Wall clock time and date at job start Sat Apr 11 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47563 * 2 1 4 4 N 1.46501 * 109.46955 * 239.99837 * 2 1 3 5 5 C 1.36927 * 120.00033 * 85.00223 * 4 2 1 6 6 H 1.07998 * 120.00516 * 359.97438 * 5 4 2 7 7 C 1.38817 * 120.00378 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99272 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00489 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47078 * 89.99791 * 9 7 5 11 11 H 1.48503 * 109.47222 * 210.00006 * 9 7 5 12 12 H 1.48507 * 109.47136 * 329.99682 * 9 7 5 13 13 C 1.53001 * 109.47286 * 119.99768 * 2 1 3 14 14 H 1.09006 * 109.49526 * 60.06341 * 13 2 1 15 15 C 1.53039 * 109.49650 * 300.00111 * 13 2 1 16 16 C 1.53038 * 109.53790 * 178.68230 * 15 13 2 17 17 C 1.53189 * 109.31549 * 61.36086 * 16 15 13 18 18 N 1.46924 * 108.77679 * 305.36982 * 17 16 15 19 19 C 1.34782 * 120.62873 * 233.58479 * 18 17 16 20 20 O 1.21619 * 119.99483 * 174.08429 * 19 18 17 21 21 C 1.47302 * 119.99983 * 354.35626 * 19 18 17 22 22 C 1.41342 * 126.43503 * 323.14913 * 21 19 18 23 23 N 1.30414 * 108.04452 * 179.97438 * 22 21 19 24 24 N 1.39925 * 108.96212 * 0.02562 * 23 22 21 25 25 C 1.46496 * 125.74904 * 179.97438 * 24 23 22 26 26 C 1.34348 * 108.50026 * 359.74721 * 24 23 22 27 27 Cl 1.73598 * 126.32082 * 180.24405 * 26 24 23 28 28 C 1.46925 * 118.74004 * 53.85442 * 18 17 16 29 29 H 1.09005 * 109.46956 * 300.00372 * 1 2 3 30 30 H 1.09000 * 109.47102 * 60.00208 * 1 2 3 31 31 H 1.08999 * 109.47318 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99959 * 264.99876 * 4 2 1 33 33 H 0.96995 * 119.99461 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.46457 * 58.66246 * 15 13 2 35 35 H 1.08999 * 109.44747 * 298.69309 * 15 13 2 36 36 H 1.08995 * 109.50040 * 301.41296 * 16 15 13 37 37 H 1.09000 * 109.52609 * 181.33137 * 16 15 13 38 38 H 1.09000 * 109.59002 * 185.57540 * 17 16 15 39 39 H 1.09008 * 109.58506 * 65.15559 * 17 16 15 40 40 H 1.07996 * 125.97490 * 359.96765 * 22 21 19 41 41 H 1.09007 * 109.47029 * 89.97788 * 25 24 23 42 42 H 1.08998 * 109.47242 * 209.97667 * 25 24 23 43 43 H 1.08998 * 109.47519 * 329.97785 * 25 24 23 44 44 H 1.09005 * 109.58398 * 65.93119 * 28 18 17 45 45 H 1.09002 * 109.59036 * 186.35295 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0076 -2.3757 6 1 1.8919 1.0402 -2.4244 7 6 2.6113 -0.6621 -3.5093 8 7 2.9242 -1.9392 -3.4501 9 14 2.7890 0.2695 -5.1185 10 1 4.1512 0.8545 -5.2040 11 1 2.5781 -0.6620 -6.2557 12 1 1.7789 1.3567 -5.1754 13 6 2.0400 -0.7212 1.2493 14 1 1.6778 -1.7493 1.2491 15 6 1.5302 -0.0002 2.4992 16 6 2.0126 -0.7397 3.7492 17 6 3.5442 -0.7369 3.7802 18 7 4.0438 -1.2970 2.5171 19 6 4.9187 -2.3222 2.5192 20 8 5.2422 -2.8475 1.4710 21 6 5.4785 -2.8103 3.7913 22 6 5.8319 -2.0223 4.9101 23 7 6.2892 -2.8182 5.8365 24 7 6.2523 -4.1346 5.3639 25 6 6.6817 -5.3227 6.1056 26 6 5.7519 -4.1260 4.1170 27 17 5.4988 -5.5107 3.1011 28 6 3.5762 -0.7144 1.2520 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.2490 -1.6318 -1.1526 33 1 3.2475 -2.3965 -4.2420 34 1 0.4405 0.0205 2.4875 35 1 1.9127 1.0204 2.5108 36 1 1.6512 -1.7678 3.7259 37 1 1.6298 -0.2396 4.6388 38 1 3.8940 -1.3458 4.6138 39 1 3.9054 0.2852 3.8949 40 1 5.7396 -0.9489 4.9847 41 1 5.8382 -5.7256 6.6662 42 1 7.0461 -6.0754 5.4065 43 1 7.4803 -5.0511 6.7959 44 1 3.9400 0.3094 1.1647 45 1 3.9471 -1.3086 0.4168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496442471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:49 Heat of formation + Delta-G solvation = 53.847376 kcal Electronic energy + Delta-G solvation = -27996.857911 eV Core-core repulsion = 24077.566377 eV Total energy + Delta-G solvation = -3919.291534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.76681 -39.67414 -37.54016 -37.12935 -35.36993 -33.89551 -32.78695 -31.67003 -30.61914 -29.73414 -28.28060 -27.34996 -25.40894 -24.02861 -23.00637 -22.41853 -21.46279 -20.86035 -19.53890 -19.20815 -17.62439 -17.02162 -16.63127 -16.16691 -15.70401 -15.03626 -14.85646 -14.77475 -14.43751 -13.96216 -13.83731 -13.60957 -13.49036 -13.31590 -13.04854 -12.97306 -12.72437 -12.57703 -12.30284 -12.21444 -11.96519 -11.89282 -11.26275 -11.11577 -11.00944 -10.92396 -10.78528 -10.64797 -10.50648 -10.19552 -10.07778 -9.79599 -9.77255 -9.56296 -9.45831 -8.91259 -8.81852 -8.30134 -6.84583 -5.64549 -2.93638 1.05802 1.10605 1.90675 2.20450 3.07374 3.38366 3.50509 3.55050 3.57091 4.01657 4.54485 4.66133 4.67106 4.72901 4.85746 4.92208 4.97190 5.00905 5.05745 5.19086 5.33476 5.44115 5.54720 5.67111 5.77807 5.86350 5.88132 5.95094 6.01690 6.09639 6.14612 6.20842 6.28273 6.29701 6.51119 6.57501 6.61916 6.81042 6.86601 6.99794 7.04886 7.17896 7.66492 7.79698 8.46324 8.52994 9.64070 10.22657 10.57060 11.57573 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.003175 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.126285 B = 8815.871212 C =10076.537830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.928 5.928 9 Si 0.903 3.097 10 H -0.291 1.291 11 H -0.293 1.293 12 H -0.283 1.283 13 C -0.103 4.103 14 H 0.070 0.930 15 C -0.114 4.114 16 C -0.133 4.133 17 C 0.101 3.899 18 N -0.605 5.605 19 C 0.586 3.414 20 O -0.517 6.517 21 C -0.258 4.258 22 C 0.087 3.913 23 N -0.276 5.276 24 N -0.357 5.357 25 C 0.092 3.908 26 C 0.173 3.827 27 Cl 0.027 6.973 28 C 0.125 3.875 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.385 0.615 33 H 0.254 0.746 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.201 0.799 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.969 -3.295 24.727 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.064 0.936 4 N -0.365 5.365 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.576 5.576 9 Si 0.734 3.266 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.123 4.123 14 H 0.088 0.912 15 C -0.152 4.152 16 C -0.171 4.171 17 C -0.023 4.023 18 N -0.338 5.338 19 C 0.372 3.628 20 O -0.393 6.393 21 C -0.274 4.274 22 C -0.099 4.099 23 N -0.098 5.098 24 N -0.140 5.140 25 C -0.049 4.049 26 C 0.015 3.985 27 Cl 0.055 6.945 28 C 0.004 3.996 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.219 0.781 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.217 0.783 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.083 0.917 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.675 -3.807 25.164 25.876 hybrid contribution -0.240 0.021 -1.714 1.730 sum 4.435 -3.786 23.450 24.164 Atomic orbital electron populations 1.22483 0.99426 1.00752 0.99805 1.20171 0.91747 0.95240 0.85871 0.93560 1.42455 1.78040 1.10784 1.05267 1.19182 1.36598 0.93729 0.87359 0.91348 1.24732 1.02318 0.95919 0.97923 1.69675 1.50669 1.08547 1.28738 0.86253 0.77707 0.78562 0.84028 1.21810 1.21930 1.20923 1.21834 0.94770 1.00476 0.95186 0.91172 1.21626 1.00969 0.99028 0.93617 1.21908 0.94981 1.01510 0.98716 1.21953 0.94860 0.98933 0.86531 1.47960 1.43987 1.34049 1.07825 1.17109 0.78961 0.79735 0.86965 1.90887 1.59981 1.56113 1.32271 1.20002 1.17507 0.90812 0.99066 1.24095 0.96072 1.00388 0.89379 1.77309 1.24480 0.85712 1.22258 1.48482 1.48127 1.07512 1.09831 1.22083 1.02137 0.83203 0.97474 1.22038 0.99091 0.91186 0.86149 1.98470 1.94285 1.38075 1.63633 1.21797 0.93818 0.98719 0.85271 0.94327 0.92950 0.93658 0.78129 0.93592 0.91313 0.91867 0.91702 0.91111 0.89819 0.91377 0.78287 0.89745 0.88929 0.88197 0.91700 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.14 37.16 0.34 -2.60 16 2 C 0.18 3.50 2.47 -67.93 -0.17 3.33 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 N -0.72 -18.17 4.52 -53.43 -0.24 -18.41 16 5 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.86 13.06 55.49 0.72 -28.13 16 9 Si 0.90 22.89 29.55 -169.99 -5.02 17.86 16 10 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 C -0.10 -1.67 1.99 -90.28 -0.18 -1.85 16 14 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.11 -1.40 4.85 -26.69 -0.13 -1.53 16 16 C -0.13 -1.36 6.08 -26.61 -0.16 -1.53 16 17 C 0.10 1.04 5.37 -3.71 -0.02 1.02 16 18 N -0.60 -8.88 2.97 -173.81 -0.52 -9.39 16 19 C 0.59 9.72 7.50 -12.57 -0.09 9.63 16 20 O -0.52 -10.92 15.92 5.26 0.08 -10.84 16 21 C -0.26 -3.47 5.32 -105.02 -0.56 -4.03 16 22 C 0.09 0.92 9.58 -16.97 -0.16 0.76 16 23 N -0.28 -3.01 12.49 30.87 0.39 -2.63 16 24 N -0.36 -3.66 3.98 -64.32 -0.26 -3.91 16 25 C 0.09 0.52 11.28 59.84 0.67 1.19 16 26 C 0.17 2.16 7.52 -16.44 -0.12 2.04 16 27 Cl 0.03 0.34 28.05 -51.86 -1.45 -1.12 16 28 C 0.13 2.17 5.51 -3.49 -0.02 2.15 16 29 H 0.04 0.56 6.40 -51.93 -0.33 0.23 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.38 10.55 7.64 -40.82 -0.31 10.24 16 33 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.77 4.60 -51.93 -0.24 0.53 16 39 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 40 H 0.20 1.49 7.08 -52.49 -0.37 1.12 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.42 7.78 -51.93 -0.40 0.02 16 43 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.11 2.38 6.53 -51.93 -0.34 2.05 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -34.87 375.92 -8.00 -42.87 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.52 Total: 6.68 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.85 Total: 1.35 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.10 Total: -62.47 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -1.45 Total: -1.12 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.87 -8.00 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496442471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.717 kcal (2) G-P(sol) polarization free energy of solvation -34.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds