080 1.08098 1.22511 0.90246 0.95258 0.97986 1.22107 0.92452 0.98249 0.86705 1.98464 1.39668 1.94685 1.62716 1.21656 1.00158 0.93034 0.85370 0.95104 0.89613 0.92944 0.80704 0.93452 0.89190 0.91057 0.87223 0.93267 0.88251 0.87840 0.75133 0.87843 0.88044 0.86384 0.93133 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 8.76 71.98 0.63 -4.41 16 2 C 0.18 6.49 2.67 44.99 0.12 6.61 16 3 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 4 N -0.76 -36.89 4.86 -322.95 -1.57 -38.46 16 5 C -0.22 -12.71 10.41 84.03 0.87 -11.83 16 6 H 0.06 4.07 8.06 -2.91 -0.02 4.05 16 7 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 8 N -0.98 -65.13 13.97 21.65 0.30 -64.82 16 9 Si 0.94 50.11 27.74 68.60 1.90 52.02 16 10 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 11 H -0.29 -15.50 7.11 99.48 0.71 -14.79 16 12 H -0.26 -13.52 6.52 99.48 0.65 -12.88 16 13 C -0.10 -2.85 2.27 -10.72 -0.02 -2.88 16 14 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 15 C -0.11 -2.06 4.89 30.62 0.15 -1.91 16 16 C -0.13 -1.88 6.08 30.66 0.19 -1.70 16 17 C 0.10 1.39 5.46 86.36 0.47 1.86 16 18 N -0.60 -14.87 2.97 -822.96 -2.45 -17.32 16 19 C 0.58 17.48 7.47 86.63 0.65 18.13 16 20 O -0.58 -23.30 16.06 -4.09 -0.07 -23.36 16 21 C -0.28 -6.51 5.22 -20.12 -0.10 -6.62 16 22 C 0.10 1.62 9.61 85.67 0.82 2.44 16 23 N -0.28 -4.78 12.49 -56.26 -0.70 -5.49 16 24 N -0.35 -5.79 3.98 -357.39 -1.42 -7.22 16 25 C 0.08 0.60 11.28 127.77 1.44 2.04 16 26 C 0.16 3.61 7.52 84.32 0.63 4.25 16 27 Cl 0.02 0.38 28.17 -2.72 -0.08 0.31 16 28 C 0.12 3.61 5.19 86.36 0.45 4.06 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.97 6.60 -2.39 -0.02 1.95 16 31 H 0.05 1.62 6.23 -2.39 -0.01 1.60 16 32 H 0.36 17.90 4.34 -92.71 -0.40 17.50 16 33 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 34 H 0.09 1.39 6.63 -2.38 -0.02 1.37 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.10 1.19 4.75 -2.38 -0.01 1.18 16 39 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.23 1.88 7.32 -2.91 -0.02 1.86 16 41 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.10 0.61 7.78 -2.39 -0.02 0.59 16 43 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.05 1.99 5.82 -2.39 -0.01 1.97 16 45 H 0.09 2.43 6.06 -2.39 -0.01 2.42 16 Total: -1.00 -83.38 368.42 3.25 -80.13 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.57 Total: 17.33 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 6.76 Total: 6.88 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -5.84 Total: -133.30 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.07 Total: -23.36 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 1.90 Total: 52.02 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -0.08 Total: 0.31 kcal Total: -83.38 3.25 -80.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496442465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.817 kcal (2) G-P(sol) polarization free energy of solvation -83.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds