Wall clock time and date at job start Sat Apr 11 2020 06:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42887 * 1 3 3 C 1.35734 * 116.99990 * 2 1 4 4 C 1.41858 * 126.78773 * 180.02562 * 3 2 1 5 5 C 1.36656 * 103.81232 * 180.02562 * 4 3 2 6 6 C 1.47542 * 126.87838 * 179.97438 * 5 4 3 7 7 O 1.21571 * 120.00154 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99879 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00273 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47658 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47103 * 64.99700 * 10 9 8 12 12 C 1.52997 * 109.47482 * 184.99947 * 10 9 8 13 13 N 1.46902 * 109.47181 * 305.00169 * 10 9 8 14 14 C 1.46900 * 110.99736 * 298.95354 * 13 10 9 15 15 C 1.46895 * 111.00186 * 174.99766 * 13 10 9 16 16 C 1.50703 * 109.46874 * 189.99595 * 15 13 10 17 17 O 1.21295 * 120.00359 * 0.02562 * 16 15 13 18 18 N 1.34778 * 119.99693 * 179.97438 * 16 15 13 19 19 C 1.37102 * 120.00091 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99374 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00514 * 180.02562 * 19 18 16 22 22 N 1.31420 * 119.99495 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00457 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47266 * 89.99805 * 23 21 19 25 25 H 1.48498 * 109.47322 * 209.99960 * 23 21 19 26 26 H 1.48498 * 109.46858 * 329.99735 * 23 21 19 27 27 O 1.34664 * 106.24224 * 0.21944 * 5 4 3 28 28 N 1.20874 * 111.62966 * 359.59845 * 27 5 4 29 29 H 1.08998 * 109.47167 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47464 * 299.99481 * 1 2 3 31 31 H 1.09004 * 109.47781 * 59.99803 * 1 2 3 32 32 H 1.08001 * 128.09302 * 0.02562 * 4 3 2 33 33 H 0.97002 * 119.99790 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.46952 * 59.99319 * 9 8 6 35 35 H 1.09004 * 109.46722 * 300.00399 * 9 8 6 36 36 H 1.09002 * 109.47153 * 59.99783 * 12 10 9 37 37 H 1.09001 * 109.46832 * 299.99974 * 12 10 9 38 38 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 39 39 H 1.08997 * 109.47292 * 59.99623 * 14 13 10 40 40 H 1.09002 * 109.47267 * 179.97438 * 14 13 10 41 41 H 1.09000 * 109.47210 * 300.00139 * 14 13 10 42 42 H 1.08999 * 109.47066 * 309.99575 * 15 13 10 43 43 H 1.09001 * 109.47511 * 70.00176 * 15 13 10 44 44 H 0.97002 * 120.00164 * 0.02562 * 18 16 15 45 45 H 0.97001 * 119.99441 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4430 1.4506 -0.0005 5 6 3.5389 2.8138 0.0003 6 6 4.7784 3.6142 0.0008 7 8 5.8602 3.0595 0.0009 8 7 4.7112 4.9603 0.0011 9 6 5.9419 5.7552 0.0021 10 6 5.5878 7.2435 0.0029 11 1 5.0807 7.4959 0.9342 12 6 6.8677 8.0724 -0.1217 13 7 4.7021 7.5368 -1.1318 14 6 5.3627 7.2316 -2.4078 15 6 4.2452 8.9324 -1.0961 16 6 3.1572 9.1311 -2.1197 17 8 2.7974 8.2015 -2.8107 18 7 2.5832 10.3417 -2.2667 19 6 1.5930 10.5224 -3.1975 20 1 1.2733 9.6948 -3.8133 21 6 1.0016 11.7705 -3.3495 22 7 1.3911 12.7777 -2.6005 23 14 -0.3470 12.0169 -4.6183 24 1 -1.6674 11.7424 -3.9969 25 1 -0.3133 13.4174 -5.1109 26 1 -0.1323 11.0868 -5.7558 27 8 2.2757 3.2802 0.0062 28 7 1.4685 2.3805 0.0009 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5139 -0.8900 32 1 4.2441 0.7262 -0.0014 33 1 3.8480 5.4028 0.0006 34 1 6.5265 5.5208 -0.8875 35 1 6.5253 5.5203 0.8924 36 1 7.3748 7.8201 -1.0531 37 1 7.5249 7.8548 0.7202 38 1 6.6154 9.1328 -0.1216 39 1 5.6284 6.1749 -2.4358 40 1 4.6849 7.4574 -3.2311 41 1 6.2650 7.8357 -2.5035 42 1 3.8570 9.1623 -0.1038 43 1 5.0813 9.5944 -1.3215 44 1 2.8707 11.0851 -1.7138 45 1 0.9779 13.6489 -2.7063 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505904347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:11 Heat of formation + Delta-G solvation = -23.518995 kcal Electronic energy + Delta-G solvation = -29457.234496 eV Core-core repulsion = 25093.878939 eV Total energy + Delta-G solvation = -4363.355557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.18493 -40.00161 -39.14827 -38.89117 -37.35562 -34.61429 -33.86421 -33.42307 -32.18101 -31.27103 -30.87789 -28.02758 -27.94104 -26.83720 -25.41924 -24.13413 -23.59758 -23.30508 -20.96560 -20.24124 -19.12334 -18.93084 -18.15794 -17.84633 -17.09378 -16.71055 -16.42635 -16.19081 -15.85569 -15.63378 -15.17591 -14.91164 -14.75737 -14.68983 -14.18316 -14.08982 -13.80971 -13.54701 -13.26652 -13.06410 -12.89815 -12.54519 -12.31046 -12.19479 -11.97113 -11.80513 -11.65634 -11.46858 -11.25529 -11.23684 -10.96014 -10.80238 -10.53828 -10.40257 -10.22730 -10.10975 -9.60104 -9.48322 -9.24357 -8.50036 -7.99767 -7.89334 -6.42890 -3.83517 0.55307 1.86052 2.37006 2.38901 2.80457 3.17151 3.18897 3.26031 3.31561 3.83450 3.88477 3.92823 4.22756 4.50700 4.59541 4.68964 4.75637 4.83557 4.91386 4.95110 5.08196 5.16021 5.16276 5.23834 5.37788 5.39135 5.44077 5.51515 5.65898 5.73425 5.85915 5.87025 5.95511 6.08142 6.20278 6.26084 6.54141 6.61248 7.16918 7.22799 7.29561 7.54418 7.78953 7.89113 8.05366 8.60571 9.17384 9.53456 10.05119 10.74851 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009939 B = 0.002672 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.466633 B =10478.147562 C =12897.311490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.282 6.282 3 C 0.200 3.800 4 C -0.157 4.157 5 C -0.054 4.054 6 C 0.604 3.396 7 O -0.520 6.520 8 N -0.693 5.693 9 C 0.129 3.871 10 C 0.062 3.938 11 H 0.091 0.909 12 C -0.186 4.186 13 N -0.512 5.512 14 C 0.015 3.985 15 C 0.045 3.955 16 C 0.443 3.557 17 O -0.576 6.576 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 O 0.127 5.873 28 N -0.385 5.385 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.189 0.811 33 H 0.421 0.579 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.021 0.979 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.883 -16.549 9.183 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.189 6.189 3 C 0.003 3.997 4 C -0.180 4.180 5 C -0.120 4.120 6 C 0.386 3.614 7 O -0.397 6.397 8 N -0.344 5.344 9 C 0.005 3.995 10 C -0.047 4.047 11 H 0.110 0.890 12 C -0.245 4.245 13 N -0.236 5.236 14 C -0.132 4.132 15 C -0.086 4.086 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 O 0.059 5.941 28 N -0.107 5.107 29 H 0.125 0.875 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.207 0.793 33 H 0.258 0.742 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.039 0.961 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.765 -17.553 8.743 20.440 hybrid contribution 0.129 1.071 -0.335 1.129 sum 5.894 -16.483 8.408 19.419 Atomic orbital electron populations 1.23113 0.76480 1.04248 1.02664 1.86203 1.22838 1.20376 1.89445 1.21901 0.90622 0.85886 1.01277 1.22133 0.94394 0.94893 1.06583 1.24047 0.87235 0.93759 1.06995 1.16439 0.84997 0.82138 0.77793 1.90866 1.26493 1.71480 1.50844 1.45767 1.11926 1.04710 1.72038 1.21547 0.85966 0.89193 1.02752 1.22063 0.93130 0.93384 0.96139 0.89044 1.22403 0.98310 1.01051 1.02778 1.61828 1.37578 1.21840 1.02315 1.22614 0.97719 1.00035 0.92873 1.21876 0.97559 0.88793 1.00410 1.19731 0.86186 0.83985 0.87235 1.90497 1.65716 1.41034 1.48809 1.41868 1.33979 1.09299 1.34968 1.19685 1.12388 0.96576 1.14066 0.87928 1.25250 0.99098 0.95125 0.98468 1.69614 1.43111 1.01761 1.39893 0.85870 0.80600 0.77448 0.80462 1.20398 1.20977 1.19439 1.85024 1.11676 1.29464 1.67933 1.74046 1.15869 0.96651 1.24166 0.87503 0.92076 0.91951 0.79345 0.74172 0.90680 0.90484 0.91738 0.91808 0.91524 0.92105 0.88543 0.96055 0.89381 0.93125 0.77537 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.73 101.05 1.08 1.31 16 2 O -0.28 -3.04 10.57 -18.91 -0.20 -3.24 16 3 C 0.20 2.42 8.00 -16.72 -0.13 2.28 16 4 C -0.16 -1.76 10.97 -38.77 -0.43 -2.18 16 5 C -0.05 -0.65 7.29 -36.36 -0.26 -0.91 16 6 C 0.60 7.46 7.82 -12.46 -0.10 7.36 16 7 O -0.52 -7.50 16.91 5.30 0.09 -7.41 16 8 N -0.69 -7.81 5.39 -61.35 -0.33 -8.14 16 9 C 0.13 1.31 4.68 -4.05 -0.02 1.29 16 10 C 0.06 0.64 2.50 -67.72 -0.17 0.47 16 11 H 0.09 0.87 8.03 -51.93 -0.42 0.45 16 12 C -0.19 -1.69 8.50 37.16 0.32 -1.37 16 13 N -0.51 -7.26 3.93 -236.34 -0.93 -8.19 16 14 C 0.02 0.22 8.46 60.06 0.51 0.73 16 15 C 0.04 0.72 4.89 -4.98 -0.02 0.69 16 16 C 0.44 9.84 7.47 -10.98 -0.08 9.76 16 17 O -0.58 -14.71 13.91 5.54 0.08 -14.63 16 18 N -0.56 -13.77 5.29 -10.96 -0.06 -13.83 16 19 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 20 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.15 13.05 55.50 0.72 -23.43 16 23 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 O 0.13 1.64 11.03 15.49 0.17 1.82 16 28 N -0.39 -5.12 11.50 30.47 0.35 -4.77 16 29 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.42 4.87 7.96 -40.82 -0.33 4.54 16 34 H 0.08 0.81 6.70 -51.93 -0.35 0.46 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.61 6.39 -51.93 -0.33 0.28 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.64 6.75 -51.93 -0.35 0.29 16 39 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 40 H 0.10 1.81 5.83 -51.93 -0.30 1.51 16 41 H 0.02 0.28 6.28 -51.93 -0.33 -0.04 16 42 H 0.09 1.26 8.00 -51.93 -0.42 0.84 16 43 H 0.05 0.75 6.94 -51.93 -0.36 0.39 16 44 H 0.39 9.15 7.90 -40.82 -0.32 8.82 16 45 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -32.09 380.38 -4.82 -36.91 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -5.88 Total: 11.69 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 0.45 Total: 11.68 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.24 Total: -58.35 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: 0.14 Total: -23.47 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.09 -4.82 -36.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505904347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.393 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds